Wall clock time and date at job start Wed Apr 1 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45479 * 2 1 4 4 C 1.53043 * 109.45844 * 240.03036 * 2 1 3 5 5 C 1.53190 * 109.31252 * 178.61403 * 4 2 1 6 6 N 1.46929 * 108.77556 * 54.63139 * 5 4 2 7 7 C 1.34777 * 120.63029 * 126.37520 * 6 5 4 8 8 O 1.21588 * 120.00072 * 186.92182 * 7 6 5 9 9 C 1.47579 * 119.99682 * 6.91470 * 7 6 5 10 10 C 1.36488 * 125.91883 * 187.08816 * 9 7 6 11 11 N 1.36190 * 107.01417 * 179.78943 * 10 9 7 12 12 C 1.36667 * 132.44232 * 179.56529 * 11 10 9 13 13 C 1.35477 * 119.10228 * 180.39592 * 12 11 10 14 14 C 1.40303 * 119.35753 * 0.25621 * 13 12 11 15 15 N 1.31138 * 120.41224 * 359.97438 * 14 13 12 16 16 C 1.34285 * 120.94687 * 0.02562 * 15 14 13 17 17 N 1.32209 * 131.66038 * 179.97438 * 16 15 14 18 18 C 1.46928 * 118.74037 * 306.64176 * 6 5 4 19 19 H 1.08997 * 109.58918 * 293.57517 * 18 6 5 20 20 C 1.52994 * 109.58481 * 173.14302 * 18 6 5 21 21 N 1.46503 * 109.47152 * 68.56698 * 20 18 6 22 22 C 1.36936 * 120.00150 * 174.78749 * 21 20 18 23 23 H 1.08003 * 119.99704 * 359.97438 * 22 21 20 24 24 C 1.38810 * 119.99734 * 180.02562 * 22 21 20 25 25 N 1.31612 * 120.00547 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99582 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46956 * 60.00420 * 26 24 22 28 28 H 1.48501 * 109.46928 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.47514 * 300.00021 * 26 24 22 30 30 C 1.52765 * 109.00251 * 53.31018 * 18 6 5 31 31 H 1.09005 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47108 * 299.96577 * 1 2 3 33 33 H 1.08994 * 109.47540 * 59.97480 * 1 2 3 34 34 H 1.09000 * 109.49826 * 58.65844 * 4 2 1 35 35 H 1.09002 * 109.52111 * 298.57599 * 4 2 1 36 36 H 1.09001 * 109.58492 * 294.84817 * 5 4 2 37 37 H 1.08997 * 109.70609 * 174.49051 * 5 4 2 38 38 H 1.07998 * 126.48609 * 0.05301 * 10 9 7 39 39 H 1.08000 * 120.44939 * 0.68039 * 12 11 10 40 40 H 1.07999 * 120.32131 * 180.27239 * 13 12 11 41 41 H 1.08001 * 119.79268 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.46934 * 188.56542 * 20 18 6 43 43 H 1.09003 * 109.47590 * 308.56395 * 20 18 6 44 44 H 0.97001 * 119.99802 * 354.78810 * 21 20 18 45 45 H 0.97003 * 120.00509 * 180.02562 * 25 24 22 46 46 H 1.09004 * 109.56100 * 185.54811 * 30 18 6 47 47 H 1.09004 * 109.38363 * 65.51717 * 30 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6887 -1.2643 6 7 4.0679 -1.2488 0.0001 7 6 4.9615 -2.2577 0.0002 8 8 5.2697 -2.7967 1.0455 9 6 5.5657 -2.7083 -1.2686 10 6 6.3727 -3.7973 -1.4289 11 7 6.7051 -3.8562 -2.7483 12 6 7.4846 -4.7200 -3.4654 13 6 7.6411 -4.5170 -4.7957 14 6 7.0052 -3.4244 -5.4042 15 7 6.2658 -2.6066 -4.6940 16 6 6.1009 -2.7942 -3.3746 17 7 5.4168 -2.1159 -2.4693 18 6 3.5672 -0.6921 1.2643 19 1 3.9097 0.3371 1.3714 20 6 4.0831 -1.5320 2.4344 21 7 5.5309 -1.3500 2.5652 22 6 6.2008 -1.9216 3.6139 23 1 5.6618 -2.5061 4.3448 24 6 7.5725 -1.7486 3.7380 25 7 8.2293 -1.0359 2.8477 26 14 8.4863 -2.5277 5.1690 27 1 8.3132 -4.0019 5.1231 28 1 9.9307 -2.1962 5.0733 29 1 7.9416 -2.0050 6.4477 30 6 2.0399 -0.7206 1.2501 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8902 33 1 -0.3634 0.5142 -0.8897 34 1 1.6571 -0.2209 -2.1399 35 1 1.6978 -1.7558 -1.2387 36 1 3.9142 0.3408 -1.3675 37 1 3.9437 -1.2832 -2.0985 38 1 6.6847 -4.4846 -0.6565 39 1 7.9656 -5.5557 -2.9789 40 1 8.2491 -5.1899 -5.3821 41 1 7.1255 -3.2557 -6.4642 42 1 3.5923 -1.2138 3.3542 43 1 3.8642 -2.5840 2.2510 44 1 6.0149 -0.8247 1.9090 45 1 9.1879 -0.9154 2.9342 46 1 1.6573 -0.2205 2.1399 47 1 1.6974 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316705766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:08 Heat of formation + Delta-G solvation = 114.999550 kcal Electronic energy + Delta-G solvation = -31020.522983 eV Core-core repulsion = 27013.578666 eV Total energy + Delta-G solvation = -4006.944317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.10756 -41.45486 -39.23626 -38.41052 -36.36313 -35.72278 -34.71169 -33.78070 -31.99019 -31.48718 -30.46358 -29.25317 -27.15980 -26.32548 -24.68702 -24.53245 -24.28255 -23.71864 -22.42579 -21.07943 -20.37185 -19.38327 -18.83648 -18.65644 -17.62086 -17.48881 -16.81592 -16.73938 -16.65125 -15.95167 -15.62013 -15.45643 -15.28895 -15.15339 -14.90845 -14.78176 -14.56257 -14.51847 -14.03698 -13.83292 -13.66146 -13.39874 -13.17000 -12.97419 -12.81655 -12.76881 -12.65262 -12.56163 -12.18975 -12.14132 -11.94107 -11.78742 -11.59076 -11.24713 -11.10493 -10.90125 -10.57302 -10.21047 -10.03585 -9.50967 -9.31006 -8.63172 -7.82818 -5.03087 -0.49434 -0.00029 1.00833 1.26147 1.43517 1.48754 1.54097 2.05826 2.37993 2.49207 2.61912 2.65956 3.32059 3.50208 3.52210 3.64351 3.74183 3.83795 3.93668 4.02818 4.11715 4.16116 4.30559 4.36983 4.39648 4.47555 4.54832 4.58628 4.69763 4.78694 4.79886 4.87315 4.93360 4.96369 5.04372 5.11470 5.14938 5.20009 5.22386 5.31700 5.42602 5.47096 5.52466 5.52904 5.57161 5.92880 6.36645 6.38670 6.59001 6.78840 7.40883 7.45173 8.21017 8.45380 9.41869 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007351 B = 0.004963 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.958422 B = 5640.945507 C = 8997.452356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.116 4.116 5 C 0.081 3.919 6 N -0.596 5.596 7 C 0.554 3.446 8 O -0.492 6.492 9 C 0.008 3.992 10 C -0.022 4.022 11 N -0.403 5.403 12 C 0.094 3.906 13 C -0.184 4.184 14 C 0.189 3.811 15 N -0.479 5.479 16 C 0.362 3.638 17 N -0.475 5.475 18 C 0.145 3.855 19 H 0.058 0.942 20 C 0.163 3.837 21 N -0.705 5.705 22 C -0.212 4.212 23 H 0.066 0.934 24 C -0.085 4.085 25 N -0.977 5.977 26 Si 0.970 3.030 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.278 1.278 30 C -0.110 4.110 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.202 0.798 39 H 0.210 0.790 40 H 0.221 0.779 41 H 0.231 0.769 42 H 0.020 0.980 43 H 0.028 0.972 44 H 0.365 0.635 45 H 0.244 0.756 46 H 0.087 0.913 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.413 -7.149 -21.456 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.041 4.041 6 N -0.331 5.331 7 C 0.339 3.661 8 O -0.364 6.364 9 C -0.124 4.124 10 C -0.157 4.157 11 N -0.080 5.080 12 C -0.035 4.035 13 C -0.206 4.206 14 C 0.002 3.998 15 N -0.193 5.193 16 C 0.013 3.987 17 N -0.201 5.201 18 C 0.042 3.958 19 H 0.076 0.924 20 C 0.037 3.963 21 N -0.346 5.346 22 C -0.344 4.344 23 H 0.084 0.916 24 C -0.275 4.275 25 N -0.630 5.630 26 Si 0.800 3.200 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.204 1.204 30 C -0.148 4.148 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.147 0.853 38 H 0.219 0.781 39 H 0.227 0.773 40 H 0.237 0.763 41 H 0.247 0.753 42 H 0.038 0.962 43 H 0.045 0.955 44 H 0.196 0.804 45 H 0.053 0.947 46 H 0.105 0.895 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.248 -6.080 -20.944 23.689 hybrid contribution 1.953 -1.293 1.358 2.707 sum -7.296 -7.373 -19.587 22.164 Atomic orbital electron populations 1.21748 0.93160 1.02032 1.02505 1.21122 0.96961 0.99155 0.93528 0.91031 1.21917 0.93828 1.00826 0.98853 1.22625 0.94965 0.99756 0.86764 1.47719 1.42898 1.34809 1.07662 1.17375 0.80253 0.82402 0.86046 1.91169 1.60562 1.54899 1.29723 1.20917 1.02546 0.96239 0.92696 1.22613 1.04690 1.03685 0.84737 1.43890 1.33330 1.22056 1.08683 1.23229 0.91895 0.94609 0.93736 1.22488 1.03769 1.01555 0.92802 1.24410 0.85965 0.87175 1.02250 1.68101 1.20834 1.30536 0.99835 1.22400 0.97318 0.87274 0.91748 1.70478 1.23689 1.27670 0.98236 1.21366 0.95346 0.96274 0.82851 0.92402 1.20958 0.84414 0.97119 0.93814 1.42376 1.03107 1.60219 1.28851 1.19493 0.90924 1.22835 1.01167 0.91625 1.25406 0.97224 1.03039 1.01840 1.69853 1.07032 1.47321 1.38795 0.85234 0.77145 0.78079 0.79500 1.21027 1.22268 1.20436 1.21826 0.91734 1.01583 0.99697 0.92777 0.91986 0.91441 0.89028 0.92537 0.93058 0.85312 0.78146 0.77317 0.76261 0.75289 0.96227 0.95469 0.80422 0.94737 0.89500 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.09 -2.09 2.68 -10.77 -0.03 -2.12 16 3 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -2.91 5.36 30.67 0.16 -2.75 16 5 C 0.08 2.65 6.10 86.36 0.53 3.18 16 6 N -0.60 -23.47 2.98 -799.50 -2.38 -25.85 16 7 C 0.55 25.06 7.01 86.71 0.61 25.67 16 8 O -0.49 -25.99 10.66 -3.99 -0.04 -26.03 16 9 C 0.01 0.32 6.64 40.76 0.27 0.59 16 10 C -0.02 -0.75 11.48 83.61 0.96 0.21 16 11 N -0.40 -10.92 2.93 -356.81 -1.05 -11.97 16 12 C 0.09 1.36 11.05 83.30 0.92 2.28 16 13 C -0.18 -1.35 10.06 22.13 0.22 -1.13 16 14 C 0.19 2.22 11.27 85.30 0.96 3.18 16 15 N -0.48 -11.93 10.48 -197.17 -2.07 -14.00 16 16 C 0.36 11.48 8.90 261.35 2.33 13.81 16 17 N -0.47 -17.82 7.76 -188.81 -1.47 -19.28 16 18 C 0.14 5.58 2.92 44.83 0.13 5.71 16 19 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 20 C 0.16 7.71 4.86 86.38 0.42 8.13 16 21 N -0.71 -40.81 3.21 -343.44 -1.10 -41.91 16 22 C -0.21 -13.15 9.71 84.03 0.82 -12.34 16 23 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 24 C -0.08 -5.31 5.50 84.86 0.47 -4.85 16 25 N -0.98 -65.32 13.06 21.65 0.28 -65.04 16 26 Si 0.97 50.21 29.55 68.60 2.03 52.24 16 27 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 28 H -0.30 -15.27 7.11 99.48 0.71 -14.57 16 29 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 30 C -0.11 -3.15 4.62 30.53 0.14 -3.01 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.13 4.54 4.10 -23.53 -0.10 4.44 16 38 H 0.20 6.49 8.06 -2.91 -0.02 6.47 16 39 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.22 -0.79 8.06 -2.91 -0.02 -0.82 16 41 H 0.23 0.28 8.06 -2.91 -0.02 0.26 16 42 H 0.02 0.91 8.13 -2.38 -0.02 0.89 16 43 H 0.03 1.39 6.35 -2.39 -0.02 1.38 16 44 H 0.36 22.93 6.99 -92.71 -0.65 22.29 16 45 H 0.24 15.82 8.31 -92.71 -0.77 15.05 16 46 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -90.95 374.68 4.03 -86.91 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.26 Total: 30.18 kcal Atomic # 6 Polarization: 25.18 SS G_CDS: 9.57 Total: 34.75 kcal Atomic # 7 Polarization: -170.27 SS G_CDS: -7.78 Total: -178.05 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.04 Total: -26.03 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.03 Total: 52.24 kcal Total: -90.95 4.03 -86.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316705766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.914 kcal (2) G-P(sol) polarization free energy of solvation -90.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds