Wall clock time and date at job start Wed Apr 1 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.30392 * 2 1 4 4 C 1.54385 * 110.34673 * 237.71032 * 2 1 3 5 5 N 1.48145 * 104.61834 * 217.25936 * 4 2 1 6 6 C 1.34772 * 127.83743 * 219.59905 * 5 4 2 7 7 O 1.21574 * 119.99649 * 173.90372 * 6 5 4 8 8 C 1.47713 * 120.00370 * 353.90712 * 6 5 4 9 9 C 1.40257 * 119.87903 * 337.81328 * 8 6 5 10 10 C 1.36155 * 120.55895 * 179.69351 * 9 8 6 11 11 C 1.39913 * 119.97590 * 0.60256 * 10 9 8 12 12 N 1.34750 * 134.59735 * 179.68328 * 11 10 9 13 13 N 1.28637 * 109.29722 * 179.97438 * 12 11 10 14 14 N 1.28817 * 111.79058 * 359.97438 * 13 12 11 15 15 H 0.97005 * 125.94008 * 180.02562 * 14 13 12 16 16 C 1.37361 * 108.11264 * 359.97438 * 14 13 12 17 17 C 1.38626 * 134.88593 * 179.97438 * 16 14 13 18 18 C 1.48147 * 104.32160 * 39.58429 * 5 4 2 19 19 C 1.54289 * 110.34478 * 122.16713 * 2 1 3 20 20 C 1.52999 * 110.33783 * 0.02562 * 19 2 1 21 21 C 1.52993 * 110.34429 * 237.85031 * 19 2 1 22 22 N 1.46506 * 109.46892 * 179.97438 * 21 19 2 23 23 C 1.36936 * 119.99747 * 179.97438 * 22 21 19 24 24 H 1.07996 * 120.00537 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99834 * 180.02562 * 23 22 21 26 26 N 1.31623 * 120.00245 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00063 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47384 * 60.00026 * 27 25 23 29 29 H 1.48510 * 109.47167 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46897 * 299.99784 * 27 25 23 31 31 H 1.09004 * 109.47334 * 297.82627 * 1 2 3 32 32 H 1.08999 * 109.47384 * 57.83192 * 1 2 3 33 33 H 1.08997 * 109.47151 * 177.82810 * 1 2 3 34 34 H 1.09002 * 110.40211 * 336.04278 * 4 2 1 35 35 H 1.09000 * 110.40869 * 98.47107 * 4 2 1 36 36 H 1.08000 * 119.71830 * 359.97438 * 9 8 6 37 37 H 1.07996 * 120.01975 * 180.28214 * 10 9 8 38 38 H 1.08002 * 120.24627 * 0.04844 * 17 16 14 39 39 H 1.09000 * 110.40533 * 201.62379 * 18 5 4 40 40 H 1.09001 * 110.50739 * 79.24902 * 18 5 4 41 41 H 1.09003 * 109.47306 * 59.99870 * 20 19 2 42 42 H 1.09006 * 109.46566 * 179.97438 * 20 19 2 43 43 H 1.08998 * 109.47225 * 299.99566 * 20 19 2 44 44 H 1.08997 * 109.47239 * 299.99574 * 21 19 2 45 45 H 1.08999 * 109.47299 * 59.99994 * 21 19 2 46 46 H 0.96999 * 119.99846 * 0.02562 * 22 21 19 47 47 H 0.96996 * 120.00340 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7733 -1.2237 5 7 3.2665 -1.4823 -0.7211 6 6 4.4426 -1.6673 -1.3526 7 8 5.3753 -2.1779 -0.7632 8 6 4.5985 -1.2497 -2.7609 9 6 3.4664 -1.1048 -3.5761 10 6 3.5935 -0.7146 -4.8744 11 6 4.8626 -0.4668 -5.4087 12 7 5.3226 -0.0849 -6.6163 13 7 6.6056 -0.0012 -6.5755 14 7 7.0676 -0.3015 -5.4111 15 1 8.0028 -0.3057 -5.1534 16 6 6.0056 -0.6137 -4.5978 17 6 5.8682 -1.0043 -3.2749 18 6 2.8802 -1.9414 0.6335 19 6 2.0664 -0.7702 1.2246 20 6 0.9062 -1.3017 2.0685 21 6 2.9670 0.1337 2.0687 22 7 3.4647 -0.6156 3.2251 23 6 4.2957 -0.0084 4.1283 24 1 4.5840 1.0230 3.9885 25 6 4.7677 -0.7185 5.2237 26 7 4.4168 -1.9756 5.3940 27 14 5.9007 0.1101 6.4562 28 1 5.2088 1.2785 7.0572 29 1 6.2599 -0.8558 7.5256 30 1 7.1339 0.5662 5.7660 31 1 -0.3634 0.4797 0.9089 32 1 -0.3634 0.5471 -0.8699 33 1 -0.3633 -1.0269 -0.0389 34 1 1.3235 -1.4877 -1.5777 35 1 2.3400 -0.0815 -2.0205 36 1 2.4852 -1.3000 -3.1693 37 1 2.7156 -0.6014 -5.4930 38 1 6.7404 -1.1195 -2.6483 39 1 3.7673 -2.1311 1.2378 40 1 2.2647 -2.8388 0.5714 41 1 0.2960 -1.9738 1.4651 42 1 1.3007 -1.8431 2.9284 43 1 0.2954 -0.4673 2.4130 44 1 3.8091 0.4730 1.4655 45 1 2.3961 0.9959 2.4132 46 1 3.2061 -1.5420 3.3505 47 1 4.7463 -2.4717 6.1596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183362119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:50 Heat of formation + Delta-G solvation = 107.360252 kcal Electronic energy + Delta-G solvation = -30101.758924 eV Core-core repulsion = 26094.483342 eV Total energy + Delta-G solvation = -4007.275582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.57121 -40.60621 -38.79543 -37.42577 -34.86138 -34.21407 -33.37762 -31.62141 -31.09296 -30.85278 -29.57916 -27.27886 -26.15884 -25.73134 -24.39507 -23.85634 -23.20177 -22.76350 -21.24553 -20.11970 -18.72142 -18.63355 -18.35868 -17.22298 -16.63287 -16.29770 -16.09669 -15.80177 -15.11462 -14.89304 -14.54498 -14.44632 -14.22343 -14.01468 -13.69821 -13.38035 -13.05060 -12.84513 -12.74095 -12.57311 -12.52911 -12.32037 -11.94318 -11.78823 -11.59265 -11.54037 -11.44781 -11.24993 -11.15729 -10.96666 -10.79607 -10.46124 -10.33323 -10.22129 -9.96013 -9.91301 -9.58042 -9.35488 -8.87689 -8.84120 -8.60627 -6.88840 -5.73750 -3.01718 -0.00933 0.77894 1.78974 2.08204 2.69900 2.88633 3.41177 3.46018 3.50366 3.51260 3.61229 4.18287 4.20924 4.50257 4.51598 4.57702 4.67604 4.70747 4.74073 4.84233 5.01043 5.25417 5.29363 5.33645 5.42501 5.47543 5.54670 5.58529 5.64548 5.69093 5.72392 5.82398 5.84438 5.92311 6.00882 6.08372 6.13828 6.16727 6.20997 6.30270 6.37997 6.42264 6.52112 6.69656 6.79236 6.87577 7.56273 7.72134 7.85933 8.12923 8.45315 9.56561 10.13539 10.48175 11.49157 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012827 B = 0.002872 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.326782 B = 9745.407481 C =11269.038105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.083 0.917 4 C 0.092 3.908 5 N -0.611 5.611 6 C 0.576 3.424 7 O -0.523 6.523 8 C -0.088 4.088 9 C -0.101 4.101 10 C -0.055 4.055 11 C 0.025 3.975 12 N -0.253 5.253 13 N -0.010 5.010 14 N -0.412 5.412 15 H 0.455 0.545 16 C 0.019 3.981 17 C -0.038 4.038 18 C 0.113 3.887 19 C -0.076 4.076 20 C -0.134 4.134 21 C 0.169 3.831 22 N -0.728 5.728 23 C -0.238 4.238 24 H 0.068 0.932 25 C -0.012 4.012 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.287 1.287 29 H -0.291 1.291 30 H -0.287 1.287 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 2.055 -21.642 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.030 4.030 5 N -0.344 5.344 6 C 0.364 3.636 7 O -0.399 6.399 8 C -0.095 4.095 9 C -0.122 4.122 10 C -0.078 4.078 11 C -0.100 4.100 12 N -0.129 5.129 13 N 0.008 4.992 14 N -0.140 5.140 15 H 0.302 0.698 16 C -0.101 4.101 17 C -0.061 4.061 18 C -0.008 4.008 19 C -0.077 4.077 20 C -0.192 4.192 21 C 0.041 3.959 22 N -0.374 5.374 23 C -0.369 4.369 24 H 0.086 0.914 25 C -0.208 4.208 26 N -0.582 5.582 27 Si 0.737 3.263 28 H -0.214 1.214 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.171 0.829 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.063 2.303 -22.746 23.416 hybrid contribution 1.084 -0.107 1.970 2.251 sum -3.980 2.196 -20.776 21.268 Atomic orbital electron populations 1.21899 0.94032 1.02086 1.01930 1.22176 0.96133 0.99830 0.93718 0.89867 1.22915 0.86916 0.95695 0.97517 1.48714 1.12343 1.55193 1.18111 1.17582 0.81359 0.79443 0.85223 1.90869 1.38141 1.44079 1.66846 1.19759 0.93097 1.02339 0.94316 1.21424 0.99270 0.98400 0.93099 1.19947 0.94355 0.98647 0.94811 1.20107 0.94880 1.04293 0.90734 1.75374 1.00249 1.17847 1.19432 1.77978 1.06360 1.12017 1.02844 1.44890 1.10539 1.50846 1.07774 0.69773 1.19634 0.88093 1.07026 0.95309 1.20100 0.98314 0.96915 0.90753 1.22608 1.00594 0.95882 0.81748 1.21708 0.96000 0.95405 0.94568 1.21875 0.96571 1.00917 0.99811 1.20645 0.93711 0.92944 0.88579 1.42376 1.57384 1.12864 1.24729 1.19141 1.20544 0.95655 1.01571 0.91444 1.24704 1.01079 0.96076 0.98982 1.69633 1.49090 1.08431 1.31034 0.86285 0.80811 0.78148 0.81040 1.21356 1.21706 1.21348 0.91624 0.92968 0.92090 0.90509 0.89582 0.82908 0.83677 0.83476 0.88050 0.91210 0.93061 0.91248 0.92115 0.96523 0.96208 0.78098 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.94 37.16 0.30 -0.90 16 2 C -0.10 -1.06 3.31 -89.22 -0.30 -1.36 16 3 H 0.08 0.94 7.71 -51.93 -0.40 0.54 16 4 C 0.09 0.86 4.60 -2.41 -0.01 0.85 16 5 N -0.61 -8.24 3.31 -170.47 -0.56 -8.81 16 6 C 0.58 8.63 7.71 -12.39 -0.10 8.53 16 7 O -0.52 -10.18 16.78 5.30 0.09 -10.09 16 8 C -0.09 -1.01 5.75 -104.92 -0.60 -1.61 16 9 C -0.10 -0.87 7.88 -39.57 -0.31 -1.18 16 10 C -0.06 -0.47 10.03 -39.70 -0.40 -0.87 16 11 C 0.03 0.27 7.36 -84.95 -0.63 -0.35 16 12 N -0.25 -3.02 12.42 32.09 0.40 -2.62 16 13 N -0.01 -0.11 13.28 60.35 0.80 0.70 16 14 N -0.41 -3.44 7.08 32.31 0.23 -3.21 16 15 H 0.45 2.01 8.96 -190.23 -1.71 0.30 16 16 C 0.02 0.20 7.40 -84.24 -0.62 -0.43 16 17 C -0.04 -0.41 9.60 -39.09 -0.38 -0.79 16 18 C 0.11 1.76 5.94 -2.41 -0.01 1.75 16 19 C -0.08 -1.10 0.73 -153.11 -0.11 -1.21 16 20 C -0.13 -1.86 7.10 37.16 0.26 -1.60 16 21 C 0.17 3.31 4.95 -4.04 -0.02 3.29 16 22 N -0.73 -18.04 4.79 -59.91 -0.29 -18.33 16 23 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 27 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.06 0.60 6.80 -51.93 -0.35 0.25 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.48 6.75 -51.93 -0.35 0.12 16 34 H 0.08 0.55 7.52 -51.93 -0.39 0.16 16 35 H 0.09 0.67 5.72 -51.93 -0.30 0.37 16 36 H 0.15 0.99 4.82 -52.49 -0.25 0.74 16 37 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.53 7.79 -52.49 -0.41 1.13 16 39 H 0.10 2.06 6.90 -51.93 -0.36 1.70 16 40 H 0.07 0.96 7.83 -51.93 -0.41 0.56 16 41 H 0.05 0.57 6.75 -51.93 -0.35 0.22 16 42 H 0.07 1.18 6.74 -51.93 -0.35 0.83 16 43 H 0.06 0.81 6.80 -51.93 -0.35 0.45 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.38 9.89 5.99 -40.82 -0.24 9.64 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -35.47 373.11 -8.64 -44.11 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.46 Total: 5.59 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.17 Total: -3.15 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 1.30 Total: -59.75 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.47 -8.64 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183362119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.475 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds