Wall clock time and date at job start Wed Apr 1 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.30184 * 2 1 4 4 C 1.54383 * 110.34070 * 237.71258 * 2 1 3 5 5 N 1.48142 * 104.61962 * 217.26077 * 4 2 1 6 6 C 1.34775 * 127.84253 * 219.56696 * 5 4 2 7 7 O 1.21587 * 120.00474 * 173.92715 * 6 5 4 8 8 C 1.47612 * 119.99770 * 353.92572 * 6 5 4 9 9 C 1.41812 * 119.97825 * 338.28598 * 8 6 5 10 10 C 1.35644 * 119.59654 * 179.71449 * 9 8 6 11 11 C 1.41042 * 119.40133 * 0.55913 * 10 9 8 12 12 N 1.32193 * 133.25854 * 179.68755 * 11 10 9 13 13 N 1.28649 * 109.56593 * 180.02562 * 12 11 10 14 14 C 1.30720 * 110.34290 * 0.02562 * 13 12 11 15 15 N 1.36255 * 107.45476 * 359.97438 * 14 13 12 16 16 C 1.35845 * 133.53041 * 179.97438 * 15 14 13 17 17 C 1.48143 * 104.32001 * 39.58763 * 5 4 2 18 18 C 1.54280 * 110.34483 * 122.17497 * 2 1 3 19 19 C 1.53006 * 110.34148 * 359.97438 * 18 2 1 20 20 C 1.52998 * 110.34514 * 237.84754 * 18 2 1 21 21 N 1.46502 * 109.47503 * 179.97438 * 20 18 2 22 22 C 1.36930 * 120.00248 * 179.97438 * 21 20 18 23 23 H 1.08008 * 120.00016 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00156 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99787 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00054 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47271 * 90.00410 * 26 24 22 28 28 H 1.48504 * 109.47036 * 210.00032 * 26 24 22 29 29 H 1.48505 * 109.47391 * 330.00136 * 26 24 22 30 30 H 1.09008 * 109.46474 * 297.82491 * 1 2 3 31 31 H 1.08996 * 109.47003 * 57.81872 * 1 2 3 32 32 H 1.08995 * 109.47038 * 177.82918 * 1 2 3 33 33 H 1.08998 * 110.41114 * 336.04881 * 4 2 1 34 34 H 1.09003 * 110.40707 * 98.47654 * 4 2 1 35 35 H 1.08003 * 120.20184 * 0.02562 * 9 8 6 36 36 H 1.07998 * 120.29964 * 180.26995 * 10 9 8 37 37 H 1.08001 * 126.27334 * 180.02562 * 14 13 12 38 38 H 1.08010 * 119.80731 * 0.04244 * 16 15 14 39 39 H 1.09007 * 110.40671 * 201.62943 * 17 5 4 40 40 H 1.08993 * 110.51001 * 79.25182 * 17 5 4 41 41 H 1.08999 * 109.47022 * 59.99766 * 19 18 2 42 42 H 1.09003 * 109.46947 * 180.02562 * 19 18 2 43 43 H 1.09002 * 109.46824 * 299.99805 * 19 18 2 44 44 H 1.09005 * 109.46856 * 300.00049 * 20 18 2 45 45 H 1.09000 * 109.46955 * 59.99504 * 20 18 2 46 46 H 0.96998 * 119.99283 * 0.02562 * 21 20 18 47 47 H 0.97001 * 120.00165 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7732 -1.2237 5 7 3.2664 -1.4824 -0.7213 6 6 4.4423 -1.6680 -1.3531 7 8 5.3750 -2.1791 -0.7640 8 6 4.5977 -1.2509 -2.7606 9 6 3.4536 -1.0937 -3.5835 10 6 3.6050 -0.7044 -4.8741 11 6 4.9011 -0.4737 -5.3802 12 7 5.3588 -0.1022 -6.5634 13 7 6.6427 -0.0299 -6.5255 14 6 7.0806 -0.3460 -5.3351 15 7 5.9955 -0.6387 -4.5647 16 6 5.8430 -1.0232 -3.2708 17 6 2.8801 -1.9416 0.6332 18 6 2.0664 -0.7703 1.2244 19 6 0.9062 -1.3009 2.0690 20 6 2.9672 0.1335 2.0686 21 7 3.4649 -0.6159 3.2250 22 6 4.2959 -0.0088 4.1282 23 1 4.5842 1.0227 3.9884 24 6 4.7670 -0.7187 5.2241 25 7 4.4153 -1.9755 5.3947 26 14 5.9002 0.1097 6.4566 27 1 5.0890 0.7414 7.5281 28 1 6.8068 -0.9033 7.0542 29 1 6.7057 1.1497 5.7674 30 1 -0.3632 0.4797 0.9089 31 1 -0.3633 0.5473 -0.8697 32 1 -0.3633 -1.0269 -0.0389 33 1 1.3235 -1.4876 -1.5779 34 1 2.3400 -0.0814 -2.0205 35 1 2.4673 -1.2778 -3.1837 36 1 2.7412 -0.5769 -5.5096 37 1 8.1133 -0.3699 -5.0197 38 1 6.7121 -1.1488 -2.6420 39 1 3.7673 -2.1313 1.2376 40 1 2.2646 -2.8389 0.5711 41 1 0.2953 -1.9727 1.4660 42 1 1.3007 -1.8416 2.9294 43 1 0.2961 -0.4659 2.4137 44 1 3.8092 0.4728 1.4653 45 1 2.3962 0.9957 2.4132 46 1 3.2062 -1.5423 3.3503 47 1 4.7448 -2.4717 6.1603 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182896728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:55 Heat of formation + Delta-G solvation = 87.500122 kcal Electronic energy + Delta-G solvation = -30196.796746 eV Core-core repulsion = 26188.659964 eV Total energy + Delta-G solvation = -4008.136782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.71038 -41.72382 -39.96748 -38.66510 -36.58582 -35.39208 -34.56650 -33.14997 -32.61860 -31.15432 -30.58567 -28.38599 -27.64380 -26.83166 -25.58689 -25.04077 -24.70752 -23.64164 -22.53129 -21.12383 -19.78439 -19.68885 -19.08439 -18.50550 -17.76579 -17.44370 -17.30987 -16.81642 -16.69615 -16.14044 -15.99689 -15.89558 -15.41953 -15.20056 -15.05763 -14.80106 -14.52665 -14.21202 -13.91395 -13.66998 -13.34562 -13.17042 -13.03572 -12.92821 -12.90323 -12.71269 -12.59131 -12.55663 -12.43792 -12.24545 -12.07813 -11.95282 -11.78795 -11.54971 -11.26139 -11.22198 -11.13135 -10.95315 -10.80419 -9.83875 -9.29860 -8.98817 -7.96557 -5.23747 -0.71734 -0.22370 0.99140 1.30730 1.43769 1.45549 1.53601 1.72940 1.83730 2.29487 2.53869 2.92405 3.15780 3.36177 3.38173 3.47482 3.57652 3.58990 3.72373 3.78189 3.80959 4.13821 4.18009 4.24721 4.37258 4.42426 4.53117 4.55668 4.66240 4.72333 4.76879 4.80960 4.84185 4.87073 4.89351 4.92549 5.03306 5.06352 5.17677 5.18784 5.24557 5.35424 5.44279 5.49482 5.50790 5.62562 5.72226 6.26357 6.43928 6.91987 7.30851 7.33118 8.10120 8.33270 9.26831 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.002899 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.154722 B = 9654.875056 C =11174.357508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.077 0.923 4 C 0.089 3.911 5 N -0.608 5.608 6 C 0.581 3.419 7 O -0.580 6.580 8 C -0.146 4.146 9 C -0.063 4.063 10 C -0.078 4.078 11 C 0.191 3.809 12 N -0.328 5.328 13 N -0.289 5.289 14 C 0.139 3.861 15 N -0.401 5.401 16 C 0.140 3.860 17 C 0.116 3.884 18 C -0.069 4.069 19 C -0.128 4.128 20 C 0.169 3.831 21 N -0.738 5.738 22 C -0.244 4.244 23 H 0.068 0.932 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.283 1.283 28 H -0.296 1.296 29 H -0.274 1.274 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.194 0.806 36 H 0.195 0.805 37 H 0.269 0.731 38 H 0.191 0.809 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.029 0.971 43 H 0.066 0.934 44 H -0.002 1.002 45 H 0.021 0.979 46 H 0.377 0.623 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 2.232 -21.338 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.096 0.904 4 C -0.032 4.032 5 N -0.339 5.339 6 C 0.370 3.630 7 O -0.461 6.461 8 C -0.153 4.153 9 C -0.087 4.087 10 C -0.098 4.098 11 C -0.059 4.059 12 N -0.172 5.172 13 N -0.125 5.125 14 C -0.144 4.144 15 N -0.081 5.081 16 C 0.014 3.986 17 C -0.007 4.007 18 C -0.070 4.070 19 C -0.185 4.185 20 C 0.042 3.958 21 N -0.382 5.382 22 C -0.376 4.376 23 H 0.086 0.914 24 C -0.266 4.266 25 N -0.617 5.617 26 Si 0.799 3.201 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.211 0.789 36 H 0.212 0.788 37 H 0.284 0.716 38 H 0.208 0.792 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.016 0.984 45 H 0.039 0.961 46 H 0.210 0.790 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.616 2.588 -22.678 24.397 hybrid contribution 1.439 -0.421 2.714 3.100 sum -7.177 2.167 -19.964 21.325 Atomic orbital electron populations 1.21890 0.91382 1.03404 1.02869 1.22156 0.98170 0.98955 0.91795 0.90449 1.23329 0.85821 0.96672 0.97349 1.48741 1.13164 1.54674 1.17295 1.17647 0.81136 0.78630 0.85559 1.90868 1.40074 1.46875 1.68304 1.19297 0.93947 1.07787 0.94286 1.21948 0.99723 0.95061 0.91991 1.20591 0.92659 1.00565 0.96022 1.23143 0.91527 1.02833 0.88435 1.74846 1.02701 1.22423 1.17224 1.74112 1.03832 1.16244 1.18362 1.27485 0.95575 1.04464 0.86840 1.43968 1.09561 1.44281 1.10258 1.21809 1.00494 0.93943 0.82360 1.22457 0.98665 0.97318 0.82226 1.21615 0.95172 0.94685 0.95544 1.21836 0.96443 1.01416 0.98805 1.20780 0.93837 0.93718 0.87444 1.42560 1.57063 1.12840 1.25699 1.19559 1.20335 0.95771 1.01978 0.91358 1.25498 1.03158 0.96804 1.01093 1.69796 1.50609 1.09777 1.31506 0.85202 0.78517 0.77183 0.79239 1.21033 1.22235 1.19935 0.92535 0.90209 0.90694 0.86338 0.87178 0.78944 0.78762 0.71566 0.79230 0.93616 0.88904 0.89359 0.95150 0.91494 0.98434 0.96064 0.78991 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 7.94 71.98 0.57 -0.90 16 2 C -0.09 -1.52 3.31 -9.89 -0.03 -1.55 16 3 H 0.08 1.42 7.71 -2.39 -0.02 1.41 16 4 C 0.09 1.10 4.60 86.53 0.40 1.50 16 5 N -0.61 -14.18 3.31 -811.63 -2.69 -16.87 16 6 C 0.58 15.67 7.72 86.72 0.67 16.33 16 7 O -0.58 -21.90 16.72 -3.99 -0.07 -21.96 16 8 C -0.15 -2.73 5.71 -20.33 -0.12 -2.84 16 9 C -0.06 -0.72 7.97 22.55 0.18 -0.54 16 10 C -0.08 -0.95 10.09 22.36 0.23 -0.72 16 11 C 0.19 3.84 7.92 134.11 1.06 4.90 16 12 N -0.33 -8.41 12.29 -55.23 -0.68 -9.09 16 13 N -0.29 -7.15 12.18 -59.41 -0.72 -7.87 16 14 C 0.14 2.45 12.97 179.81 2.33 4.78 16 15 N -0.40 -7.49 2.94 -355.22 -1.04 -8.54 16 16 C 0.14 2.56 10.52 83.66 0.88 3.44 16 17 C 0.12 3.39 5.94 86.53 0.51 3.90 16 18 C -0.07 -1.85 0.73 -51.27 -0.04 -1.89 16 19 C -0.13 -3.22 7.11 71.98 0.51 -2.71 16 20 C 0.17 6.55 4.95 86.38 0.43 6.98 16 21 N -0.74 -37.25 4.79 -343.44 -1.64 -38.90 16 22 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 23 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 24 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 25 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 26 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 27 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 30 H 0.06 0.76 6.80 -2.38 -0.02 0.74 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.64 6.75 -2.39 -0.02 0.62 16 33 H 0.12 0.66 7.52 -2.39 -0.02 0.64 16 34 H 0.11 0.89 5.68 -2.39 -0.01 0.87 16 35 H 0.19 0.91 4.84 -2.91 -0.01 0.90 16 36 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 37 H 0.27 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.19 3.25 7.72 -2.91 -0.02 3.22 16 39 H 0.05 1.88 6.90 -2.38 -0.02 1.87 16 40 H 0.09 2.29 7.83 -2.39 -0.02 2.27 16 41 H 0.09 1.57 6.75 -2.39 -0.02 1.55 16 42 H 0.03 1.00 6.74 -2.39 -0.02 0.99 16 43 H 0.07 1.60 6.80 -2.39 -0.02 1.59 16 44 H 0.00 -0.10 8.14 -2.38 -0.02 -0.11 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.38 20.01 5.99 -92.71 -0.55 19.46 16 47 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -84.53 373.85 4.82 -79.71 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.46 Total: 19.95 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 8.89 Total: 13.84 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -6.50 Total: -140.60 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -84.53 4.82 -79.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182896728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.210 kcal (2) G-P(sol) polarization free energy of solvation -84.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds