Wall clock time and date at job start Wed Apr 1 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47009 * 2 1 4 4 N 1.46501 * 109.46598 * 119.99471 * 2 1 3 5 5 C 1.36939 * 120.00401 * 274.99803 * 4 2 1 6 6 H 1.07996 * 119.99509 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99791 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99420 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00329 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47158 * 90.00386 * 9 7 5 11 11 H 1.48500 * 109.46851 * 210.00129 * 9 7 5 12 12 H 1.48506 * 109.46868 * 330.00216 * 9 7 5 13 13 C 1.52995 * 109.46909 * 239.99381 * 2 1 3 14 14 C 1.53043 * 109.45917 * 60.00453 * 13 2 1 15 15 C 1.53186 * 109.31233 * 181.37956 * 14 13 2 16 16 N 1.46925 * 108.77878 * 305.36682 * 15 14 13 17 17 C 1.34781 * 120.63066 * 233.58383 * 16 15 14 18 18 O 1.21593 * 119.99950 * 183.88354 * 17 16 15 19 19 C 1.47535 * 119.99689 * 3.88457 * 17 16 15 20 20 C 1.39404 * 120.75742 * 306.93876 * 19 17 16 21 21 N 1.31914 * 121.02006 * 179.97438 * 20 19 17 22 22 C 1.31791 * 122.59939 * 359.97438 * 21 20 19 23 23 C 1.39436 * 120.63370 * 0.02562 * 22 21 20 24 24 N 1.35706 * 134.43637 * 180.02562 * 23 22 21 25 25 C 1.30132 * 109.50600 * 179.97438 * 24 23 22 26 26 N 1.36265 * 110.05493 * 359.97438 * 25 24 23 27 27 H 0.96991 * 126.29190 * 180.02562 * 26 25 24 28 28 C 1.36920 * 107.40757 * 0.02562 * 26 25 24 29 29 C 1.46925 * 118.73835 * 53.85617 * 16 15 14 30 30 C 1.53041 * 109.45760 * 180.02562 * 13 2 1 31 31 H 1.09001 * 109.46484 * 60.00074 * 1 2 3 32 32 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47001 * 300.00401 * 1 2 3 34 34 H 0.97002 * 119.99767 * 95.00599 * 4 2 1 35 35 H 0.96999 * 119.99985 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.45319 * 300.03454 * 13 2 1 37 37 H 1.08999 * 109.49727 * 61.42912 * 14 13 2 38 38 H 1.09000 * 109.49994 * 301.33404 * 14 13 2 39 39 H 1.08998 * 109.58641 * 185.57705 * 15 14 13 40 40 H 1.09005 * 109.70622 * 65.22128 * 15 14 13 41 41 H 1.08002 * 119.48786 * 0.02562 * 20 19 17 42 42 H 1.08000 * 119.68840 * 179.97438 * 22 21 20 43 43 H 1.07996 * 124.96963 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58676 * 65.93140 * 29 16 15 45 45 H 1.09006 * 109.58805 * 186.35223 * 29 16 15 46 46 H 1.09003 * 109.49966 * 298.56840 * 30 13 2 47 47 H 1.09005 * 109.49753 * 58.63314 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0074 2.3759 6 1 1.8927 1.0406 2.4241 7 6 2.6122 -0.6616 3.5091 8 7 2.7374 -0.0050 4.6430 9 14 3.0563 -2.4741 3.4254 10 1 4.4888 -2.6164 3.0611 11 1 2.8172 -3.1040 4.7488 12 1 2.2159 -3.1428 2.3997 13 6 2.0400 -0.7214 -1.2491 14 6 1.5298 0.0002 -2.4986 15 6 2.0136 -0.7445 -3.7468 16 7 3.4753 -0.8774 -3.6814 17 6 4.2493 -0.4589 -4.7023 18 8 5.4514 -0.6383 -4.6672 19 6 3.6379 0.2170 -5.8625 20 6 2.5792 -0.3705 -6.5534 21 7 2.0283 0.2293 -7.5911 22 6 2.4366 1.4021 -8.0325 23 6 3.4895 2.0692 -7.4075 24 7 4.1222 3.2515 -7.6157 25 6 5.0609 3.4044 -6.7274 26 7 5.0914 2.3297 -5.8903 27 1 5.6980 2.1999 -5.1446 28 6 4.1085 1.4668 -6.2953 29 6 4.0770 -1.4807 -2.4844 30 6 3.5704 -0.7218 -1.2486 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6317 1.1528 35 1 3.0606 -0.4623 5.4351 36 1 1.6760 -1.7488 -1.2490 37 1 1.9137 1.0203 -2.5119 38 1 0.4401 0.0214 -2.4871 39 1 1.7374 -0.1814 -4.6382 40 1 1.5581 -1.7341 -3.7840 41 1 2.2036 -1.3313 -6.2336 42 1 1.9517 1.8504 -8.8870 43 1 5.7192 4.2581 -6.6632 44 1 3.7861 -2.5291 -2.4182 45 1 5.1627 -1.4036 -2.5427 46 1 3.9346 0.3053 -1.2740 47 1 3.9338 -1.2143 -0.3466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267487833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:56 Heat of formation + Delta-G solvation = 39.769824 kcal Electronic energy + Delta-G solvation = -30196.087910 eV Core-core repulsion = 26185.881388 eV Total energy + Delta-G solvation = -4010.206523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.54286 -41.42876 -39.58992 -39.16535 -37.04963 -34.77225 -34.43258 -33.04731 -32.57039 -31.85827 -30.92965 -30.31030 -27.11351 -25.78485 -25.14969 -24.39606 -23.87340 -23.29102 -22.21329 -21.39160 -20.58559 -19.64196 -19.48405 -18.85725 -18.21628 -17.26430 -16.88015 -16.68770 -16.48244 -16.17486 -15.93763 -15.92822 -15.28257 -15.17048 -14.95900 -14.84747 -14.66719 -14.43593 -14.23002 -14.13691 -13.74478 -13.66174 -13.42711 -13.09408 -12.94714 -12.82754 -12.36866 -12.26447 -12.09483 -12.04341 -11.84670 -11.72501 -11.53172 -11.44505 -11.33705 -11.24632 -10.94579 -10.63441 -10.24275 -9.79664 -9.45998 -9.27839 -8.01040 -5.32933 -0.63219 0.20902 1.28476 1.37206 1.40920 1.48282 1.61661 1.77265 1.87363 2.49292 2.66918 3.01390 3.14892 3.31114 3.43510 3.52952 3.57107 3.74889 3.81930 3.83209 4.01930 4.09541 4.13052 4.17888 4.31350 4.37967 4.51838 4.55425 4.57426 4.70969 4.76308 4.79432 4.84473 4.86348 4.94784 5.04911 5.08812 5.10381 5.18785 5.25767 5.31932 5.43768 5.51684 5.63767 5.79714 6.11747 6.21486 6.23726 6.52314 6.80733 6.88877 7.10898 7.88235 8.07074 9.21154 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.002616 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.305281 B =10701.651510 C =10815.009635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.031 0.969 4 N -0.748 5.748 5 C -0.220 4.220 6 H 0.051 0.949 7 C -0.068 4.068 8 N -0.989 5.989 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.301 1.301 12 H -0.247 1.247 13 C -0.083 4.083 14 C -0.120 4.120 15 C 0.098 3.902 16 N -0.592 5.592 17 C 0.565 3.435 18 O -0.578 6.578 19 C -0.180 4.180 20 C 0.138 3.862 21 N -0.492 5.492 22 C 0.191 3.809 23 C -0.026 4.026 24 N -0.506 5.506 25 C 0.285 3.715 26 N -0.587 5.587 27 H 0.437 0.563 28 C 0.099 3.901 29 C 0.117 3.883 30 C -0.118 4.118 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.024 0.976 34 H 0.365 0.635 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.191 0.809 42 H 0.193 0.807 43 H 0.270 0.730 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.079 1.016 -28.406 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 H 0.049 0.951 4 N -0.392 5.392 5 C -0.352 4.352 6 H 0.069 0.931 7 C -0.259 4.259 8 N -0.640 5.640 9 Si 0.781 3.219 10 H -0.206 1.206 11 H -0.228 1.228 12 H -0.171 1.171 13 C -0.102 4.102 14 C -0.159 4.159 15 C -0.023 4.023 16 N -0.323 5.323 17 C 0.353 3.647 18 O -0.459 6.459 19 C -0.189 4.189 20 C -0.014 4.014 21 N -0.202 5.202 22 C 0.026 3.974 23 C -0.146 4.146 24 N -0.226 5.226 25 C -0.002 4.002 26 N -0.198 5.198 27 H 0.278 0.722 28 C -0.022 4.022 29 C -0.005 4.005 30 C -0.156 4.156 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.199 0.801 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.208 0.792 42 H 0.209 0.791 43 H 0.286 0.714 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.411 1.196 -29.308 29.335 hybrid contribution 1.834 -0.801 2.566 3.254 sum 1.424 0.395 -26.742 26.783 Atomic orbital electron populations 1.22341 0.97278 1.01507 1.00663 1.20426 0.92896 0.94661 0.85172 0.95107 1.42767 1.80028 1.09448 1.06909 1.18979 1.34473 0.94119 0.87599 0.93107 1.25491 1.02700 1.02541 0.95177 1.69894 1.55110 1.37771 1.01245 0.85435 0.78632 0.80863 0.77015 1.20553 1.22845 1.17094 1.21336 0.94383 1.00586 0.93940 1.21951 1.02573 0.98737 0.92631 1.22276 0.77611 1.03000 0.99425 1.48157 1.08337 1.59113 1.16663 1.18262 0.85875 0.77963 0.82592 1.90781 1.15919 1.58599 1.80551 1.19777 1.02673 0.95190 1.01263 1.23107 0.89049 0.99551 0.89660 1.67814 1.29217 1.09646 1.13525 1.22719 0.89254 0.88429 0.96966 1.20423 1.01777 0.94784 0.97656 1.70516 1.09842 1.16546 1.25723 1.26629 0.96615 0.91942 0.85033 1.43275 1.29387 1.17153 1.29957 0.72219 1.18912 0.92921 0.92974 0.97427 1.21755 0.98743 0.97375 0.82646 1.21872 0.96390 1.00199 0.97141 0.90349 0.92647 0.95706 0.80138 0.93559 0.89665 0.92724 0.87928 0.88282 0.87792 0.79245 0.79051 0.71444 0.89136 0.90486 0.93447 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 9.14 71.98 0.66 -4.13 16 2 C 0.18 5.97 2.47 44.99 0.11 6.08 16 3 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 4 N -0.75 -32.59 4.21 -322.93 -1.36 -33.95 16 5 C -0.22 -12.24 10.41 84.03 0.87 -11.36 16 6 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 8 N -0.99 -63.40 13.97 21.65 0.30 -63.09 16 9 Si 0.95 44.59 27.74 68.60 1.90 46.49 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 12 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 13 C -0.08 -2.03 1.79 -10.77 -0.02 -2.05 16 14 C -0.12 -2.18 5.04 30.67 0.15 -2.02 16 15 C 0.10 1.43 5.49 86.36 0.47 1.90 16 16 N -0.59 -11.85 2.97 -821.82 -2.44 -14.29 16 17 C 0.56 13.21 7.24 86.69 0.63 13.84 16 18 O -0.58 -17.49 16.51 -4.01 -0.07 -17.55 16 19 C -0.18 -3.63 4.92 -20.02 -0.10 -3.73 16 20 C 0.14 2.27 8.59 84.96 0.73 3.00 16 21 N -0.49 -8.53 10.30 -193.93 -2.00 -10.53 16 22 C 0.19 3.21 11.25 84.99 0.96 4.16 16 23 C -0.03 -0.51 7.27 39.46 0.29 -0.22 16 24 N -0.51 -9.20 11.28 -191.89 -2.16 -11.36 16 25 C 0.28 3.39 12.98 179.98 2.34 5.73 16 26 N -0.59 -9.16 6.19 -190.31 -1.18 -10.34 16 27 H 0.44 5.92 8.96 -92.71 -0.83 5.09 16 28 C 0.10 2.01 7.11 39.50 0.28 2.29 16 29 C 0.12 2.62 6.45 86.51 0.56 3.18 16 30 C -0.12 -3.15 5.24 30.82 0.16 -2.99 16 31 H 0.08 1.79 6.40 -2.39 -0.02 1.77 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.37 15.16 5.44 -92.71 -0.50 14.66 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.51 6.36 -2.39 -0.02 1.49 16 39 H 0.10 1.28 4.69 -2.39 -0.01 1.26 16 40 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.19 2.11 7.28 -2.91 -0.02 2.08 16 42 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 43 H 0.27 0.21 8.06 -2.91 -0.02 0.19 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 1.98 7.02 -2.38 -0.02 1.96 16 46 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.07 2.04 7.41 -2.38 -0.02 2.03 16 Total: -1.00 -79.67 375.91 1.19 -78.48 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.37 Total: 25.99 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 8.56 Total: 10.16 kcal Atomic # 7 Polarization: -134.73 SS G_CDS: -8.83 Total: -143.56 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.07 Total: -17.55 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -79.67 1.19 -78.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267487833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.250 kcal (2) G-P(sol) polarization free energy of solvation -79.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds