Wall clock time and date at job start Wed Apr 1 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45985 * 2 1 4 4 C 1.53038 * 109.45886 * 240.02522 * 2 1 3 5 5 C 1.53190 * 109.31291 * 178.61348 * 4 2 1 6 6 N 1.46928 * 108.77407 * 54.63558 * 5 4 2 7 7 C 1.34779 * 120.63092 * 126.37376 * 6 5 4 8 8 O 1.21454 * 120.00202 * 186.87345 * 7 6 5 9 9 C 1.48636 * 120.00059 * 6.86635 * 7 6 5 10 10 N 1.33508 * 120.60319 * 35.81585 * 9 7 6 11 11 C 1.30808 * 122.65556 * 179.77118 * 10 9 7 12 12 N 1.34054 * 123.37810 * 0.47972 * 11 10 9 13 13 H 0.97004 * 120.20980 * 179.76466 * 12 11 10 14 14 C 1.36857 * 119.57425 * 359.78785 * 12 11 10 15 15 N 1.31636 * 135.96392 * 179.97438 * 14 12 11 16 16 C 1.33523 * 110.83740 * 180.02562 * 15 14 12 17 17 C 1.36073 * 110.92937 * 0.02562 * 16 15 14 18 18 C 1.39541 * 120.60300 * 216.08919 * 9 7 6 19 19 C 1.46927 * 118.74120 * 306.39185 * 6 5 4 20 20 H 1.09002 * 109.58497 * 293.67864 * 19 6 5 21 21 C 1.52990 * 109.58796 * 173.39673 * 19 6 5 22 22 N 1.46499 * 109.47666 * 69.83569 * 21 19 6 23 23 C 1.36932 * 120.00718 * 174.80541 * 22 21 19 24 24 H 1.07997 * 119.99590 * 359.97438 * 23 22 21 25 25 C 1.38812 * 120.00367 * 179.72715 * 23 22 21 26 26 N 1.31620 * 119.99690 * 0.26905 * 25 23 22 27 27 Si 1.86793 * 119.99963 * 180.27319 * 25 23 22 28 28 H 1.48495 * 109.47488 * 59.99583 * 27 25 23 29 29 H 1.48501 * 109.46915 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47280 * 299.99524 * 27 25 23 31 31 C 1.53035 * 109.46075 * 119.95745 * 2 1 3 32 32 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47211 * 299.97236 * 1 2 3 34 34 H 1.08996 * 109.47051 * 59.97711 * 1 2 3 35 35 H 1.09000 * 109.49943 * 58.66480 * 4 2 1 36 36 H 1.09007 * 109.52654 * 298.58011 * 4 2 1 37 37 H 1.09000 * 109.59246 * 294.84912 * 5 4 2 38 38 H 1.08999 * 109.70972 * 174.49180 * 5 4 2 39 39 H 1.07999 * 118.30939 * 180.28695 * 11 10 9 40 40 H 1.07999 * 124.53142 * 180.02562 * 16 15 14 41 41 H 1.07999 * 126.72150 * 179.97438 * 17 16 15 42 42 H 1.08999 * 109.47722 * 309.83436 * 21 19 6 43 43 H 1.09008 * 109.47075 * 189.83324 * 21 19 6 44 44 H 0.97008 * 119.99742 * 354.80156 * 22 21 19 45 45 H 0.96996 * 119.99705 * 180.02562 * 26 25 23 46 46 H 1.09005 * 109.50234 * 61.43129 * 31 2 1 47 47 H 1.09001 * 109.49940 * 301.33637 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0678 -1.2488 0.0002 7 6 4.9615 -2.2578 0.0003 8 8 5.2700 -2.7956 1.0447 9 6 5.5693 -2.7124 -1.2776 10 7 5.8536 -1.8367 -2.2445 11 6 6.3924 -2.1918 -3.3823 12 7 6.7001 -3.4601 -3.6887 13 1 7.0957 -3.6723 -4.5485 14 6 6.4519 -4.4536 -2.7807 15 7 6.6155 -5.7590 -2.7379 16 6 6.1881 -6.2534 -1.5736 17 6 5.7081 -5.2640 -0.7722 18 6 5.8479 -4.0630 -1.4909 19 6 3.5714 -0.6884 1.2644 20 1 3.9164 0.3403 1.3685 21 6 4.0912 -1.5247 2.4353 22 7 5.5344 -1.3189 2.5798 23 6 6.2048 -1.8840 3.6316 24 1 5.6694 -2.4811 4.3549 25 6 7.5733 -1.6936 3.7654 26 7 8.2256 -0.9655 2.8841 27 14 8.4890 -2.4709 5.1960 28 1 8.3360 -3.9468 5.1384 29 1 9.9293 -2.1193 5.1114 30 1 7.9298 -1.9648 6.4752 31 6 2.0399 -0.7205 1.2501 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8902 34 1 -0.3633 0.5142 -0.8897 35 1 1.6572 -0.2210 -2.1398 36 1 1.6978 -1.7559 -1.2386 37 1 3.9143 0.3407 -1.3674 38 1 3.9438 -1.2833 -2.0984 39 1 6.5972 -1.4241 -4.1137 40 1 6.2193 -7.2987 -1.3040 41 1 5.3001 -5.3783 0.2211 42 1 3.8919 -2.5794 2.2454 43 1 3.5870 -1.2190 3.3522 44 1 6.0152 -0.7822 1.9303 45 1 9.1819 -0.8328 2.9773 46 1 1.6978 -1.7555 1.2386 47 1 1.6573 -0.2204 2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479567275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:34 Heat of formation + Delta-G solvation = 122.131144 kcal Electronic energy + Delta-G solvation = -31447.408052 eV Core-core repulsion = 27440.772984 eV Total energy + Delta-G solvation = -4006.635068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.48980 -39.99567 -38.24851 -37.29408 -35.21572 -34.33786 -33.45824 -32.12078 -30.09160 -29.99333 -28.74424 -28.15898 -25.71810 -25.08380 -23.37448 -22.91691 -22.89183 -21.73633 -20.62551 -20.06465 -19.24006 -18.06401 -17.60180 -16.99953 -16.49127 -15.84364 -15.62900 -15.25756 -14.99886 -14.63511 -14.39819 -14.34900 -13.99038 -13.49961 -13.44727 -13.33750 -13.00656 -12.79844 -12.68157 -12.49696 -12.25059 -11.89723 -11.85769 -11.70072 -11.63264 -11.27437 -11.06644 -10.91694 -10.84761 -10.74399 -10.44473 -10.36883 -10.13224 -9.93855 -9.80227 -9.31884 -9.04344 -8.45697 -8.21458 -8.07372 -7.49624 -6.85158 -5.96127 -2.85154 -0.00672 1.76853 2.52519 3.12244 3.36226 3.40544 3.44067 3.45759 3.75638 3.88047 4.24105 4.41712 4.47968 4.77157 4.79940 4.89415 4.90336 5.09922 5.21876 5.32996 5.42035 5.46054 5.51120 5.58365 5.61755 5.66284 5.73717 5.78809 5.93825 5.94799 6.02971 6.05902 6.08365 6.13673 6.19756 6.28900 6.33727 6.48662 6.56371 6.67145 6.76922 6.87200 7.02331 7.24282 7.40559 7.52887 7.81893 7.98647 8.22208 8.32343 8.87904 9.31562 9.91709 10.25150 11.23917 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007051 B = 0.005753 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.929543 B = 4865.886062 C = 7712.568546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.131 4.131 5 C 0.117 3.883 6 N -0.602 5.602 7 C 0.520 3.480 8 O -0.434 6.434 9 C 0.193 3.807 10 N -0.510 5.510 11 C 0.331 3.669 12 N -0.533 5.533 13 H 0.419 0.581 14 C 0.239 3.761 15 N -0.525 5.525 16 C 0.033 3.967 17 C -0.191 4.191 18 C -0.167 4.167 19 C 0.144 3.856 20 H 0.070 0.930 21 C 0.147 3.853 22 N -0.671 5.671 23 C -0.181 4.181 24 H 0.077 0.923 25 C -0.027 4.027 26 N -0.904 5.904 27 Si 0.915 3.085 28 H -0.283 1.283 29 H -0.289 1.289 30 H -0.284 1.284 31 C -0.121 4.121 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.210 0.790 40 H 0.157 0.843 41 H 0.141 0.859 42 H 0.054 0.946 43 H 0.025 0.975 44 H 0.384 0.616 45 H 0.261 0.739 46 H 0.067 0.933 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 2.724 -14.425 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.169 4.169 5 C -0.006 4.006 6 N -0.340 5.340 7 C 0.305 3.695 8 O -0.301 6.301 9 C 0.058 3.942 10 N -0.232 5.232 11 C 0.047 3.953 12 N -0.141 5.141 13 H 0.257 0.743 14 C -0.013 4.013 15 N -0.246 5.246 16 C -0.110 4.110 17 C -0.215 4.215 18 C -0.179 4.179 19 C 0.041 3.959 20 H 0.088 0.912 21 C 0.020 3.980 22 N -0.308 5.308 23 C -0.314 4.314 24 H 0.095 0.905 25 C -0.225 4.225 26 N -0.550 5.550 27 Si 0.745 3.255 28 H -0.209 1.209 29 H -0.215 1.215 30 H -0.210 1.210 31 C -0.159 4.159 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.226 0.774 40 H 0.174 0.826 41 H 0.158 0.842 42 H 0.072 0.928 43 H 0.042 0.958 44 H 0.218 0.782 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.370 2.525 -13.909 18.141 hybrid contribution 0.944 -0.569 0.427 1.182 sum -10.426 1.956 -13.482 17.155 Atomic orbital electron populations 1.21817 0.95355 1.01659 1.01383 1.21106 0.95284 0.99618 0.94972 0.91081 1.22041 0.96215 1.00960 0.97728 1.21721 0.92490 0.99633 0.86804 1.47554 1.44310 1.35799 1.06323 1.17780 0.81972 0.82860 0.86875 1.91093 1.58595 1.51915 1.28454 1.21237 0.91911 0.88744 0.92349 1.67994 1.18746 1.35731 1.00699 1.24567 0.91837 0.83454 0.95411 1.41522 1.49483 1.05815 1.17303 0.74336 1.20340 1.02098 0.90020 0.88889 1.69371 1.26006 1.04660 1.24558 1.22339 0.99999 0.98979 0.89710 1.21353 1.08274 0.90957 1.00917 1.20602 1.07288 0.93932 0.96118 1.21481 0.92782 0.97803 0.83880 0.91188 1.21155 0.85849 0.98329 0.92651 1.42673 1.02829 1.56703 1.28641 1.19519 0.90750 1.21067 1.00027 0.90526 1.24846 0.96578 1.01440 0.99641 1.69665 1.08635 1.40946 1.35746 0.86103 0.78767 0.79256 0.81347 1.20913 1.21498 1.21036 1.21963 0.94972 1.01296 0.97718 0.92832 0.92735 0.92939 0.91325 0.91899 0.91865 0.89045 0.77416 0.82572 0.84156 0.92827 0.95774 0.78161 0.92969 0.91446 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.09 -0.96 2.68 -90.58 -0.24 -1.20 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.39 5.36 -26.61 -0.14 -1.54 16 5 C 0.12 1.51 5.84 -3.71 -0.02 1.49 16 6 N -0.60 -10.04 2.97 -166.04 -0.49 -10.54 16 7 C 0.52 10.53 6.90 -11.97 -0.08 10.45 16 8 O -0.43 -10.50 10.42 5.41 0.06 -10.45 16 9 C 0.19 3.59 5.93 -82.36 -0.49 3.10 16 10 N -0.51 -7.47 7.60 -10.67 -0.08 -7.55 16 11 C 0.33 3.34 12.24 -91.01 -1.11 2.23 16 12 N -0.53 -5.93 5.32 -12.02 -0.06 -6.00 16 13 H 0.42 2.93 8.93 -40.82 -0.36 2.57 16 14 C 0.24 4.04 8.72 -154.20 -1.34 2.70 16 15 N -0.53 -9.66 11.16 -10.91 -0.12 -9.78 16 16 C 0.03 0.60 11.70 -17.59 -0.21 0.40 16 17 C -0.19 -3.78 10.55 -39.45 -0.42 -4.19 16 18 C -0.17 -3.24 6.16 -104.64 -0.64 -3.88 16 19 C 0.14 2.37 2.93 -67.60 -0.20 2.17 16 20 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 21 C 0.15 3.03 4.87 -4.05 -0.02 3.01 16 22 N -0.67 -17.05 3.27 -59.91 -0.20 -17.24 16 23 C -0.18 -5.05 9.75 -15.06 -0.15 -5.20 16 24 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 25 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 26 N -0.90 -27.23 13.06 55.49 0.72 -26.50 16 27 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 C -0.12 -1.53 4.64 -26.61 -0.12 -1.66 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.19 5.06 -51.93 -0.26 0.92 16 39 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 41 H 0.14 2.83 8.02 -52.49 -0.42 2.41 16 42 H 0.05 1.21 6.24 -51.93 -0.32 0.88 16 43 H 0.02 0.48 8.12 -51.92 -0.42 0.06 16 44 H 0.38 10.53 7.10 -40.82 -0.29 10.24 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -36.10 374.77 -11.20 -47.30 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -6.70 Total: 11.52 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -4.94 Total: 6.06 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -0.23 Total: -77.61 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.45 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.10 -11.20 -47.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479567275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.434 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds