Wall clock time and date at job start Wed Apr 1 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.88536 * 2 1 4 4 C 1.55132 * 110.90610 * 124.09601 * 2 1 3 5 5 N 1.47429 * 104.72305 * 155.27632 * 4 2 1 6 6 C 1.34768 * 125.65217 * 155.81638 * 5 4 2 7 7 O 1.21589 * 120.00603 * 184.73440 * 6 5 4 8 8 C 1.47542 * 119.99840 * 4.73178 * 6 5 4 9 9 C 1.39402 * 120.75313 * 43.59791 * 8 6 5 10 10 N 1.31923 * 121.01719 * 179.97438 * 9 8 6 11 11 C 1.31791 * 122.59633 * 0.02562 * 10 9 8 12 12 C 1.39437 * 120.63680 * 359.97438 * 11 10 9 13 13 N 1.35708 * 134.43677 * 180.02562 * 12 11 10 14 14 C 1.30133 * 109.50115 * 179.97438 * 13 12 11 15 15 N 1.36257 * 110.05804 * 0.24468 * 14 13 12 16 16 C 1.46501 * 126.29565 * 179.73259 * 15 14 13 17 17 C 1.36918 * 107.40562 * 359.60802 * 15 14 13 18 18 C 1.47030 * 108.70075 * 335.55096 * 5 4 2 19 19 C 1.54319 * 107.26923 * 1.28998 * 18 5 4 20 20 H 1.09006 * 110.71836 * 263.64855 * 19 18 5 21 21 C 1.53003 * 110.72200 * 140.56132 * 19 18 5 22 22 N 1.46490 * 109.47427 * 66.44650 * 21 19 18 23 23 C 1.36941 * 120.00330 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99469 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00358 * 179.97438 * 23 22 21 26 26 N 1.31624 * 120.00050 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00140 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47118 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47095 * 119.99977 * 27 25 23 30 30 H 1.48497 * 109.47458 * 240.00306 * 27 25 23 31 31 H 1.09006 * 109.46717 * 183.88375 * 1 2 3 32 32 H 1.09002 * 109.46882 * 303.87711 * 1 2 3 33 33 H 1.08998 * 109.47061 * 63.88310 * 1 2 3 34 34 H 1.08992 * 110.50063 * 36.43101 * 4 2 1 35 35 H 1.08999 * 110.33865 * 274.03426 * 4 2 1 36 36 H 1.08002 * 119.49587 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.68356 * 180.02562 * 11 10 9 38 38 H 1.08002 * 124.96421 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.47413 * 95.69682 * 16 15 14 40 40 H 1.08998 * 109.47464 * 215.69879 * 16 15 14 41 41 H 1.09007 * 109.47215 * 335.69434 * 16 15 14 42 42 H 1.09002 * 109.88195 * 120.70570 * 18 5 4 43 43 H 1.09001 * 109.88203 * 241.71440 * 18 5 4 44 44 H 1.08995 * 109.47186 * 186.45365 * 21 19 18 45 45 H 1.09004 * 109.46349 * 306.44874 * 21 19 18 46 46 H 0.97001 * 120.00070 * 0.02562 * 22 21 19 47 47 H 0.96999 * 120.00235 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0835 -0.8124 1.2001 5 7 3.4272 -1.2434 0.7729 6 6 4.4477 -1.5622 1.5934 7 8 5.5414 -1.8227 1.1305 8 6 4.2377 -1.5951 3.0534 9 6 3.0961 -2.1826 3.5963 10 7 2.9033 -2.2154 4.9010 11 6 3.7628 -1.7031 5.7587 12 6 4.9348 -1.0939 5.3122 13 7 5.9857 -0.4921 5.9248 14 6 6.8350 -0.0827 5.0278 15 7 6.3818 -0.3902 3.7802 16 6 7.0545 -0.0883 2.5143 17 6 5.1834 -1.0359 3.9274 18 6 3.4675 -1.2739 -0.6965 19 6 2.0862 -0.8075 -1.2025 20 1 1.4479 -1.6627 -1.4245 21 6 2.2349 0.0884 -2.4338 22 7 2.7614 -0.6999 -3.5506 23 6 2.9796 -0.1061 -4.7652 24 1 2.7630 0.9434 -4.8997 25 6 3.4790 -0.8529 -5.8232 26 7 3.7424 -2.1321 -5.6594 27 14 3.7759 -0.0430 -7.4801 28 1 3.4020 1.3921 -7.4037 29 1 5.2121 -0.1614 -7.8387 30 1 2.9502 -0.7156 -8.5150 31 1 -0.3633 -1.0254 0.0696 32 1 -0.3633 0.5728 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 1.4524 -1.6786 1.3982 35 1 2.1516 -0.1809 2.0859 36 1 2.3584 -2.6184 2.9388 37 1 3.5578 -1.7565 6.8178 38 1 7.7613 0.4302 5.2411 39 1 7.6317 -0.9555 2.1937 40 1 6.3100 0.1532 1.7557 41 1 7.7224 0.7622 2.6515 42 1 4.2426 -0.5994 -1.0602 43 1 3.6678 -2.2885 -1.0409 44 1 1.2618 0.4978 -2.7049 45 1 2.9223 0.9039 -2.2088 46 1 2.9556 -1.6426 -3.4299 47 1 4.0910 -2.6541 -6.3989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501121447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:47 Heat of formation + Delta-G solvation = 69.616482 kcal Electronic energy + Delta-G solvation = -30061.887532 eV Core-core repulsion = 26052.975257 eV Total energy + Delta-G solvation = -4008.912275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.80268 -40.29863 -38.75462 -37.96579 -34.76323 -34.53452 -33.10509 -31.96666 -31.42992 -30.38273 -29.08692 -27.52968 -26.61933 -25.79323 -24.54493 -23.35940 -23.15190 -21.91264 -21.12248 -19.99248 -19.45655 -18.20900 -17.84351 -17.35474 -16.99218 -16.56302 -16.16674 -15.69167 -15.42041 -15.04323 -14.70996 -14.52260 -14.19480 -14.07737 -13.91249 -13.69716 -13.30830 -13.23198 -12.99141 -12.94452 -12.76163 -12.57086 -12.31983 -12.10602 -12.04151 -11.44145 -11.14079 -10.95327 -10.90024 -10.75167 -10.68670 -10.52087 -10.48867 -10.44566 -10.02193 -9.72510 -9.68063 -9.29093 -8.92645 -8.73944 -8.60349 -6.97325 -5.80142 -3.09616 0.14529 1.04522 2.14732 2.20192 2.62488 2.84013 3.40782 3.46257 3.48662 3.51710 3.72923 3.95893 4.10181 4.32182 4.38413 4.43058 4.53437 4.63628 4.67346 4.79326 4.81218 4.99579 5.08032 5.20893 5.29973 5.33308 5.39770 5.41208 5.44358 5.54367 5.65175 5.70340 5.75468 5.91374 5.92979 5.97081 6.05845 6.08961 6.14793 6.24591 6.31597 6.33078 6.59939 6.63821 6.76383 7.26420 7.37604 7.61559 7.66599 7.96205 8.38083 9.49602 10.05797 10.40112 11.42543 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.002636 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.036420 B =10617.981485 C =11689.152957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.100 3.900 5 N -0.607 5.607 6 C 0.574 3.426 7 O -0.533 6.533 8 C -0.164 4.164 9 C 0.134 3.866 10 N -0.487 5.487 11 C 0.192 3.808 12 C -0.015 4.015 13 N -0.479 5.479 14 C 0.263 3.737 15 N -0.477 5.477 16 C 0.080 3.920 17 C 0.118 3.882 18 C 0.117 3.883 19 C -0.100 4.100 20 H 0.088 0.912 21 C 0.165 3.835 22 N -0.733 5.733 23 C -0.241 4.241 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.221 0.779 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.020 0.980 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 4.449 23.552 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.023 4.023 5 N -0.340 5.340 6 C 0.361 3.639 7 O -0.411 6.411 8 C -0.173 4.173 9 C -0.017 4.017 10 N -0.196 5.196 11 C 0.026 3.974 12 C -0.136 4.136 13 N -0.198 5.198 14 C -0.023 4.023 15 N -0.164 5.164 16 C -0.061 4.061 17 C -0.002 4.002 18 C -0.005 4.005 19 C -0.119 4.119 20 H 0.106 0.894 21 C 0.037 3.963 22 N -0.377 5.377 23 C -0.372 4.372 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.238 0.762 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.033 4.136 24.181 24.532 hybrid contribution 1.134 0.382 -2.242 2.541 sum 1.100 4.518 21.939 22.426 Atomic orbital electron populations 1.21699 0.93451 1.02255 1.02336 1.22401 0.96422 0.99377 0.93513 0.89545 1.22635 0.83059 0.98484 0.98142 1.48483 1.12001 1.65636 1.07869 1.17589 0.83559 0.77673 0.85052 1.90817 1.23699 1.49537 1.77057 1.19840 0.96676 1.07557 0.93221 1.22819 0.93310 0.94062 0.91554 1.67723 1.30235 1.18556 1.03119 1.22298 0.85878 0.89063 1.00116 1.20144 0.98277 1.05750 0.89408 1.70488 1.02231 1.15942 1.31111 1.25620 0.99903 0.98679 0.78102 1.45267 1.16508 1.45498 1.09168 1.22257 0.98664 1.02828 0.82345 1.18666 0.88172 0.97594 0.95795 1.22112 0.98678 1.02672 0.76998 1.22543 0.94901 0.99362 0.95137 0.89360 1.20625 0.96726 0.92847 0.86071 1.42364 1.77861 1.09915 1.07580 1.19239 1.35943 0.94136 0.87888 0.91150 1.24746 1.02020 0.95814 0.98299 1.69666 1.50731 1.06054 1.31526 0.86130 0.77501 0.78319 0.84299 1.20569 1.21864 1.21828 0.92235 0.92564 0.91495 0.90755 0.90797 0.81523 0.81303 0.76248 0.89302 0.89271 0.89351 0.90419 0.90828 0.95714 0.96254 0.78229 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.31 37.16 0.35 -0.94 16 2 C -0.10 -1.07 3.10 -88.35 -0.27 -1.34 16 3 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 4 C 0.10 1.02 4.85 -2.41 -0.01 1.01 16 5 N -0.61 -8.10 3.32 -171.60 -0.57 -8.67 16 6 C 0.57 8.29 6.59 -12.47 -0.08 8.21 16 7 O -0.53 -9.22 14.31 5.29 0.08 -9.14 16 8 C -0.16 -2.08 5.23 -104.86 -0.55 -2.63 16 9 C 0.13 1.48 9.51 -17.08 -0.16 1.32 16 10 N -0.49 -5.40 10.30 -12.65 -0.13 -5.53 16 11 C 0.19 2.01 11.25 -17.12 -0.19 1.81 16 12 C -0.01 -0.18 7.27 -84.73 -0.62 -0.79 16 13 N -0.48 -5.34 11.28 -12.00 -0.14 -5.47 16 14 C 0.26 2.27 12.50 -89.56 -1.12 1.15 16 15 N -0.48 -5.02 3.18 -122.87 -0.39 -5.42 16 16 C 0.08 0.74 9.48 59.85 0.57 1.31 16 17 C 0.12 1.48 6.78 -83.81 -0.57 0.91 16 18 C 0.12 1.83 6.15 -3.06 -0.02 1.81 16 19 C -0.10 -1.45 2.48 -88.79 -0.22 -1.67 16 20 H 0.09 1.30 8.04 -51.93 -0.42 0.88 16 21 C 0.17 3.08 5.58 -4.05 -0.02 3.05 16 22 N -0.73 -17.83 5.45 -59.92 -0.33 -18.16 16 23 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 27 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 31 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.65 7.05 -51.93 -0.37 0.28 16 35 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 36 H 0.17 1.54 6.50 -52.49 -0.34 1.20 16 37 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.22 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 40 H 0.09 1.03 6.30 -51.93 -0.33 0.70 16 41 H 0.09 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.08 1.39 7.77 -51.93 -0.40 0.99 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.02 0.37 8.06 -51.93 -0.42 -0.04 16 46 H 0.38 9.87 7.52 -40.82 -0.31 9.56 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -34.52 383.00 -9.89 -44.41 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.72 Total: 6.21 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -3.17 Total: 6.00 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.83 Total: -70.43 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.52 -9.89 -44.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501121447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.030 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds