Wall clock time and date at job start Wed Apr 1 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45985 * 2 1 4 4 C 1.53038 * 109.45886 * 240.02522 * 2 1 3 5 5 C 1.53190 * 109.31291 * 178.61348 * 4 2 1 6 6 N 1.46928 * 108.77407 * 54.63558 * 5 4 2 7 7 C 1.34779 * 120.63092 * 126.37376 * 6 5 4 8 8 O 1.21454 * 120.00202 * 186.87345 * 7 6 5 9 9 C 1.48636 * 120.00059 * 6.86635 * 7 6 5 10 10 N 1.33508 * 120.60319 * 35.81585 * 9 7 6 11 11 C 1.30808 * 122.65556 * 179.77118 * 10 9 7 12 12 N 1.34054 * 123.37810 * 0.47972 * 11 10 9 13 13 H 0.97004 * 120.20980 * 179.76466 * 12 11 10 14 14 C 1.36857 * 119.57425 * 359.78785 * 12 11 10 15 15 N 1.31636 * 135.96392 * 179.97438 * 14 12 11 16 16 C 1.33523 * 110.83740 * 180.02562 * 15 14 12 17 17 C 1.36073 * 110.92937 * 0.02562 * 16 15 14 18 18 C 1.39541 * 120.60300 * 216.08919 * 9 7 6 19 19 C 1.46927 * 118.74120 * 306.39185 * 6 5 4 20 20 H 1.09002 * 109.58497 * 293.67864 * 19 6 5 21 21 C 1.52990 * 109.58796 * 173.39673 * 19 6 5 22 22 N 1.46499 * 109.47666 * 69.83569 * 21 19 6 23 23 C 1.36932 * 120.00718 * 174.80541 * 22 21 19 24 24 H 1.07997 * 119.99590 * 359.97438 * 23 22 21 25 25 C 1.38812 * 120.00367 * 179.72715 * 23 22 21 26 26 N 1.31620 * 119.99690 * 0.26905 * 25 23 22 27 27 Si 1.86793 * 119.99963 * 180.27319 * 25 23 22 28 28 H 1.48495 * 109.47488 * 59.99583 * 27 25 23 29 29 H 1.48501 * 109.46915 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47280 * 299.99524 * 27 25 23 31 31 C 1.53035 * 109.46075 * 119.95745 * 2 1 3 32 32 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47211 * 299.97236 * 1 2 3 34 34 H 1.08996 * 109.47051 * 59.97711 * 1 2 3 35 35 H 1.09000 * 109.49943 * 58.66480 * 4 2 1 36 36 H 1.09007 * 109.52654 * 298.58011 * 4 2 1 37 37 H 1.09000 * 109.59246 * 294.84912 * 5 4 2 38 38 H 1.08999 * 109.70972 * 174.49180 * 5 4 2 39 39 H 1.07999 * 118.30939 * 180.28695 * 11 10 9 40 40 H 1.07999 * 124.53142 * 180.02562 * 16 15 14 41 41 H 1.07999 * 126.72150 * 179.97438 * 17 16 15 42 42 H 1.08999 * 109.47722 * 309.83436 * 21 19 6 43 43 H 1.09008 * 109.47075 * 189.83324 * 21 19 6 44 44 H 0.97008 * 119.99742 * 354.80156 * 22 21 19 45 45 H 0.96996 * 119.99705 * 180.02562 * 26 25 23 46 46 H 1.09005 * 109.50234 * 61.43129 * 31 2 1 47 47 H 1.09001 * 109.49940 * 301.33637 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0678 -1.2488 0.0002 7 6 4.9615 -2.2578 0.0003 8 8 5.2700 -2.7956 1.0447 9 6 5.5693 -2.7124 -1.2776 10 7 5.8536 -1.8367 -2.2445 11 6 6.3924 -2.1918 -3.3823 12 7 6.7001 -3.4601 -3.6887 13 1 7.0957 -3.6723 -4.5485 14 6 6.4519 -4.4536 -2.7807 15 7 6.6155 -5.7590 -2.7379 16 6 6.1881 -6.2534 -1.5736 17 6 5.7081 -5.2640 -0.7722 18 6 5.8479 -4.0630 -1.4909 19 6 3.5714 -0.6884 1.2644 20 1 3.9164 0.3403 1.3685 21 6 4.0912 -1.5247 2.4353 22 7 5.5344 -1.3189 2.5798 23 6 6.2048 -1.8840 3.6316 24 1 5.6694 -2.4811 4.3549 25 6 7.5733 -1.6936 3.7654 26 7 8.2256 -0.9655 2.8841 27 14 8.4890 -2.4709 5.1960 28 1 8.3360 -3.9468 5.1384 29 1 9.9293 -2.1193 5.1114 30 1 7.9298 -1.9648 6.4752 31 6 2.0399 -0.7205 1.2501 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8902 34 1 -0.3633 0.5142 -0.8897 35 1 1.6572 -0.2210 -2.1398 36 1 1.6978 -1.7559 -1.2386 37 1 3.9143 0.3407 -1.3674 38 1 3.9438 -1.2833 -2.0984 39 1 6.5972 -1.4241 -4.1137 40 1 6.2193 -7.2987 -1.3040 41 1 5.3001 -5.3783 0.2211 42 1 3.8919 -2.5794 2.2454 43 1 3.5870 -1.2190 3.3522 44 1 6.0152 -0.7822 1.9303 45 1 9.1819 -0.8328 2.9773 46 1 1.6978 -1.7555 1.2386 47 1 1.6573 -0.2204 2.1398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479567275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:33 Heat of formation + Delta-G solvation = 96.231603 kcal Electronic energy + Delta-G solvation = -31448.531140 eV Core-core repulsion = 27440.772984 eV Total energy + Delta-G solvation = -4007.758156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.94578 -41.42543 -39.66724 -38.60701 -36.72314 -35.86899 -34.70970 -33.66994 -31.55352 -31.50511 -30.18487 -29.29165 -27.18429 -26.58533 -24.63120 -24.48496 -24.05164 -23.22613 -22.06076 -21.18403 -20.51282 -19.50055 -19.16702 -18.61655 -17.81410 -17.27136 -17.04071 -16.68711 -16.60407 -15.94923 -15.88708 -15.48222 -15.31708 -14.97993 -14.82993 -14.57136 -14.49630 -14.16575 -14.02684 -13.83365 -13.71484 -13.40300 -13.16328 -12.88017 -12.80036 -12.71913 -12.56400 -12.52311 -12.19114 -12.04354 -11.87579 -11.72628 -11.55237 -11.26667 -11.09209 -10.94577 -10.85312 -10.06533 -9.68075 -9.50404 -9.00305 -8.68284 -7.87341 -5.06058 -1.24098 0.43447 1.30007 1.40492 1.45750 1.50660 1.63756 1.90353 2.24451 2.45413 2.59251 2.95926 3.04234 3.46779 3.53959 3.68393 3.77119 3.87650 3.94070 4.08099 4.10739 4.25748 4.35074 4.38422 4.43735 4.48902 4.57632 4.74534 4.81106 4.81911 4.87577 4.95351 5.02816 5.03572 5.12899 5.16395 5.16909 5.24628 5.34553 5.42387 5.44841 5.50812 5.59376 5.64710 5.81270 5.94559 6.33874 6.44433 6.56529 6.81591 7.30742 7.40697 8.18786 8.41792 9.37058 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007051 B = 0.005753 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3969.929543 B = 4865.886062 C = 7712.568546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.123 4.123 5 C 0.110 3.890 6 N -0.592 5.592 7 C 0.521 3.479 8 O -0.480 6.480 9 C 0.217 3.783 10 N -0.529 5.529 11 C 0.377 3.623 12 N -0.502 5.502 13 H 0.450 0.550 14 C 0.253 3.747 15 N -0.535 5.535 16 C 0.048 3.952 17 C -0.226 4.226 18 C -0.204 4.204 19 C 0.149 3.851 20 H 0.069 0.931 21 C 0.158 3.842 22 N -0.704 5.704 23 C -0.212 4.212 24 H 0.062 0.938 25 C -0.083 4.083 26 N -0.972 5.972 27 Si 0.965 3.035 28 H -0.290 1.290 29 H -0.294 1.294 30 H -0.274 1.274 31 C -0.112 4.112 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.293 0.707 40 H 0.184 0.816 41 H 0.121 0.879 42 H 0.024 0.976 43 H 0.019 0.981 44 H 0.366 0.634 45 H 0.245 0.755 46 H 0.057 0.943 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 3.274 -21.207 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.162 4.162 5 C -0.012 4.012 6 N -0.328 5.328 7 C 0.304 3.696 8 O -0.350 6.350 9 C 0.081 3.919 10 N -0.250 5.250 11 C 0.096 3.904 12 N -0.108 5.108 13 H 0.294 0.706 14 C -0.001 4.001 15 N -0.257 5.257 16 C -0.094 4.094 17 C -0.250 4.250 18 C -0.216 4.216 19 C 0.046 3.954 20 H 0.087 0.913 21 C 0.031 3.969 22 N -0.344 5.344 23 C -0.345 4.345 24 H 0.080 0.920 25 C -0.274 4.274 26 N -0.625 5.625 27 Si 0.796 3.204 28 H -0.217 1.217 29 H -0.221 1.221 30 H -0.200 1.200 31 C -0.151 4.151 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.308 0.692 40 H 0.201 0.799 41 H 0.139 0.861 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.198 0.802 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.160 2.998 -20.941 24.914 hybrid contribution 1.225 -1.083 1.360 2.127 sum -11.935 1.915 -19.581 23.011 Atomic orbital electron populations 1.21764 0.93552 1.01822 1.02557 1.21106 0.96678 0.99522 0.93268 0.90171 1.22014 0.94044 1.00884 0.99208 1.22071 0.94345 1.00170 0.84611 1.47793 1.42645 1.34163 1.08179 1.18447 0.81411 0.82599 0.87105 1.91167 1.59524 1.54189 1.30133 1.21403 0.89311 0.88982 0.92162 1.68109 1.20551 1.34809 1.01538 1.26383 0.85506 0.83992 0.94542 1.41860 1.46587 1.04964 1.17383 0.70648 1.20573 1.00269 0.90404 0.88804 1.69480 1.26671 1.05115 1.24397 1.22819 0.97530 1.00043 0.89048 1.21428 1.10225 0.92397 1.00972 1.20979 1.08436 0.94296 0.97923 1.21451 0.95156 0.96476 0.82362 0.91278 1.21012 0.84419 0.97174 0.94252 1.42318 1.03647 1.59463 1.29001 1.19446 0.91146 1.22477 1.01395 0.91958 1.25367 0.97290 1.02880 1.01832 1.69810 1.07403 1.46360 1.38916 0.85309 0.77422 0.77847 0.79871 1.21730 1.22062 1.20013 1.21928 0.91680 1.01426 1.00076 0.93182 0.92318 0.91089 0.87881 0.92908 0.90286 0.88566 0.69202 0.79880 0.86071 0.95878 0.96347 0.80205 0.94669 0.92424 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.57 2.68 -10.77 -0.03 -1.60 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.12 -2.14 5.36 30.67 0.16 -1.97 16 5 C 0.11 2.46 5.84 86.36 0.50 2.96 16 6 N -0.59 -19.62 2.97 -797.53 -2.37 -21.99 16 7 C 0.52 21.59 6.90 87.02 0.60 22.19 16 8 O -0.48 -25.12 10.42 -3.57 -0.04 -25.16 16 9 C 0.22 7.65 5.93 41.98 0.25 7.90 16 10 N -0.53 -12.76 7.60 -187.67 -1.43 -14.19 16 11 C 0.38 4.53 12.24 180.48 2.21 6.73 16 12 N -0.50 -7.42 5.32 -191.95 -1.02 -8.44 16 13 H 0.45 2.36 8.93 -92.71 -0.83 1.53 16 14 C 0.25 7.42 8.72 136.29 1.19 8.61 16 15 N -0.54 -17.69 11.16 -188.44 -2.10 -19.80 16 16 C 0.05 1.65 11.70 83.93 0.98 2.63 16 17 C -0.23 -8.99 10.55 22.35 0.24 -8.75 16 18 C -0.20 -7.58 6.16 -19.88 -0.12 -7.70 16 19 C 0.15 5.08 2.93 44.97 0.13 5.21 16 20 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 21 C 0.16 7.17 4.87 86.38 0.42 7.59 16 22 N -0.70 -39.67 3.27 -343.47 -1.12 -40.79 16 23 C -0.21 -13.19 9.75 84.03 0.82 -12.37 16 24 H 0.06 3.81 7.83 -2.91 -0.02 3.79 16 25 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 26 N -0.97 -64.54 13.06 21.65 0.28 -64.25 16 27 Si 0.97 51.11 29.55 68.60 2.03 53.13 16 28 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 29 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 30 H -0.27 -13.70 7.11 99.48 0.71 -12.99 16 31 C -0.11 -2.81 4.64 30.67 0.14 -2.66 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 2.04 5.06 -2.39 -0.01 2.03 16 39 H 0.29 -1.11 8.06 -2.91 -0.02 -1.13 16 40 H 0.18 5.16 8.06 -2.91 -0.02 5.14 16 41 H 0.12 5.25 8.02 -2.91 -0.02 5.23 16 42 H 0.02 1.17 6.24 -2.39 -0.01 1.16 16 43 H 0.02 0.83 8.12 -2.38 -0.02 0.81 16 44 H 0.37 22.11 7.10 -92.70 -0.66 21.45 16 45 H 0.24 15.79 8.31 -92.71 -0.77 15.02 16 46 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -95.22 374.77 2.38 -92.83 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.47 Total: 25.95 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 8.62 Total: 22.69 kcal Atomic # 7 Polarization: -161.70 SS G_CDS: -7.76 Total: -169.45 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.04 Total: -25.16 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.03 Total: 53.13 kcal Total: -95.22 2.38 -92.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479567275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.067 kcal (2) G-P(sol) polarization free energy of solvation -95.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds