Wall clock time and date at job start Wed Apr 1 2020 01:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.30392 * 2 1 4 4 C 1.54385 * 110.34673 * 237.71032 * 2 1 3 5 5 N 1.48145 * 104.61834 * 217.25936 * 4 2 1 6 6 C 1.34772 * 127.83743 * 219.59905 * 5 4 2 7 7 O 1.21574 * 119.99649 * 173.90372 * 6 5 4 8 8 C 1.47713 * 120.00370 * 353.90712 * 6 5 4 9 9 C 1.40257 * 119.87903 * 337.81328 * 8 6 5 10 10 C 1.36155 * 120.55895 * 179.69351 * 9 8 6 11 11 C 1.39913 * 119.97590 * 0.60256 * 10 9 8 12 12 N 1.34750 * 134.59735 * 179.68328 * 11 10 9 13 13 N 1.28637 * 109.29722 * 179.97438 * 12 11 10 14 14 N 1.28817 * 111.79058 * 359.97438 * 13 12 11 15 15 H 0.97005 * 125.94008 * 180.02562 * 14 13 12 16 16 C 1.37361 * 108.11264 * 359.97438 * 14 13 12 17 17 C 1.38626 * 134.88593 * 179.97438 * 16 14 13 18 18 C 1.48147 * 104.32160 * 39.58429 * 5 4 2 19 19 C 1.54289 * 110.34478 * 122.16713 * 2 1 3 20 20 C 1.52999 * 110.33783 * 0.02562 * 19 2 1 21 21 C 1.52993 * 110.34429 * 237.85031 * 19 2 1 22 22 N 1.46506 * 109.46892 * 179.97438 * 21 19 2 23 23 C 1.36936 * 119.99747 * 179.97438 * 22 21 19 24 24 H 1.07996 * 120.00537 * 0.02562 * 23 22 21 25 25 C 1.38810 * 119.99834 * 180.02562 * 23 22 21 26 26 N 1.31623 * 120.00245 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00063 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47384 * 60.00026 * 27 25 23 29 29 H 1.48510 * 109.47167 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.46897 * 299.99784 * 27 25 23 31 31 H 1.09004 * 109.47334 * 297.82627 * 1 2 3 32 32 H 1.08999 * 109.47384 * 57.83192 * 1 2 3 33 33 H 1.08997 * 109.47151 * 177.82810 * 1 2 3 34 34 H 1.09002 * 110.40211 * 336.04278 * 4 2 1 35 35 H 1.09000 * 110.40869 * 98.47107 * 4 2 1 36 36 H 1.08000 * 119.71830 * 359.97438 * 9 8 6 37 37 H 1.07996 * 120.01975 * 180.28214 * 10 9 8 38 38 H 1.08002 * 120.24627 * 0.04844 * 17 16 14 39 39 H 1.09000 * 110.40533 * 201.62379 * 18 5 4 40 40 H 1.09001 * 110.50739 * 79.24902 * 18 5 4 41 41 H 1.09003 * 109.47306 * 59.99870 * 20 19 2 42 42 H 1.09006 * 109.46566 * 179.97438 * 20 19 2 43 43 H 1.08998 * 109.47225 * 299.99566 * 20 19 2 44 44 H 1.08997 * 109.47239 * 299.99574 * 21 19 2 45 45 H 1.08999 * 109.47299 * 59.99994 * 21 19 2 46 46 H 0.96999 * 119.99846 * 0.02562 * 22 21 19 47 47 H 0.96996 * 120.00340 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7733 -1.2237 5 7 3.2665 -1.4823 -0.7211 6 6 4.4426 -1.6673 -1.3526 7 8 5.3753 -2.1779 -0.7632 8 6 4.5985 -1.2497 -2.7609 9 6 3.4664 -1.1048 -3.5761 10 6 3.5935 -0.7146 -4.8744 11 6 4.8626 -0.4668 -5.4087 12 7 5.3226 -0.0849 -6.6163 13 7 6.6056 -0.0012 -6.5755 14 7 7.0676 -0.3015 -5.4111 15 1 8.0028 -0.3057 -5.1534 16 6 6.0056 -0.6137 -4.5978 17 6 5.8682 -1.0043 -3.2749 18 6 2.8802 -1.9414 0.6335 19 6 2.0664 -0.7702 1.2246 20 6 0.9062 -1.3017 2.0685 21 6 2.9670 0.1337 2.0687 22 7 3.4647 -0.6156 3.2251 23 6 4.2957 -0.0084 4.1283 24 1 4.5840 1.0230 3.9885 25 6 4.7677 -0.7185 5.2237 26 7 4.4168 -1.9756 5.3940 27 14 5.9007 0.1101 6.4562 28 1 5.2088 1.2785 7.0572 29 1 6.2599 -0.8558 7.5256 30 1 7.1339 0.5662 5.7660 31 1 -0.3634 0.4797 0.9089 32 1 -0.3634 0.5471 -0.8699 33 1 -0.3633 -1.0269 -0.0389 34 1 1.3235 -1.4877 -1.5777 35 1 2.3400 -0.0815 -2.0205 36 1 2.4852 -1.3000 -3.1693 37 1 2.7156 -0.6014 -5.4930 38 1 6.7404 -1.1195 -2.6483 39 1 3.7673 -2.1311 1.2378 40 1 2.2647 -2.8388 0.5714 41 1 0.2960 -1.9738 1.4651 42 1 1.3007 -1.8431 2.9284 43 1 0.2954 -0.4673 2.4130 44 1 3.8091 0.4730 1.4655 45 1 2.3961 0.9959 2.4132 46 1 3.2061 -1.5420 3.3505 47 1 4.7463 -2.4717 6.1596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183362119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:49 Heat of formation + Delta-G solvation = 81.583017 kcal Electronic energy + Delta-G solvation = -30102.876708 eV Core-core repulsion = 26094.483342 eV Total energy + Delta-G solvation = -4008.393367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.34537 -41.67830 -39.85746 -38.40236 -36.52559 -34.99221 -34.75913 -33.13924 -32.05849 -31.63637 -31.02292 -28.31735 -27.58512 -26.77912 -25.54397 -25.02955 -24.42056 -23.56424 -22.46945 -21.08565 -19.73484 -19.62936 -19.45136 -18.93199 -17.48956 -17.34016 -17.10529 -16.81456 -16.66836 -16.06172 -15.91254 -15.43905 -15.25359 -15.15448 -15.00036 -14.73371 -14.51321 -14.13697 -13.87401 -13.39516 -13.37440 -13.17008 -13.12282 -12.90058 -12.87991 -12.72337 -12.57404 -12.54920 -12.37835 -12.28482 -12.10223 -11.95363 -11.94523 -11.52266 -11.21752 -11.13348 -11.11333 -10.94533 -10.16052 -9.82585 -9.51648 -8.98917 -7.96288 -5.23733 -0.82816 0.05053 0.94177 1.36980 1.42910 1.46467 1.52348 1.72919 1.89047 2.53727 2.55280 2.86898 3.29066 3.36746 3.45850 3.60025 3.63256 3.75812 3.82547 3.92873 3.96210 4.17704 4.23117 4.28184 4.38830 4.45576 4.59442 4.67239 4.72674 4.76911 4.80172 4.85860 4.90679 4.94032 5.03953 5.05199 5.08023 5.12061 5.19836 5.26513 5.36597 5.43952 5.46646 5.50682 5.51942 5.73640 5.77216 6.26379 6.50308 7.00512 7.07090 7.32901 8.10097 8.33473 9.26990 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012827 B = 0.002872 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.326782 B = 9745.407481 C =11269.038105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.077 0.923 4 C 0.089 3.911 5 N -0.610 5.610 6 C 0.569 3.431 7 O -0.586 6.586 8 C -0.097 4.097 9 C -0.089 4.089 10 C -0.044 4.044 11 C 0.014 3.986 12 N -0.276 5.276 13 N -0.017 5.017 14 N -0.395 5.395 15 H 0.469 0.531 16 C 0.013 3.987 17 C -0.044 4.044 18 C 0.115 3.885 19 C -0.069 4.069 20 C -0.127 4.127 21 C 0.169 3.831 22 N -0.738 5.738 23 C -0.246 4.246 24 H 0.068 0.932 25 C -0.074 4.074 26 N -0.967 5.967 27 Si 0.971 3.029 28 H -0.275 1.275 29 H -0.293 1.293 30 H -0.284 1.284 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.183 0.817 37 H 0.180 0.820 38 H 0.139 0.861 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.029 0.971 43 H 0.067 0.933 44 H -0.004 1.004 45 H 0.023 0.977 46 H 0.376 0.624 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 3.137 -24.008 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.031 4.031 5 N -0.341 5.341 6 C 0.359 3.641 7 O -0.467 6.467 8 C -0.104 4.104 9 C -0.109 4.109 10 C -0.066 4.066 11 C -0.112 4.112 12 N -0.151 5.151 13 N 0.001 4.999 14 N -0.126 5.126 15 H 0.320 0.680 16 C -0.107 4.107 17 C -0.067 4.067 18 C -0.008 4.008 19 C -0.070 4.070 20 C -0.184 4.184 21 C 0.042 3.958 22 N -0.382 5.382 23 C -0.378 4.378 24 H 0.086 0.914 25 C -0.266 4.266 26 N -0.617 5.617 27 Si 0.800 3.200 28 H -0.200 1.200 29 H -0.219 1.219 30 H -0.210 1.210 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.200 0.800 37 H 0.197 0.803 38 H 0.157 0.843 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.014 0.986 45 H 0.040 0.960 46 H 0.210 0.790 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.654 3.443 -25.156 26.519 hybrid contribution 1.917 -0.401 2.667 3.309 sum -5.737 3.041 -22.489 23.408 Atomic orbital electron populations 1.21884 0.91314 1.03384 1.02883 1.22168 0.98210 0.98934 0.91798 0.90472 1.23319 0.85758 0.96675 0.97360 1.48811 1.13255 1.54761 1.17232 1.18191 0.80876 0.78554 0.86471 1.90832 1.40284 1.47055 1.68545 1.19575 0.94505 1.03747 0.92584 1.21600 0.99219 0.97437 0.92670 1.20314 0.94532 0.96960 0.94768 1.20549 0.96007 1.04218 0.90416 1.75352 1.00657 1.18951 1.20177 1.77921 1.06356 1.12189 1.03478 1.44930 1.11218 1.49505 1.06977 0.67990 1.19593 0.88684 1.07401 0.95016 1.20048 0.98239 0.97298 0.91072 1.22445 0.98530 0.97351 0.82479 1.21614 0.95163 0.94656 0.95574 1.21832 0.96416 1.01410 0.98776 1.20776 0.93809 0.93754 0.87420 1.42560 1.57073 1.12841 1.25695 1.19539 1.20443 0.95804 1.02057 0.91359 1.25519 1.03137 0.96814 1.01133 1.69794 1.50585 1.09788 1.31566 0.85257 0.78872 0.77353 0.78558 1.20046 1.21903 1.21032 0.92491 0.90158 0.90741 0.86488 0.87069 0.80039 0.80316 0.84290 0.93898 0.89047 0.89376 0.95191 0.91401 0.98617 0.95953 0.79016 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.94 71.98 0.57 -1.06 16 2 C -0.09 -1.67 3.31 -9.89 -0.03 -1.71 16 3 H 0.08 1.54 7.71 -2.39 -0.02 1.52 16 4 C 0.09 1.31 4.60 86.53 0.40 1.70 16 5 N -0.61 -15.86 3.31 -811.50 -2.69 -18.55 16 6 C 0.57 17.30 7.71 86.75 0.67 17.97 16 7 O -0.59 -24.44 16.78 -3.95 -0.07 -24.51 16 8 C -0.10 -2.12 5.75 -20.06 -0.12 -2.23 16 9 C -0.09 -1.20 7.88 22.28 0.18 -1.02 16 10 C -0.04 -0.57 10.03 22.19 0.22 -0.35 16 11 C 0.01 0.27 7.36 39.75 0.29 0.56 16 12 N -0.28 -6.12 12.42 -52.38 -0.65 -6.77 16 13 N -0.02 -0.35 13.28 37.02 0.49 0.14 16 14 N -0.39 -6.24 7.08 -51.69 -0.37 -6.61 16 15 H 0.47 3.84 8.96 -219.81 -1.97 1.87 16 16 C 0.01 0.26 7.40 39.02 0.29 0.55 16 17 C -0.04 -0.94 9.60 22.58 0.22 -0.72 16 18 C 0.11 3.61 5.94 86.53 0.51 4.13 16 19 C -0.07 -1.97 0.73 -51.28 -0.04 -2.00 16 20 C -0.13 -3.36 7.10 71.98 0.51 -2.85 16 21 C 0.17 6.83 4.95 86.38 0.43 7.26 16 22 N -0.74 -38.35 4.79 -343.46 -1.65 -39.99 16 23 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 24 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 25 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 26 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 27 Si 0.97 47.74 29.55 68.60 2.03 49.76 16 28 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 30 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 31 H 0.06 0.81 6.80 -2.39 -0.02 0.80 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.72 6.75 -2.39 -0.02 0.71 16 34 H 0.12 0.90 7.52 -2.39 -0.02 0.88 16 35 H 0.11 1.14 5.72 -2.39 -0.01 1.13 16 36 H 0.18 1.34 4.82 -2.91 -0.01 1.32 16 37 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 38 H 0.14 3.12 7.79 -2.91 -0.02 3.10 16 39 H 0.04 1.87 6.90 -2.39 -0.02 1.85 16 40 H 0.09 2.45 7.83 -2.39 -0.02 2.43 16 41 H 0.09 1.68 6.75 -2.39 -0.02 1.66 16 42 H 0.03 1.03 6.74 -2.38 -0.02 1.01 16 43 H 0.07 1.69 6.80 -2.39 -0.02 1.68 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.38 20.57 5.99 -92.71 -0.56 20.01 16 47 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -83.45 373.11 1.31 -82.13 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -1.48 Total: 21.88 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 5.41 Total: 2.84 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -4.57 Total: -132.11 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.07 Total: -24.51 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.76 kcal Total: -83.45 1.31 -82.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183362119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.718 kcal (2) G-P(sol) polarization free energy of solvation -83.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds