Wall clock time and date at job start Wed Apr 1 2020 02:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46495 * 109.47540 * 239.99876 * 2 1 3 5 5 C 1.36944 * 119.99927 * 85.00130 * 4 2 1 6 6 H 1.07996 * 119.99681 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99509 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00669 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99469 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47047 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46802 * 119.99530 * 9 7 5 12 12 H 1.48498 * 109.47122 * 239.99616 * 9 7 5 13 13 C 1.53001 * 109.46997 * 119.99966 * 2 1 3 14 14 C 1.53029 * 109.46145 * 60.02976 * 13 2 1 15 15 C 1.53194 * 109.31613 * 178.60314 * 14 13 2 16 16 N 1.46934 * 108.76610 * 54.65201 * 15 14 13 17 17 C 1.34774 * 120.63007 * 126.40874 * 16 15 14 18 18 O 1.21588 * 120.00051 * 354.68033 * 17 16 15 19 19 C 1.47526 * 119.99988 * 174.68769 * 17 16 15 20 20 C 1.39416 * 120.75415 * 322.16450 * 19 17 16 21 21 N 1.31918 * 121.01582 * 180.02562 * 20 19 17 22 22 C 1.31789 * 122.59927 * 359.97426 * 21 20 19 23 23 C 1.39438 * 120.63900 * 0.02562 * 22 21 20 24 24 N 1.35703 * 134.43452 * 180.02562 * 23 22 21 25 25 C 1.30139 * 109.49412 * 179.23813 * 24 23 22 26 26 N 1.36261 * 110.05953 * 0.67120 * 25 24 23 27 27 H 0.97002 * 126.29742 * 179.43087 * 26 25 24 28 28 C 1.36923 * 107.40190 * 359.43321 * 26 25 24 29 29 C 1.46928 * 118.73844 * 306.39200 * 16 15 14 30 30 C 1.53051 * 109.45859 * 299.97244 * 13 2 1 31 31 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46722 * 60.00508 * 1 2 3 33 33 H 1.09000 * 109.47557 * 300.00005 * 1 2 3 34 34 H 0.97001 * 120.00213 * 265.00239 * 4 2 1 35 35 H 0.96998 * 120.00259 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46288 * 180.02562 * 13 2 1 37 37 H 1.09005 * 109.50065 * 298.56534 * 14 13 2 38 38 H 1.08993 * 109.49834 * 58.66279 * 14 13 2 39 39 H 1.09000 * 109.59564 * 294.86892 * 15 14 13 40 40 H 1.08998 * 109.70719 * 174.50714 * 15 14 13 41 41 H 1.07991 * 119.49123 * 0.02562 * 20 19 17 42 42 H 1.08003 * 119.68080 * 180.02562 * 22 21 20 43 43 H 1.08003 * 124.96584 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.58217 * 293.81937 * 29 16 15 45 45 H 1.08997 * 109.70385 * 173.46378 * 29 16 15 46 46 H 1.08999 * 109.49696 * 301.33808 * 30 13 2 47 47 H 1.08997 * 109.49205 * 61.40459 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1493 -0.0074 -2.3757 6 1 1.8928 1.0405 -2.4241 7 6 2.6116 -0.6620 -3.5091 8 7 2.9246 -1.9390 -3.4501 9 14 2.7894 0.2698 -5.1185 10 1 2.3745 1.6819 -4.9213 11 1 4.2062 0.2269 -5.5613 12 1 1.9284 -0.3590 -6.1522 13 6 2.0400 -0.7213 1.2493 14 6 1.5304 -2.1642 1.2487 15 6 2.0714 -2.8932 2.4826 16 7 1.7085 -2.1258 3.6819 17 6 1.0558 -2.7155 4.7031 18 8 0.6763 -3.8659 4.5985 19 6 0.8017 -1.9652 5.9476 20 6 1.7542 -1.0826 6.4550 21 7 1.5326 -0.4094 7.5676 22 6 0.4160 -0.5261 8.2577 23 6 -0.5968 -1.3842 7.8308 24 7 -1.8244 -1.7152 8.3051 25 6 -2.3837 -2.5728 7.5019 26 7 -1.5450 -2.8596 6.4670 27 1 -1.7218 -3.4747 5.7380 28 6 -0.4067 -2.1199 6.6453 29 6 2.0710 -0.7034 3.7470 30 6 1.5302 0.0009 2.4987 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 0.5138 0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 3.2480 -2.3963 -4.2420 36 1 3.1300 -0.7208 1.2494 37 1 0.4406 -2.1652 1.2740 38 1 1.8742 -2.6711 0.3471 39 1 3.1563 -2.9724 2.4140 40 1 1.6352 -3.8904 2.5410 41 1 2.6878 -0.9479 5.9291 42 1 0.2840 0.0483 9.1627 43 1 -3.3645 -3.0029 7.6412 44 1 3.1559 -0.6041 3.7814 45 1 1.6344 -0.2533 4.6385 46 1 1.8740 1.0352 2.4868 47 1 0.4405 -0.0202 2.5118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267487834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:59 Heat of formation + Delta-G solvation = 42.594369 kcal Electronic energy + Delta-G solvation = -30102.250945 eV Core-core repulsion = 26092.166904 eV Total energy + Delta-G solvation = -4010.084041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53809 -41.46646 -39.60105 -39.18658 -36.93614 -34.79677 -34.40444 -32.90137 -32.30589 -31.82062 -30.84922 -29.86584 -27.06277 -25.99112 -25.37221 -24.52734 -24.00385 -23.31567 -22.60587 -21.08562 -19.96138 -19.45511 -19.31143 -18.79483 -18.12928 -17.20459 -16.83397 -16.66629 -16.42874 -16.21390 -15.95969 -15.82955 -15.45630 -15.28407 -15.12961 -14.89674 -14.48882 -14.30918 -14.17668 -14.04855 -13.77124 -13.54839 -13.07881 -12.96671 -12.87192 -12.81099 -12.64969 -12.10743 -12.09624 -11.99551 -11.77514 -11.70373 -11.60193 -11.42994 -11.22698 -11.08265 -10.89278 -10.61974 -10.24887 -9.78601 -9.44870 -8.97036 -7.92661 -5.19244 -0.68321 0.21286 1.32173 1.46820 1.47293 1.56765 1.68938 1.81278 1.89159 2.56921 2.68625 3.02430 3.14962 3.41141 3.43344 3.57123 3.73529 3.82382 3.84560 3.88901 4.02839 4.10177 4.18761 4.22990 4.32328 4.37347 4.50970 4.56252 4.61859 4.69763 4.76640 4.80461 4.85526 4.90094 4.99364 5.05297 5.09168 5.11980 5.20696 5.31218 5.32758 5.40461 5.50469 5.57576 5.69698 6.14436 6.25124 6.31114 6.53224 6.80658 6.90864 7.37226 8.16401 8.38045 9.31126 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002317 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.806640 B =12082.979010 C =12219.920165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.045 0.955 4 N -0.736 5.736 5 C -0.232 4.232 6 H 0.073 0.927 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.298 1.298 13 C -0.080 4.080 14 C -0.117 4.117 15 C 0.119 3.881 16 N -0.592 5.592 17 C 0.565 3.435 18 O -0.580 6.580 19 C -0.186 4.186 20 C 0.139 3.861 21 N -0.495 5.495 22 C 0.196 3.804 23 C -0.029 4.029 24 N -0.506 5.506 25 C 0.284 3.716 26 N -0.584 5.584 27 H 0.438 0.562 28 C 0.104 3.896 29 C 0.094 3.906 30 C -0.121 4.121 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.192 0.808 42 H 0.194 0.806 43 H 0.271 0.729 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 1.704 25.795 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.063 0.937 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.091 0.909 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.796 3.204 10 H -0.191 1.191 11 H -0.222 1.222 12 H -0.225 1.225 13 C -0.100 4.100 14 C -0.155 4.155 15 C -0.003 4.003 16 N -0.322 5.322 17 C 0.354 3.646 18 O -0.461 6.461 19 C -0.195 4.195 20 C -0.013 4.013 21 N -0.205 5.205 22 C 0.031 3.969 23 C -0.149 4.149 24 N -0.226 5.226 25 C -0.003 4.003 26 N -0.195 5.195 27 H 0.280 0.720 28 C -0.018 4.018 29 C -0.028 4.028 30 C -0.160 4.160 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.208 0.792 42 H 0.211 0.789 43 H 0.287 0.713 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.115 0.885 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.466 2.196 26.632 27.746 hybrid contribution -0.286 -1.562 -2.991 3.386 sum -7.752 0.634 23.641 24.888 Atomic orbital electron populations 1.22386 0.98570 1.00415 1.00229 1.20443 0.92289 0.95038 0.85895 0.93724 1.42725 1.78285 1.10503 1.06252 1.19644 1.34172 0.94061 0.88501 0.90899 1.25469 1.03432 0.96855 1.01211 1.69803 1.53034 1.10124 1.29179 0.85168 0.76706 0.78230 0.80267 1.19140 1.22181 1.22509 1.21269 1.00145 0.94254 0.94287 1.21811 1.00549 0.96302 0.96888 1.21601 1.00568 0.95289 0.82863 1.48066 1.55780 1.11836 1.16555 1.18235 0.77306 0.85761 0.83316 1.90744 1.53610 1.19067 1.82707 1.19810 0.95595 1.05510 0.98590 1.23285 0.98224 0.88403 0.91385 1.67843 1.21162 1.24086 1.07403 1.22761 0.84903 0.91286 0.97985 1.20429 0.96427 1.03087 0.94999 1.70519 1.06309 1.16754 1.28985 1.26652 0.98170 0.93460 0.82030 1.43299 1.13136 1.37324 1.25703 0.72040 1.18924 0.89566 0.95806 0.97482 1.22429 1.02146 0.78502 0.99683 1.21967 1.01209 1.00265 0.92516 0.94230 0.95250 0.91212 0.79278 0.94228 0.91217 0.92341 0.92347 0.89905 0.90298 0.79180 0.78928 0.71338 0.88240 0.87700 0.88484 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.29 8.79 71.98 0.63 -4.66 16 2 C 0.17 6.22 2.72 44.99 0.12 6.34 16 3 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 4 N -0.74 -35.49 5.04 -322.94 -1.63 -37.12 16 5 C -0.23 -12.57 9.93 84.03 0.83 -11.73 16 6 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 7 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 8 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 9 Si 0.97 45.90 29.55 68.60 2.03 47.93 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 13 C -0.08 -2.25 2.14 -10.77 -0.02 -2.27 16 14 C -0.12 -3.44 4.81 30.67 0.15 -3.29 16 15 C 0.12 3.00 6.44 86.36 0.56 3.56 16 16 N -0.59 -12.96 2.97 -822.66 -2.45 -15.41 16 17 C 0.56 13.87 7.37 86.69 0.64 14.51 16 18 O -0.58 -17.77 16.19 -3.99 -0.06 -17.83 16 19 C -0.19 -3.90 5.23 -20.02 -0.10 -4.01 16 20 C 0.14 2.41 8.55 84.96 0.73 3.14 16 21 N -0.50 -8.88 10.30 -193.92 -2.00 -10.88 16 22 C 0.20 3.32 11.25 84.99 0.96 4.27 16 23 C -0.03 -0.57 7.27 39.46 0.29 -0.28 16 24 N -0.51 -9.05 11.28 -191.89 -2.17 -11.21 16 25 C 0.28 3.27 12.97 179.97 2.34 5.61 16 26 N -0.58 -9.14 6.19 -190.31 -1.18 -10.31 16 27 H 0.44 6.09 8.81 -92.71 -0.82 5.27 16 28 C 0.10 2.14 6.98 39.50 0.28 2.42 16 29 C 0.09 1.55 4.84 86.36 0.42 1.97 16 30 C -0.12 -2.44 4.97 30.67 0.15 -2.28 16 31 H 0.04 1.39 6.46 -2.39 -0.02 1.37 16 32 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.07 1.88 6.46 -2.39 -0.02 1.87 16 34 H 0.37 19.32 6.04 -92.71 -0.56 18.76 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.79 6.51 -2.38 -0.02 1.78 16 38 H 0.06 2.06 6.46 -2.39 -0.02 2.05 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 2.21 6.99 -2.39 -0.02 2.19 16 41 H 0.19 2.42 6.30 -2.92 -0.02 2.40 16 42 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.27 0.03 8.06 -2.91 -0.02 0.01 16 44 H 0.10 1.28 8.10 -2.38 -0.02 1.26 16 45 H 0.11 1.49 4.57 -2.39 -0.01 1.47 16 46 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 1.40 6.51 -2.39 -0.02 1.38 16 Total: -1.00 -75.02 371.79 0.92 -74.10 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.34 Total: 29.87 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 8.42 Total: 9.35 kcal Atomic # 7 Polarization: -134.29 SS G_CDS: -9.13 Total: -143.42 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.06 Total: -17.83 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -75.02 0.92 -74.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267487834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.694 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds