Wall clock time and date at job start Wed Apr 1 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49414 * 2 1 4 4 C 1.53195 * 109.49630 * 239.93681 * 2 1 3 5 5 N 1.46928 * 108.77507 * 294.68258 * 4 2 1 6 6 C 1.34769 * 120.62849 * 126.36880 * 5 4 2 7 7 O 1.21704 * 120.00621 * 4.28051 * 6 5 4 8 8 C 1.46680 * 119.99947 * 184.27375 * 6 5 4 9 9 C 1.40334 * 126.56062 * 310.33403 * 8 6 5 10 10 N 1.31004 * 108.77794 * 180.02562 * 9 8 6 11 11 N 1.39902 * 109.55718 * 359.97438 * 10 9 8 12 12 N 1.40014 * 132.51136 * 180.28997 * 11 10 9 13 13 C 1.30844 * 120.65683 * 180.19370 * 12 11 10 14 14 C 1.39729 * 120.97112 * 359.48909 * 13 12 11 15 15 C 1.36559 * 119.94290 * 0.25770 * 14 13 12 16 16 C 1.36749 * 107.87514 * 0.02562 * 11 10 9 17 17 C 1.46921 * 118.73789 * 306.64341 * 5 4 2 18 18 C 1.52763 * 109.01082 * 53.31143 * 17 5 4 19 19 C 1.53041 * 109.49652 * 120.09807 * 2 1 3 20 20 H 1.08999 * 109.45503 * 178.60526 * 19 2 1 21 21 C 1.52995 * 109.45981 * 298.56552 * 19 2 1 22 22 N 1.46498 * 109.46898 * 184.99994 * 21 19 2 23 23 C 1.36939 * 119.99808 * 180.02562 * 22 21 19 24 24 H 1.08006 * 120.00240 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00183 * 180.02562 * 23 22 21 26 26 N 1.31623 * 120.00437 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99697 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.47381 * 90.00324 * 27 25 23 29 29 H 1.48501 * 109.47124 * 210.00316 * 27 25 23 30 30 H 1.48504 * 109.47598 * 330.00246 * 27 25 23 31 31 H 1.09007 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47266 * 300.06425 * 1 2 3 33 33 H 1.09000 * 109.47328 * 60.06219 * 1 2 3 34 34 H 1.08997 * 109.57977 * 174.89423 * 4 2 1 35 35 H 1.09003 * 109.69969 * 54.54038 * 4 2 1 36 36 H 1.07999 * 125.60700 * 0.03973 * 9 8 6 37 37 H 1.07994 * 119.51259 * 179.72633 * 13 12 11 38 38 H 1.07998 * 120.03032 * 180.23921 * 14 13 12 39 39 H 1.08001 * 120.44613 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.58695 * 173.14374 * 17 5 4 41 41 H 1.09000 * 109.58706 * 293.57101 * 17 5 4 42 42 H 1.08997 * 109.56673 * 185.55203 * 18 17 5 43 43 H 1.09002 * 109.38375 * 65.51332 * 18 17 5 44 44 H 1.09003 * 109.47234 * 305.00148 * 21 19 2 45 45 H 1.09004 * 109.47251 * 65.00067 * 21 19 2 46 46 H 0.96999 * 120.00524 * 0.02562 * 22 21 19 47 47 H 0.96997 * 120.00255 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6516 -2.1378 -1.1702 6 6 0.9740 -2.7211 -2.1787 7 8 0.7472 -2.0987 -3.1997 8 6 0.5100 -4.1062 -2.0459 9 6 1.2758 -5.2088 -1.6369 10 7 0.5157 -6.2757 -1.6428 11 7 -0.7762 -5.9281 -2.0521 12 7 -1.9481 -6.6752 -2.2217 13 6 -3.0519 -6.1019 -2.6279 14 6 -3.0945 -4.7307 -2.8929 15 6 -1.9714 -3.9704 -2.7334 16 6 -0.7891 -4.5842 -2.3046 17 6 2.0091 -2.9025 0.0322 18 6 1.5030 -2.1562 1.2653 19 6 2.0408 -0.7235 1.2481 20 1 3.1305 -0.7448 1.2350 21 6 1.5607 0.0163 2.4984 22 7 2.1468 -0.6051 3.6886 23 6 1.8578 -0.1098 4.9321 24 1 1.1975 0.7386 5.0355 25 6 2.4135 -0.6982 6.0599 26 7 2.1353 -0.2225 7.2553 27 14 3.5549 -2.1660 5.8812 28 1 4.9550 -1.6906 5.7441 29 1 3.4412 -3.0307 7.0832 30 1 3.1759 -2.9439 4.6743 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 3.1275 -0.6458 -1.2982 35 1 1.6027 -0.2730 -2.1403 36 1 2.3199 -5.1820 -1.3622 37 1 -3.9441 -6.6967 -2.7567 38 1 -4.0148 -4.2725 -3.2239 39 1 -1.9953 -2.9097 -2.9356 40 1 1.5473 -3.8889 -0.0112 41 1 3.0926 -3.0063 0.0905 42 1 1.8481 -2.6635 2.1662 43 1 0.4133 -2.1359 1.2540 44 1 1.8696 1.0602 2.4440 45 1 0.4737 -0.0383 2.5579 46 1 2.7395 -1.3673 3.5959 47 1 2.5239 -0.6334 8.0433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184588371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:31 Heat of formation + Delta-G solvation = 126.450305 kcal Electronic energy + Delta-G solvation = -30335.864149 eV Core-core repulsion = 26329.416374 eV Total energy + Delta-G solvation = -4006.447775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30646 -40.34402 -38.44224 -37.93979 -35.12375 -33.76892 -33.44905 -31.96536 -31.56363 -30.71053 -29.98702 -27.34741 -26.85395 -25.23321 -24.16456 -23.69760 -22.95801 -22.40744 -21.19696 -20.09060 -18.71339 -18.45638 -17.73851 -17.54612 -17.01423 -16.56756 -16.21537 -15.80867 -15.41004 -15.03087 -14.62971 -14.38606 -14.23691 -14.11844 -13.89715 -13.66559 -13.47894 -13.15032 -13.03251 -12.81444 -12.75528 -12.41231 -12.31697 -11.84947 -11.65988 -11.50682 -11.39597 -11.30742 -11.06964 -10.91293 -10.83279 -10.50362 -10.34115 -10.18920 -10.11932 -10.10308 -9.86779 -9.58864 -8.89627 -8.74699 -8.47864 -7.22718 -5.77638 -3.12803 -0.21182 0.55258 0.96777 1.83597 2.47173 2.68699 3.04086 3.34731 3.37464 3.43998 3.71184 3.86890 4.03042 4.07817 4.41656 4.54540 4.57720 4.71741 4.78067 4.80997 4.86634 4.91518 5.04057 5.15990 5.29999 5.34505 5.37472 5.46350 5.52103 5.57759 5.61097 5.67699 5.73234 5.74382 5.80523 5.83820 5.93783 6.10209 6.15692 6.26998 6.30470 6.38448 6.52543 6.69150 6.81819 6.86787 6.97829 7.26929 7.99109 8.02659 8.41585 9.20959 9.93258 10.13191 11.41015 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.002968 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.065672 B = 9431.683950 C =10239.295618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.596 5.596 6 C 0.599 3.401 7 O -0.545 6.545 8 C -0.258 4.258 9 C 0.093 3.907 10 N -0.249 5.249 11 N -0.173 5.173 12 N -0.214 5.214 13 C 0.118 3.882 14 C -0.156 4.156 15 C -0.028 4.028 16 C 0.096 3.904 17 C 0.099 3.901 18 C -0.130 4.130 19 C -0.093 4.093 20 H 0.072 0.928 21 C 0.163 3.837 22 N -0.755 5.755 23 C -0.242 4.242 24 H 0.089 0.911 25 C 0.003 3.997 26 N -0.935 5.935 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.209 0.791 37 H 0.208 0.792 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.029 0.971 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -8.595 -24.487 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.103 0.897 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.387 3.613 7 O -0.423 6.423 8 C -0.274 4.274 9 C -0.088 4.088 10 N -0.074 5.074 11 N -0.040 5.040 12 N -0.026 5.026 13 C -0.075 4.075 14 C -0.181 4.181 15 C -0.056 4.056 16 C -0.029 4.029 17 C -0.024 4.024 18 C -0.168 4.168 19 C -0.112 4.112 20 H 0.090 0.910 21 C 0.036 3.964 22 N -0.401 5.401 23 C -0.372 4.372 24 H 0.107 0.893 25 C -0.193 4.193 26 N -0.583 5.583 27 Si 0.715 3.285 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.247 -10.392 -24.315 27.698 hybrid contribution 0.656 0.537 -0.108 0.855 sum -7.590 -9.855 -24.422 27.408 Atomic orbital electron populations 1.21873 0.94883 1.01896 1.01663 1.21464 0.96724 0.99580 0.93947 0.89688 1.21717 0.99633 0.79757 0.99253 1.47920 1.55580 1.11645 1.17628 1.16938 0.77290 0.84337 0.82783 1.90790 1.57832 1.65095 1.28570 1.19744 0.92962 0.95701 1.19042 1.24309 1.00342 0.88495 0.95612 1.77726 0.84052 1.21976 1.23630 1.50885 1.06917 1.03701 1.42452 1.75891 0.90277 1.20264 1.16134 1.24321 0.95571 0.95144 0.92463 1.21716 1.00433 0.93969 1.02025 1.21013 0.89052 1.02408 0.93094 1.19655 0.95902 0.86373 1.00982 1.21964 1.00480 0.95607 0.84360 1.21912 1.01782 0.96063 0.97012 1.21367 1.00282 0.94646 0.94878 0.90967 1.20692 0.96257 0.94870 0.84609 1.42732 1.57545 1.37231 1.02616 1.19061 1.24139 1.12095 0.81942 0.89316 1.24678 1.00329 0.99137 0.95117 1.69701 1.48323 1.43272 0.97054 0.86553 0.81523 0.83585 0.76848 1.21093 1.21770 1.20353 0.92727 0.91780 0.93203 0.91323 0.88948 0.77496 0.77558 0.82142 0.81977 0.89611 0.90906 0.90014 0.91105 0.95570 0.95353 0.80731 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.38 37.16 0.31 -1.41 16 2 C -0.10 -1.13 2.72 -90.50 -0.25 -1.37 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.12 1.29 5.82 -3.71 -0.02 1.27 16 5 N -0.60 -6.75 2.42 -174.57 -0.42 -7.17 16 6 C 0.60 7.60 7.55 -12.86 -0.10 7.50 16 7 O -0.54 -8.28 16.54 5.18 0.09 -8.20 16 8 C -0.26 -3.07 5.17 -104.73 -0.54 -3.61 16 9 C 0.09 1.01 9.57 -17.12 -0.16 0.84 16 10 N -0.25 -3.26 12.61 30.75 0.39 -2.87 16 11 N -0.17 -2.17 5.25 32.44 0.17 -2.00 16 12 N -0.21 -2.22 11.96 30.60 0.37 -1.85 16 13 C 0.12 0.66 11.28 -17.42 -0.20 0.46 16 14 C -0.16 -0.80 10.04 -39.63 -0.40 -1.19 16 15 C -0.03 -0.23 10.09 -39.55 -0.40 -0.63 16 16 C 0.10 1.12 6.87 -84.06 -0.58 0.54 16 17 C 0.10 1.06 5.84 -3.93 -0.02 1.03 16 18 C -0.13 -1.73 4.89 -26.83 -0.13 -1.86 16 19 C -0.09 -1.29 1.96 -90.58 -0.18 -1.46 16 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.16 2.98 5.19 -4.05 -0.02 2.96 16 22 N -0.76 -17.37 5.12 -59.91 -0.31 -17.68 16 23 C -0.24 -6.80 10.47 -15.06 -0.16 -6.95 16 24 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 25 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 26 N -0.94 -29.35 13.97 55.49 0.78 -28.58 16 27 Si 0.88 21.82 27.73 -169.99 -4.71 17.11 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 31 H 0.05 0.68 5.97 -51.93 -0.31 0.37 16 32 H 0.06 0.81 6.59 -51.93 -0.34 0.46 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.06 7.03 -51.93 -0.36 0.69 16 36 H 0.21 1.54 7.59 -52.49 -0.40 1.15 16 37 H 0.21 0.15 8.06 -52.49 -0.42 -0.27 16 38 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 39 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.09 0.87 4.56 -51.93 -0.24 0.64 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.24 7.15 -51.93 -0.37 0.86 16 43 H 0.07 0.99 6.33 -51.93 -0.33 0.66 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.54 6.74 -51.93 -0.35 0.19 16 46 H 0.36 8.00 4.71 -40.82 -0.19 7.81 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -37.13 373.74 -7.25 -44.38 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.29 Total: 5.12 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.94 Total: -3.90 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: 0.97 Total: -60.15 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.13 -7.25 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184588371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.834 kcal (2) G-P(sol) polarization free energy of solvation -37.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds