Wall clock time and date at job start Wed Apr 1 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.49414 * 2 1 4 4 C 1.53195 * 109.49630 * 239.93681 * 2 1 3 5 5 N 1.46928 * 108.77507 * 294.68258 * 4 2 1 6 6 C 1.34769 * 120.62849 * 126.36880 * 5 4 2 7 7 O 1.21704 * 120.00621 * 4.28051 * 6 5 4 8 8 C 1.46680 * 119.99947 * 184.27375 * 6 5 4 9 9 C 1.40334 * 126.56062 * 310.33403 * 8 6 5 10 10 N 1.31004 * 108.77794 * 180.02562 * 9 8 6 11 11 N 1.39902 * 109.55718 * 359.97438 * 10 9 8 12 12 N 1.40014 * 132.51136 * 180.28997 * 11 10 9 13 13 C 1.30844 * 120.65683 * 180.19370 * 12 11 10 14 14 C 1.39729 * 120.97112 * 359.48909 * 13 12 11 15 15 C 1.36559 * 119.94290 * 0.25770 * 14 13 12 16 16 C 1.36749 * 107.87514 * 0.02562 * 11 10 9 17 17 C 1.46921 * 118.73789 * 306.64341 * 5 4 2 18 18 C 1.52763 * 109.01082 * 53.31143 * 17 5 4 19 19 C 1.53041 * 109.49652 * 120.09807 * 2 1 3 20 20 H 1.08999 * 109.45503 * 178.60526 * 19 2 1 21 21 C 1.52995 * 109.45981 * 298.56552 * 19 2 1 22 22 N 1.46498 * 109.46898 * 184.99994 * 21 19 2 23 23 C 1.36939 * 119.99808 * 180.02562 * 22 21 19 24 24 H 1.08006 * 120.00240 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00183 * 180.02562 * 23 22 21 26 26 N 1.31623 * 120.00437 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 119.99697 * 359.97438 * 25 23 22 28 28 H 1.48502 * 109.47381 * 90.00324 * 27 25 23 29 29 H 1.48501 * 109.47124 * 210.00316 * 27 25 23 30 30 H 1.48504 * 109.47598 * 330.00246 * 27 25 23 31 31 H 1.09007 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47266 * 300.06425 * 1 2 3 33 33 H 1.09000 * 109.47328 * 60.06219 * 1 2 3 34 34 H 1.08997 * 109.57977 * 174.89423 * 4 2 1 35 35 H 1.09003 * 109.69969 * 54.54038 * 4 2 1 36 36 H 1.07999 * 125.60700 * 0.03973 * 9 8 6 37 37 H 1.07994 * 119.51259 * 179.72633 * 13 12 11 38 38 H 1.07998 * 120.03032 * 180.23921 * 14 13 12 39 39 H 1.08001 * 120.44613 * 180.02562 * 15 14 13 40 40 H 1.09004 * 109.58695 * 173.14374 * 17 5 4 41 41 H 1.09000 * 109.58706 * 293.57101 * 17 5 4 42 42 H 1.08997 * 109.56673 * 185.55203 * 18 17 5 43 43 H 1.09002 * 109.38375 * 65.51332 * 18 17 5 44 44 H 1.09003 * 109.47234 * 305.00148 * 21 19 2 45 45 H 1.09004 * 109.47251 * 65.00067 * 21 19 2 46 46 H 0.96999 * 120.00524 * 0.02562 * 22 21 19 47 47 H 0.96997 * 120.00255 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6516 -2.1378 -1.1702 6 6 0.9740 -2.7211 -2.1787 7 8 0.7472 -2.0987 -3.1997 8 6 0.5100 -4.1062 -2.0459 9 6 1.2758 -5.2088 -1.6369 10 7 0.5157 -6.2757 -1.6428 11 7 -0.7762 -5.9281 -2.0521 12 7 -1.9481 -6.6752 -2.2217 13 6 -3.0519 -6.1019 -2.6279 14 6 -3.0945 -4.7307 -2.8929 15 6 -1.9714 -3.9704 -2.7334 16 6 -0.7891 -4.5842 -2.3046 17 6 2.0091 -2.9025 0.0322 18 6 1.5030 -2.1562 1.2653 19 6 2.0408 -0.7235 1.2481 20 1 3.1305 -0.7448 1.2350 21 6 1.5607 0.0163 2.4984 22 7 2.1468 -0.6051 3.6886 23 6 1.8578 -0.1098 4.9321 24 1 1.1975 0.7386 5.0355 25 6 2.4135 -0.6982 6.0599 26 7 2.1353 -0.2225 7.2553 27 14 3.5549 -2.1660 5.8812 28 1 4.9550 -1.6906 5.7441 29 1 3.4412 -3.0307 7.0832 30 1 3.1759 -2.9439 4.6743 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3634 0.5129 -0.8905 34 1 3.1275 -0.6458 -1.2982 35 1 1.6027 -0.2730 -2.1403 36 1 2.3199 -5.1820 -1.3622 37 1 -3.9441 -6.6967 -2.7567 38 1 -4.0148 -4.2725 -3.2239 39 1 -1.9953 -2.9097 -2.9356 40 1 1.5473 -3.8889 -0.0112 41 1 3.0926 -3.0063 0.0905 42 1 1.8481 -2.6635 2.1662 43 1 0.4133 -2.1359 1.2540 44 1 1.8696 1.0602 2.4440 45 1 0.4737 -0.0383 2.5579 46 1 2.7395 -1.3673 3.5959 47 1 2.5239 -0.6334 8.0433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184588371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:30 Heat of formation + Delta-G solvation = 100.373264 kcal Electronic energy + Delta-G solvation = -30336.994934 eV Core-core repulsion = 26329.416374 eV Total energy + Delta-G solvation = -4007.578561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03639 -41.28494 -39.29731 -38.81771 -36.67096 -34.88124 -34.31452 -33.45460 -32.33226 -32.20896 -30.77267 -28.75216 -27.80469 -25.87024 -25.42887 -24.61004 -24.22983 -23.33361 -22.58743 -21.01092 -20.00317 -19.42515 -18.99826 -18.34303 -17.88319 -17.31318 -16.97826 -16.77317 -16.51539 -16.27600 -15.98159 -15.57875 -15.30458 -15.17693 -14.87829 -14.73986 -14.65271 -14.36212 -14.02054 -13.81833 -13.64740 -13.55308 -13.48839 -13.25759 -12.86315 -12.71261 -12.55299 -12.44007 -12.16488 -12.04131 -11.98520 -11.85029 -11.55281 -11.54766 -11.40207 -11.27084 -10.98812 -10.93917 -10.72745 -9.67068 -9.26416 -9.24663 -8.01930 -5.34885 -0.80352 -0.05867 0.30718 1.02783 1.37930 1.42598 1.49804 1.68867 1.97588 2.21325 2.49586 3.09877 3.27350 3.29715 3.42136 3.55282 3.56729 3.68144 3.76916 3.88555 3.97680 4.05116 4.13073 4.19556 4.27862 4.30329 4.40840 4.46018 4.66434 4.72811 4.74393 4.79798 4.83984 4.86164 4.87301 4.99246 5.05493 5.07055 5.13840 5.15844 5.20044 5.25098 5.32164 5.52266 5.63121 5.77053 6.14059 6.22274 6.32775 6.36282 7.09877 7.10732 7.86346 8.06273 9.19981 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.002968 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.065672 B = 9431.683950 C =10239.295618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.121 3.879 5 N -0.592 5.592 6 C 0.605 3.395 7 O -0.576 6.576 8 C -0.288 4.288 9 C 0.100 3.900 10 N -0.291 5.291 11 N -0.190 5.190 12 N -0.258 5.258 13 C 0.133 3.867 14 C -0.121 4.121 15 C -0.064 4.064 16 C 0.091 3.909 17 C 0.105 3.895 18 C -0.126 4.126 19 C -0.082 4.082 20 H 0.082 0.918 21 C 0.161 3.839 22 N -0.755 5.755 23 C -0.233 4.233 24 H 0.052 0.948 25 C -0.067 4.067 26 N -0.987 5.987 27 Si 0.955 3.045 28 H -0.276 1.276 29 H -0.299 1.299 30 H -0.245 1.245 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.260 0.740 38 H 0.209 0.791 39 H 0.167 0.833 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.367 0.633 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -9.962 -26.904 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.114 0.886 4 C 0.000 4.000 5 N -0.323 5.323 6 C 0.393 3.607 7 O -0.457 6.457 8 C -0.304 4.304 9 C -0.079 4.079 10 N -0.116 5.116 11 N -0.055 5.055 12 N -0.071 5.071 13 C -0.059 4.059 14 C -0.145 4.145 15 C -0.092 4.092 16 C -0.036 4.036 17 C -0.017 4.017 18 C -0.164 4.164 19 C -0.101 4.101 20 H 0.100 0.900 21 C 0.035 3.965 22 N -0.401 5.401 23 C -0.364 4.364 24 H 0.070 0.930 25 C -0.258 4.258 26 N -0.638 5.638 27 Si 0.782 3.218 28 H -0.202 1.202 29 H -0.226 1.226 30 H -0.169 1.169 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.275 0.725 38 H 0.226 0.774 39 H 0.184 0.816 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.201 0.799 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.663 -11.766 -26.777 30.504 hybrid contribution 0.493 1.043 0.588 1.295 sum -8.170 -10.723 -26.189 29.455 Atomic orbital electron populations 1.21820 0.95256 1.01301 1.01524 1.21417 0.96321 1.00067 0.93165 0.88558 1.21732 1.00657 0.79318 0.98332 1.47927 1.55107 1.11827 1.17411 1.16997 0.76737 0.84478 0.82447 1.90762 1.59118 1.65970 1.29801 1.19753 0.93761 0.95522 1.21412 1.24696 1.01154 0.87653 0.94446 1.77586 0.85056 1.23409 1.25555 1.51023 1.07333 1.04158 1.42987 1.75916 0.90916 1.21582 1.18653 1.25350 0.95443 0.96016 0.89094 1.22320 1.00855 0.93403 0.97964 1.21276 0.89324 1.03176 0.95402 1.20123 0.96878 0.86396 1.00214 1.21962 1.01771 0.95273 0.82699 1.21836 1.01088 0.95794 0.97728 1.21265 1.00774 0.94639 0.93407 0.89953 1.20840 0.95595 0.95049 0.85023 1.42710 1.57771 1.37491 1.02162 1.19034 1.22526 1.10677 0.84200 0.92981 1.25549 1.02800 1.02870 0.94586 1.69897 1.50377 1.45439 0.98082 0.85406 0.79127 0.79598 0.77659 1.20244 1.22570 1.16942 0.93555 0.93060 0.92142 0.89469 0.89300 0.74982 0.72453 0.77360 0.81568 0.89009 0.88579 0.91499 0.92299 0.95971 0.96192 0.79920 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.38 71.98 0.60 -2.63 16 2 C -0.09 -1.92 2.72 -10.71 -0.03 -1.95 16 3 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.12 2.38 5.82 86.36 0.50 2.88 16 5 N -0.59 -12.41 2.42 -824.43 -1.99 -14.40 16 6 C 0.60 14.87 7.55 86.45 0.65 15.52 16 7 O -0.58 -17.26 16.54 -4.36 -0.07 -17.33 16 8 C -0.29 -6.78 5.17 -19.93 -0.10 -6.88 16 9 C 0.10 2.15 9.57 85.33 0.82 2.96 16 10 N -0.29 -7.68 12.61 -56.63 -0.71 -8.39 16 11 N -0.19 -4.72 5.25 -51.29 -0.27 -4.99 16 12 N -0.26 -5.03 11.96 -57.12 -0.68 -5.71 16 13 C 0.13 1.03 11.28 85.20 0.96 1.99 16 14 C -0.12 -0.79 10.04 22.24 0.22 -0.57 16 15 C -0.06 -0.98 10.09 22.29 0.23 -0.76 16 16 C 0.09 2.07 6.87 39.42 0.27 2.34 16 17 C 0.11 2.04 5.84 86.22 0.50 2.54 16 18 C -0.13 -3.17 4.89 30.53 0.15 -3.02 16 19 C -0.08 -2.13 1.96 -10.77 -0.02 -2.15 16 20 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 21 C 0.16 5.81 5.19 86.38 0.45 6.26 16 22 N -0.76 -34.25 5.12 -343.45 -1.76 -36.01 16 23 C -0.23 -13.30 10.47 84.03 0.88 -12.42 16 24 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 25 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 26 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 27 Si 0.96 44.77 27.73 68.60 1.90 46.68 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.25 -10.07 6.52 99.48 0.65 -9.42 16 31 H 0.05 1.13 5.97 -2.38 -0.01 1.11 16 32 H 0.05 1.28 6.59 -2.39 -0.02 1.27 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.88 7.03 -2.39 -0.02 1.86 16 36 H 0.23 3.18 7.59 -2.91 -0.02 3.16 16 37 H 0.26 -0.99 8.06 -2.91 -0.02 -1.02 16 38 H 0.21 -0.69 8.06 -2.91 -0.02 -0.71 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 40 H 0.09 1.73 4.56 -2.38 -0.01 1.72 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.90 7.15 -2.39 -0.02 1.88 16 43 H 0.06 1.61 6.33 -2.39 -0.02 1.60 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.02 0.77 6.74 -2.38 -0.02 0.75 16 46 H 0.37 15.58 4.71 -92.71 -0.44 15.14 16 47 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -85.50 373.74 3.78 -81.72 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.52 Total: 21.17 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 6.55 Total: 0.65 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.11 Total: -132.87 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.07 Total: -17.33 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.68 kcal Total: -85.50 3.78 -81.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184588371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.089 kcal (2) G-P(sol) polarization free energy of solvation -85.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds