Wall clock time and date at job start Wed Apr 1 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46951 * 2 1 4 4 C 1.52991 * 109.46847 * 239.99938 * 2 1 3 5 5 C 1.52998 * 109.47122 * 175.00424 * 4 2 1 6 6 H 1.08998 * 109.47357 * 54.99579 * 5 4 2 7 7 C 1.52998 * 109.47553 * 175.00111 * 5 4 2 8 8 N 1.46501 * 109.46864 * 294.99914 * 5 4 2 9 9 C 1.34775 * 119.99996 * 155.00192 * 8 5 4 10 10 O 1.21579 * 120.00176 * 359.97438 * 9 8 5 11 11 C 1.47630 * 120.00004 * 179.97438 * 9 8 5 12 12 C 1.39631 * 120.18831 * 53.78587 * 11 9 8 13 13 C 1.37856 * 119.91737 * 180.29732 * 12 11 9 14 14 C 1.38507 * 120.29969 * 359.67945 * 13 12 11 15 15 C 1.38104 * 120.38581 * 0.02562 * 14 13 12 16 16 C 1.38716 * 120.07458 * 359.97438 * 15 14 13 17 17 N 1.39811 * 120.15223 * 180.02562 * 16 15 14 18 18 C 1.36331 * 126.86437 * 6.34102 * 17 16 15 19 19 C 1.34966 * 106.77448 * 180.26600 * 18 17 16 20 20 N 1.33383 * 109.01563 * 359.60191 * 19 18 17 21 21 N 1.28766 * 109.92812 * 0.41034 * 20 19 18 22 22 N 1.46498 * 109.46722 * 120.00236 * 2 1 3 23 23 C 1.36941 * 119.99682 * 274.99413 * 22 2 1 24 24 H 1.07997 * 120.00161 * 0.02562 * 23 22 2 25 25 C 1.38813 * 119.99673 * 180.02562 * 23 22 2 26 26 N 1.31625 * 119.99706 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00246 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47286 * 89.99625 * 27 25 23 29 29 H 1.48495 * 109.46691 * 209.99834 * 27 25 23 30 30 H 1.48503 * 109.46715 * 329.99525 * 27 25 23 31 31 H 1.08990 * 109.47550 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46604 * 300.00375 * 1 2 3 33 33 H 1.09001 * 109.46726 * 59.99635 * 1 2 3 34 34 H 1.09003 * 109.47361 * 55.00050 * 4 2 1 35 35 H 1.09006 * 109.47639 * 295.00210 * 4 2 1 36 36 H 1.08999 * 109.47711 * 179.97438 * 7 5 4 37 37 H 1.08999 * 109.47264 * 299.99849 * 7 5 4 38 38 H 1.08998 * 109.47223 * 59.99386 * 7 5 4 39 39 H 0.96999 * 120.00229 * 334.99588 * 8 5 4 40 40 H 1.07999 * 120.04238 * 359.97438 * 12 11 9 41 41 H 1.08002 * 119.85468 * 179.70151 * 13 12 11 42 42 H 1.07998 * 119.80927 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.96548 * 179.97438 * 15 14 13 44 44 H 1.07998 * 126.61402 * 359.97438 * 18 17 16 45 45 H 1.08000 * 125.48980 * 179.74130 * 19 18 17 46 46 H 0.96997 * 120.00443 * 95.00552 * 22 2 1 47 47 H 0.97002 * 120.00008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1612 1.2134 -1.0867 10 8 5.9375 0.4320 -0.5720 11 6 5.5476 2.6267 -1.2674 12 6 4.7305 3.6464 -0.7750 13 6 5.0936 4.9644 -0.9522 14 6 6.2696 5.2827 -1.6112 15 6 7.0900 4.2841 -2.0978 16 6 6.7400 2.9526 -1.9283 17 7 7.5696 1.9403 -2.4198 18 6 8.8044 2.0932 -2.9771 19 6 9.2355 0.8593 -3.3134 20 7 8.3066 -0.0342 -2.9702 21 7 7.2977 0.5638 -2.4386 22 7 2.0183 -0.6907 1.1962 23 6 2.1491 -0.0075 2.3757 24 1 1.8920 1.0403 2.4243 25 6 2.6123 -0.6618 3.5090 26 7 2.7385 -0.0050 4.6427 27 14 3.0577 -2.4740 3.4248 28 1 4.4904 -2.6152 3.0609 29 1 2.8185 -3.1044 4.7479 30 1 2.2180 -3.1429 2.3988 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6053 -0.2617 -2.1369 35 1 1.7516 -1.7715 -1.2056 36 1 5.1714 -1.3612 -2.5386 37 1 3.8001 -2.4820 -2.3595 38 1 3.6546 -1.0594 -3.4193 39 1 3.3285 1.4128 -1.9028 40 1 3.8126 3.4029 -0.2607 41 1 4.4585 5.7524 -0.5753 42 1 6.5466 6.3180 -1.7452 43 1 8.0052 4.5400 -2.6109 44 1 9.3333 3.0230 -3.1256 45 1 10.1813 0.6318 -3.7827 46 1 2.2491 -1.6318 1.1526 47 1 3.0625 -0.4621 5.4346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146820686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:05 Heat of formation + Delta-G solvation = 119.362584 kcal Electronic energy + Delta-G solvation = -30707.324975 eV Core-core repulsion = 26700.569853 eV Total energy + Delta-G solvation = -4006.755122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.27832 -40.12928 -38.65381 -36.79968 -34.73668 -34.36828 -32.32766 -31.81416 -30.87587 -30.30037 -29.68907 -29.13610 -26.32527 -24.82444 -24.12509 -23.26526 -22.25581 -21.52810 -20.98176 -20.25737 -19.75883 -18.75412 -17.74326 -17.30919 -16.13732 -15.85471 -15.64572 -15.51297 -15.21294 -14.71734 -14.56419 -14.34772 -14.09876 -14.02704 -13.57894 -13.54153 -13.22673 -12.89779 -12.56155 -12.37758 -12.28806 -12.05959 -11.88389 -11.84518 -11.65714 -11.46207 -11.26892 -11.18212 -11.08468 -10.84558 -10.61933 -10.39136 -10.22808 -9.89654 -9.67974 -9.51540 -9.45218 -9.31700 -8.85012 -8.66069 -8.60515 -7.18640 -5.69914 -3.04113 0.25783 0.77452 1.71132 2.00522 2.49130 2.98774 3.32468 3.45537 3.49746 3.52016 3.55341 4.12949 4.26391 4.53064 4.66240 4.68134 4.75003 4.84611 4.96280 5.01845 5.09457 5.15579 5.30816 5.32007 5.39470 5.50592 5.62620 5.66847 5.80466 5.86281 5.91218 5.94298 6.00181 6.04668 6.06933 6.07918 6.23563 6.26536 6.36496 6.40831 6.54722 6.63082 6.67455 6.79321 6.92766 7.01977 7.82354 8.04967 8.09567 8.49141 8.61366 9.28159 10.01596 10.20803 11.48704 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.003767 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.145852 B = 7430.806020 C = 7905.145926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.053 0.947 4 C -0.135 4.135 5 C 0.148 3.852 6 H 0.099 0.901 7 C -0.163 4.163 8 N -0.709 5.709 9 C 0.562 3.438 10 O -0.496 6.496 11 C -0.113 4.113 12 C -0.063 4.063 13 C -0.120 4.120 14 C -0.082 4.082 15 C -0.136 4.136 16 C 0.177 3.823 17 N -0.325 5.325 18 C 0.010 3.990 19 C -0.074 4.074 20 N -0.242 5.242 21 N -0.005 5.005 22 N -0.745 5.745 23 C -0.237 4.237 24 H 0.087 0.913 25 C 0.006 3.994 26 N -0.936 5.936 27 Si 0.880 3.120 28 H -0.282 1.282 29 H -0.293 1.293 30 H -0.277 1.277 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.393 0.607 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.192 0.808 45 H 0.187 0.813 46 H 0.360 0.640 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.455 11.839 -20.946 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.044 3.956 6 H 0.117 0.883 7 C -0.221 4.221 8 N -0.360 5.360 9 C 0.345 3.655 10 O -0.368 6.368 11 C -0.119 4.119 12 C -0.082 4.082 13 C -0.138 4.138 14 C -0.101 4.101 15 C -0.157 4.157 16 C 0.083 3.917 17 N -0.107 5.107 18 C -0.139 4.139 19 C -0.228 4.228 20 N -0.113 5.113 21 N 0.017 4.983 22 N -0.389 5.389 23 C -0.367 4.367 24 H 0.105 0.895 25 C -0.189 4.189 26 N -0.584 5.584 27 Si 0.710 3.290 28 H -0.209 1.209 29 H -0.219 1.219 30 H -0.203 1.203 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.226 0.774 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.209 0.791 45 H 0.204 0.796 46 H 0.193 0.807 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.076 10.251 -20.039 23.594 hybrid contribution 0.824 -0.028 -0.195 0.847 sum 7.900 10.223 -20.233 24.006 Atomic orbital electron populations 1.22429 0.99080 1.00842 1.00229 1.20181 0.91662 0.95743 0.85584 0.92884 1.22231 0.94000 1.02129 0.99018 1.20961 0.94630 0.80226 0.99737 0.88300 1.22193 1.02554 0.99596 0.97749 1.45789 1.16020 1.11525 1.62680 1.17693 0.82394 0.86241 0.79140 1.90861 1.50300 1.54680 1.40969 1.19915 0.94800 0.95658 1.01520 1.21401 0.98992 0.91552 0.96261 1.21282 0.97160 0.96499 0.98894 1.21131 0.93716 0.99164 0.96090 1.20797 1.01744 0.89584 1.03597 1.17436 0.90291 0.86015 0.97915 1.48043 1.12981 1.08064 1.41629 1.23471 0.87703 1.02036 1.00677 1.23223 1.02304 0.88300 1.08956 1.74432 0.99922 1.28064 1.08886 1.82693 1.17108 0.82090 1.16413 1.42783 1.79657 1.09280 1.07140 1.18983 1.36719 0.95298 0.85712 0.89486 1.24618 1.01354 0.97351 0.95598 1.69696 1.52863 1.35530 1.00299 0.86616 0.78800 0.86953 0.76621 1.20891 1.21917 1.20344 0.93647 0.92474 0.94401 0.91609 0.90734 0.91489 0.92117 0.93295 0.77351 0.83614 0.84383 0.84433 0.84658 0.79089 0.79594 0.80726 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 9.49 37.16 0.35 -2.42 16 2 C 0.18 3.23 2.84 -67.93 -0.19 3.04 16 3 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 4 C -0.14 -2.00 4.29 -26.74 -0.11 -2.11 16 5 C 0.15 2.44 2.52 -67.93 -0.17 2.26 16 6 H 0.10 2.08 7.05 -51.93 -0.37 1.71 16 7 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 8 N -0.71 -10.77 4.42 -54.82 -0.24 -11.01 16 9 C 0.56 9.91 5.95 -12.43 -0.07 9.84 16 10 O -0.50 -11.07 14.11 5.30 0.07 -10.99 16 11 C -0.11 -1.61 5.66 -104.82 -0.59 -2.21 16 12 C -0.06 -0.72 9.71 -39.20 -0.38 -1.10 16 13 C -0.12 -1.00 10.02 -39.62 -0.40 -1.40 16 14 C -0.08 -0.59 10.03 -39.53 -0.40 -0.99 16 15 C -0.14 -1.16 9.47 -39.45 -0.37 -1.54 16 16 C 0.18 2.25 6.69 -83.32 -0.56 1.69 16 17 N -0.33 -4.54 3.81 -10.32 -0.04 -4.58 16 18 C 0.01 0.10 10.92 -16.71 -0.18 -0.09 16 19 C -0.07 -0.84 11.86 -18.04 -0.21 -1.05 16 20 N -0.24 -3.92 12.33 30.09 0.37 -3.55 16 21 N 0.00 -0.08 9.50 60.35 0.57 0.49 16 22 N -0.75 -17.48 4.30 -53.43 -0.23 -17.71 16 23 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 26 N -0.94 -30.06 13.97 55.49 0.78 -29.28 16 27 Si 0.88 23.24 27.74 -169.99 -4.71 18.52 16 28 H -0.28 -7.67 7.11 56.52 0.40 -7.26 16 29 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 30 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.39 4.75 8.54 -40.82 -0.35 4.40 16 40 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.14 0.72 6.88 -52.49 -0.36 0.36 16 44 H 0.19 0.92 7.22 -52.49 -0.38 0.54 16 45 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.36 8.54 5.66 -40.82 -0.23 8.31 16 47 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -38.95 392.38 -7.46 -46.41 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.74 Total: 10.68 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.20 Total: -4.89 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: 1.21 Total: -65.64 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -10.99 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.95 -7.46 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146820686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.768 kcal (2) G-P(sol) polarization free energy of solvation -38.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds