Wall clock time and date at job start Wed Apr 1 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46951 * 2 1 4 4 C 1.52991 * 109.46847 * 239.99938 * 2 1 3 5 5 C 1.52998 * 109.47122 * 175.00424 * 4 2 1 6 6 H 1.08998 * 109.47357 * 54.99579 * 5 4 2 7 7 C 1.52998 * 109.47553 * 175.00111 * 5 4 2 8 8 N 1.46501 * 109.46864 * 294.99914 * 5 4 2 9 9 C 1.34775 * 119.99996 * 155.00192 * 8 5 4 10 10 O 1.21579 * 120.00176 * 359.97438 * 9 8 5 11 11 C 1.47630 * 120.00004 * 179.97438 * 9 8 5 12 12 C 1.39631 * 120.18831 * 53.78587 * 11 9 8 13 13 C 1.37856 * 119.91737 * 180.29732 * 12 11 9 14 14 C 1.38507 * 120.29969 * 359.67945 * 13 12 11 15 15 C 1.38104 * 120.38581 * 0.02562 * 14 13 12 16 16 C 1.38716 * 120.07458 * 359.97438 * 15 14 13 17 17 N 1.39811 * 120.15223 * 180.02562 * 16 15 14 18 18 C 1.36331 * 126.86437 * 6.34102 * 17 16 15 19 19 C 1.34966 * 106.77448 * 180.26600 * 18 17 16 20 20 N 1.33383 * 109.01563 * 359.60191 * 19 18 17 21 21 N 1.28766 * 109.92812 * 0.41034 * 20 19 18 22 22 N 1.46498 * 109.46722 * 120.00236 * 2 1 3 23 23 C 1.36941 * 119.99682 * 274.99413 * 22 2 1 24 24 H 1.07997 * 120.00161 * 0.02562 * 23 22 2 25 25 C 1.38813 * 119.99673 * 180.02562 * 23 22 2 26 26 N 1.31625 * 119.99706 * 179.97438 * 25 23 22 27 27 Si 1.86804 * 120.00246 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47286 * 89.99625 * 27 25 23 29 29 H 1.48495 * 109.46691 * 209.99834 * 27 25 23 30 30 H 1.48503 * 109.46715 * 329.99525 * 27 25 23 31 31 H 1.08990 * 109.47550 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46604 * 300.00375 * 1 2 3 33 33 H 1.09001 * 109.46726 * 59.99635 * 1 2 3 34 34 H 1.09003 * 109.47361 * 55.00050 * 4 2 1 35 35 H 1.09006 * 109.47639 * 295.00210 * 4 2 1 36 36 H 1.08999 * 109.47711 * 179.97438 * 7 5 4 37 37 H 1.08999 * 109.47264 * 299.99849 * 7 5 4 38 38 H 1.08998 * 109.47223 * 59.99386 * 7 5 4 39 39 H 0.96999 * 120.00229 * 334.99588 * 8 5 4 40 40 H 1.07999 * 120.04238 * 359.97438 * 12 11 9 41 41 H 1.08002 * 119.85468 * 179.70151 * 13 12 11 42 42 H 1.07998 * 119.80927 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.96548 * 179.97438 * 15 14 13 44 44 H 1.07998 * 126.61402 * 359.97438 * 18 17 16 45 45 H 1.08000 * 125.48980 * 179.74130 * 19 18 17 46 46 H 0.96997 * 120.00443 * 95.00552 * 22 2 1 47 47 H 0.97002 * 120.00008 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6134 -1.3136 6 1 3.9954 -0.9923 -0.3868 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7893 -1.4924 9 6 5.1612 1.2134 -1.0867 10 8 5.9375 0.4320 -0.5720 11 6 5.5476 2.6267 -1.2674 12 6 4.7305 3.6464 -0.7750 13 6 5.0936 4.9644 -0.9522 14 6 6.2696 5.2827 -1.6112 15 6 7.0900 4.2841 -2.0978 16 6 6.7400 2.9526 -1.9283 17 7 7.5696 1.9403 -2.4198 18 6 8.8044 2.0932 -2.9771 19 6 9.2355 0.8593 -3.3134 20 7 8.3066 -0.0342 -2.9702 21 7 7.2977 0.5638 -2.4386 22 7 2.0183 -0.6907 1.1962 23 6 2.1491 -0.0075 2.3757 24 1 1.8920 1.0403 2.4243 25 6 2.6123 -0.6618 3.5090 26 7 2.7385 -0.0050 4.6427 27 14 3.0577 -2.4740 3.4248 28 1 4.4904 -2.6152 3.0609 29 1 2.8185 -3.1044 4.7479 30 1 2.2180 -3.1429 2.3988 31 1 -0.3634 -1.0275 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6053 -0.2617 -2.1369 35 1 1.7516 -1.7715 -1.2056 36 1 5.1714 -1.3612 -2.5386 37 1 3.8001 -2.4820 -2.3595 38 1 3.6546 -1.0594 -3.4193 39 1 3.3285 1.4128 -1.9028 40 1 3.8126 3.4029 -0.2607 41 1 4.4585 5.7524 -0.5753 42 1 6.5466 6.3180 -1.7452 43 1 8.0052 4.5400 -2.6109 44 1 9.3333 3.0230 -3.1256 45 1 10.1813 0.6318 -3.7827 46 1 2.2491 -1.6318 1.1526 47 1 3.0625 -0.4621 5.4346 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146820686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:04 Heat of formation + Delta-G solvation = 90.303754 kcal Electronic energy + Delta-G solvation = -30708.585060 eV Core-core repulsion = 26700.569853 eV Total energy + Delta-G solvation = -4008.015207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.18479 -41.19952 -39.69921 -38.29977 -36.13173 -35.48956 -34.10693 -33.06251 -31.86657 -31.43650 -30.91135 -30.51269 -27.62728 -25.79393 -25.33371 -24.92368 -23.34735 -22.34078 -22.19215 -21.51009 -21.23913 -19.83670 -19.50882 -18.46015 -17.37741 -16.84237 -16.73833 -16.50901 -16.28927 -16.09702 -15.88403 -15.60319 -15.30974 -15.15632 -14.92903 -14.63454 -14.56844 -14.32109 -14.09484 -13.93384 -13.46578 -13.27992 -13.10967 -13.04537 -12.87105 -12.70461 -12.59214 -12.35634 -12.25895 -12.15805 -12.10967 -12.01984 -11.89607 -11.70763 -11.43755 -11.00340 -10.89415 -10.37396 -10.14149 -9.91875 -9.50828 -9.27967 -8.03563 -5.32273 -0.57955 0.02461 0.88403 1.19877 1.28963 1.36332 1.38957 1.60210 1.84358 2.23802 2.45534 2.63495 3.30477 3.32802 3.58863 3.63582 3.66932 3.83638 3.91207 4.06269 4.08334 4.14202 4.24384 4.28152 4.31959 4.36429 4.51181 4.58837 4.64155 4.74381 4.77853 4.79125 4.88941 4.98098 5.06766 5.07990 5.18693 5.21537 5.27675 5.31234 5.36510 5.37546 5.57413 5.60084 5.64642 5.78795 5.89902 6.21808 6.62044 7.09518 7.15904 7.39381 7.88909 8.03934 9.18554 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.003767 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.145852 B = 7430.806020 C = 7905.145926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.120 4.120 5 C 0.150 3.850 6 H 0.045 0.955 7 C -0.150 4.150 8 N -0.700 5.700 9 C 0.556 3.444 10 O -0.556 6.556 11 C -0.149 4.149 12 C -0.078 4.078 13 C -0.112 4.112 14 C -0.064 4.064 15 C -0.122 4.122 16 C 0.148 3.852 17 N -0.331 5.331 18 C 0.029 3.971 19 C -0.086 4.086 20 N -0.286 5.286 21 N -0.070 5.070 22 N -0.750 5.750 23 C -0.209 4.209 24 H 0.060 0.940 25 C -0.064 4.064 26 N -0.985 5.985 27 Si 0.939 3.061 28 H -0.299 1.299 29 H -0.294 1.294 30 H -0.247 1.247 31 H 0.049 0.951 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.408 0.592 40 H 0.134 0.866 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.177 0.823 44 H 0.250 0.750 45 H 0.223 0.777 46 H 0.360 0.640 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 14.517 -24.323 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.159 4.159 5 C 0.045 3.955 6 H 0.064 0.936 7 C -0.209 4.209 8 N -0.351 5.351 9 C 0.342 3.658 10 O -0.433 6.433 11 C -0.154 4.154 12 C -0.097 4.097 13 C -0.130 4.130 14 C -0.082 4.082 15 C -0.142 4.142 16 C 0.055 3.945 17 N -0.114 5.114 18 C -0.120 4.120 19 C -0.241 4.241 20 N -0.156 5.156 21 N -0.047 5.047 22 N -0.393 5.393 23 C -0.340 4.340 24 H 0.078 0.922 25 C -0.255 4.255 26 N -0.637 5.637 27 Si 0.769 3.231 28 H -0.227 1.227 29 H -0.221 1.221 30 H -0.171 1.171 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.244 0.756 40 H 0.151 0.849 41 H 0.185 0.815 42 H 0.203 0.797 43 H 0.194 0.806 44 H 0.266 0.734 45 H 0.239 0.761 46 H 0.192 0.808 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.099 12.925 -23.495 27.739 hybrid contribution 0.837 -0.596 0.750 1.272 sum 7.936 12.328 -22.745 27.061 Atomic orbital electron populations 1.22274 0.96994 1.01343 1.00950 1.20492 0.92939 0.95398 0.85024 0.93591 1.22143 0.92365 1.02695 0.98662 1.20806 0.95629 0.81009 0.98006 0.93642 1.22059 1.00541 1.00142 0.98115 1.45713 1.15898 1.11422 1.62108 1.18349 0.82068 0.87609 0.77812 1.90811 1.51961 1.56808 1.43740 1.19819 0.96991 0.93904 1.04713 1.21415 0.98679 0.92712 0.96926 1.21671 0.98042 0.95409 0.97895 1.21712 0.92087 1.01040 0.93406 1.21336 1.03040 0.87494 1.02380 1.17906 0.90088 0.87424 0.99064 1.48267 1.14261 1.07481 1.41345 1.24447 0.86069 1.03733 0.97732 1.23991 1.02923 0.88297 1.08869 1.74373 1.01204 1.30042 1.09957 1.82692 1.18494 0.84132 1.19396 1.42875 1.79865 1.09290 1.07316 1.18989 1.33567 0.94263 0.87195 0.92192 1.25315 1.03038 1.01522 0.95613 1.69851 1.55526 1.37214 1.01084 0.85625 0.77782 0.82592 0.77131 1.22672 1.22058 1.17140 0.93226 0.95208 0.90223 0.87277 0.89760 0.94657 0.91005 0.90700 0.75571 0.84859 0.81523 0.79733 0.80558 0.73408 0.76063 0.80777 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.49 71.98 0.68 -4.22 16 2 C 0.17 6.03 2.84 44.99 0.13 6.15 16 3 H 0.05 1.71 7.56 -2.39 -0.02 1.69 16 4 C -0.12 -3.34 4.29 30.59 0.13 -3.21 16 5 C 0.15 5.06 2.52 44.99 0.11 5.18 16 6 H 0.05 2.04 7.05 -2.39 -0.02 2.03 16 7 C -0.15 -4.53 9.48 71.98 0.68 -3.85 16 8 N -0.70 -22.24 4.42 -445.62 -1.97 -24.21 16 9 C 0.56 21.09 5.95 86.72 0.52 21.60 16 10 O -0.56 -27.28 14.11 -3.97 -0.06 -27.34 16 11 C -0.15 -4.37 5.66 -19.99 -0.11 -4.49 16 12 C -0.08 -1.78 9.71 22.52 0.22 -1.56 16 13 C -0.11 -1.54 10.02 22.24 0.22 -1.31 16 14 C -0.06 -0.60 10.03 22.30 0.22 -0.37 16 15 C -0.12 -1.57 9.47 22.35 0.21 -1.36 16 16 C 0.15 3.64 6.69 38.45 0.26 3.90 16 17 N -0.33 -9.19 3.81 -186.57 -0.71 -9.90 16 18 C 0.03 0.51 10.92 83.24 0.91 1.42 16 19 C -0.09 -1.87 11.86 83.70 0.99 -0.88 16 20 N -0.29 -9.80 12.33 -58.71 -0.72 -10.52 16 21 N -0.07 -2.62 9.50 37.02 0.35 -2.27 16 22 N -0.75 -35.70 4.30 -322.94 -1.39 -37.08 16 23 C -0.21 -12.22 10.41 84.03 0.87 -11.35 16 24 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 25 C -0.06 -3.98 5.50 84.86 0.47 -3.51 16 26 N -0.98 -66.14 13.97 21.65 0.30 -65.84 16 27 Si 0.94 49.83 27.74 68.60 1.90 51.73 16 28 H -0.30 -16.56 7.11 99.48 0.71 -15.85 16 29 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 30 H -0.25 -11.69 6.52 99.48 0.65 -11.05 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.41 9.98 8.54 -92.71 -0.79 9.19 16 40 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.19 0.10 8.06 -2.91 -0.02 0.07 16 43 H 0.18 0.73 6.88 -2.91 -0.02 0.71 16 44 H 0.25 1.01 7.22 -2.91 -0.02 0.99 16 45 H 0.22 2.72 8.06 -2.91 -0.02 2.69 16 46 H 0.36 17.12 5.66 -92.71 -0.52 16.59 16 47 H 0.25 16.41 8.31 -92.71 -0.77 15.64 16 Total: -1.00 -97.26 392.38 3.85 -93.41 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.37 Total: 29.90 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.52 Total: 2.13 kcal Atomic # 7 Polarization: -145.69 SS G_CDS: -4.14 Total: -149.83 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 1.90 Total: 51.73 kcal Total: -97.26 3.85 -93.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146820686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.711 kcal (2) G-P(sol) polarization free energy of solvation -97.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds