Wall clock time and date at job start Wed Apr 1 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.88536 * 2 1 4 4 C 1.55132 * 110.90610 * 124.09601 * 2 1 3 5 5 N 1.47429 * 104.72305 * 155.27632 * 4 2 1 6 6 C 1.34768 * 125.65217 * 155.81638 * 5 4 2 7 7 O 1.21589 * 120.00603 * 184.73440 * 6 5 4 8 8 C 1.47542 * 119.99840 * 4.73178 * 6 5 4 9 9 C 1.39402 * 120.75313 * 43.59791 * 8 6 5 10 10 N 1.31923 * 121.01719 * 179.97438 * 9 8 6 11 11 C 1.31791 * 122.59633 * 0.02562 * 10 9 8 12 12 C 1.39437 * 120.63680 * 359.97438 * 11 10 9 13 13 N 1.35708 * 134.43677 * 180.02562 * 12 11 10 14 14 C 1.30133 * 109.50115 * 179.97438 * 13 12 11 15 15 N 1.36257 * 110.05804 * 0.24468 * 14 13 12 16 16 C 1.46501 * 126.29565 * 179.73259 * 15 14 13 17 17 C 1.36918 * 107.40562 * 359.60802 * 15 14 13 18 18 C 1.47030 * 108.70075 * 335.55096 * 5 4 2 19 19 C 1.54319 * 107.26923 * 1.28998 * 18 5 4 20 20 H 1.09006 * 110.71836 * 263.64855 * 19 18 5 21 21 C 1.53003 * 110.72200 * 140.56132 * 19 18 5 22 22 N 1.46490 * 109.47427 * 66.44650 * 21 19 18 23 23 C 1.36941 * 120.00330 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99469 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00358 * 179.97438 * 23 22 21 26 26 N 1.31624 * 120.00050 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00140 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47118 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47095 * 119.99977 * 27 25 23 30 30 H 1.48497 * 109.47458 * 240.00306 * 27 25 23 31 31 H 1.09006 * 109.46717 * 183.88375 * 1 2 3 32 32 H 1.09002 * 109.46882 * 303.87711 * 1 2 3 33 33 H 1.08998 * 109.47061 * 63.88310 * 1 2 3 34 34 H 1.08992 * 110.50063 * 36.43101 * 4 2 1 35 35 H 1.08999 * 110.33865 * 274.03426 * 4 2 1 36 36 H 1.08002 * 119.49587 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.68356 * 180.02562 * 11 10 9 38 38 H 1.08002 * 124.96421 * 179.97438 * 14 13 12 39 39 H 1.08996 * 109.47413 * 95.69682 * 16 15 14 40 40 H 1.08998 * 109.47464 * 215.69879 * 16 15 14 41 41 H 1.09007 * 109.47215 * 335.69434 * 16 15 14 42 42 H 1.09002 * 109.88195 * 120.70570 * 18 5 4 43 43 H 1.09001 * 109.88203 * 241.71440 * 18 5 4 44 44 H 1.08995 * 109.47186 * 186.45365 * 21 19 18 45 45 H 1.09004 * 109.46349 * 306.44874 * 21 19 18 46 46 H 0.97001 * 120.00070 * 0.02562 * 22 21 19 47 47 H 0.96999 * 120.00235 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0835 -0.8124 1.2001 5 7 3.4272 -1.2434 0.7729 6 6 4.4477 -1.5622 1.5934 7 8 5.5414 -1.8227 1.1305 8 6 4.2377 -1.5951 3.0534 9 6 3.0961 -2.1826 3.5963 10 7 2.9033 -2.2154 4.9010 11 6 3.7628 -1.7031 5.7587 12 6 4.9348 -1.0939 5.3122 13 7 5.9857 -0.4921 5.9248 14 6 6.8350 -0.0827 5.0278 15 7 6.3818 -0.3902 3.7802 16 6 7.0545 -0.0883 2.5143 17 6 5.1834 -1.0359 3.9274 18 6 3.4675 -1.2739 -0.6965 19 6 2.0862 -0.8075 -1.2025 20 1 1.4479 -1.6627 -1.4245 21 6 2.2349 0.0884 -2.4338 22 7 2.7614 -0.6999 -3.5506 23 6 2.9796 -0.1061 -4.7652 24 1 2.7630 0.9434 -4.8997 25 6 3.4790 -0.8529 -5.8232 26 7 3.7424 -2.1321 -5.6594 27 14 3.7759 -0.0430 -7.4801 28 1 3.4020 1.3921 -7.4037 29 1 5.2121 -0.1614 -7.8387 30 1 2.9502 -0.7156 -8.5150 31 1 -0.3633 -1.0254 0.0696 32 1 -0.3633 0.5728 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 1.4524 -1.6786 1.3982 35 1 2.1516 -0.1809 2.0859 36 1 2.3584 -2.6184 2.9388 37 1 3.5578 -1.7565 6.8178 38 1 7.7613 0.4302 5.2411 39 1 7.6317 -0.9555 2.1937 40 1 6.3100 0.1532 1.7557 41 1 7.7224 0.7622 2.6515 42 1 4.2426 -0.5994 -1.0602 43 1 3.6678 -2.2885 -1.0409 44 1 1.2618 0.4978 -2.7049 45 1 2.9223 0.9039 -2.2088 46 1 2.9556 -1.6426 -3.4299 47 1 4.0910 -2.6541 -6.3989 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501121447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:46 Heat of formation + Delta-G solvation = 47.068090 kcal Electronic energy + Delta-G solvation = -30062.865303 eV Core-core repulsion = 26052.975257 eV Total energy + Delta-G solvation = -4009.890046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.59732 -41.38058 -39.62579 -39.11294 -36.49828 -35.33320 -34.40082 -33.08386 -32.85033 -31.27805 -30.50001 -28.35651 -27.55477 -27.17847 -25.68134 -24.77906 -24.13381 -22.96846 -22.20235 -21.16604 -20.46882 -19.23901 -18.99078 -18.64373 -18.09761 -17.68833 -17.07014 -16.69317 -16.52682 -16.45244 -15.88993 -15.55772 -15.34663 -15.22860 -15.05671 -14.92779 -14.74635 -14.31135 -14.10391 -13.86614 -13.63558 -13.55649 -13.37434 -13.32196 -13.09725 -12.94380 -12.81403 -12.47691 -12.12288 -11.97427 -11.92212 -11.77931 -11.68053 -11.57990 -11.38976 -11.37524 -10.97102 -10.65447 -10.12724 -9.84135 -9.47049 -9.01428 -7.96422 -5.25369 -0.68521 0.18606 1.27748 1.46165 1.46195 1.46792 1.56778 1.64109 1.79700 2.54350 2.66581 2.96680 3.12142 3.33168 3.36955 3.39300 3.50551 3.62549 3.68668 3.74544 3.87746 4.02149 4.14096 4.20576 4.24723 4.28194 4.37968 4.45635 4.50607 4.54714 4.60510 4.64069 4.77450 4.83618 4.84270 4.90093 5.02359 5.10452 5.12104 5.16716 5.22951 5.29806 5.35319 5.48114 5.52373 5.90110 6.25643 6.30300 6.49495 6.78062 6.86096 7.32219 8.07625 8.29840 9.27209 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016097 B = 0.002636 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.036420 B =10617.981485 C =11689.152957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.086 0.914 4 C 0.101 3.899 5 N -0.605 5.605 6 C 0.573 3.427 7 O -0.572 6.572 8 C -0.181 4.181 9 C 0.142 3.858 10 N -0.493 5.493 11 C 0.197 3.803 12 C -0.027 4.027 13 N -0.501 5.501 14 C 0.277 3.723 15 N -0.484 5.484 16 C 0.086 3.914 17 C 0.094 3.906 18 C 0.125 3.875 19 C -0.089 4.089 20 H 0.090 0.910 21 C 0.165 3.835 22 N -0.746 5.746 23 C -0.242 4.242 24 H 0.077 0.923 25 C -0.076 4.076 26 N -0.969 5.969 27 Si 0.972 3.028 28 H -0.265 1.265 29 H -0.296 1.296 30 H -0.292 1.292 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.184 0.816 37 H 0.197 0.803 38 H 0.268 0.732 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.130 0.870 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.035 0.965 45 H 0.016 0.984 46 H 0.374 0.626 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 5.963 25.607 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.336 5.336 6 C 0.362 3.638 7 O -0.453 6.453 8 C -0.189 4.189 9 C -0.010 4.010 10 N -0.203 5.203 11 C 0.031 3.969 12 C -0.148 4.148 13 N -0.220 5.220 14 C -0.008 4.008 15 N -0.171 5.171 16 C -0.055 4.055 17 C -0.027 4.027 18 C 0.003 3.997 19 C -0.109 4.109 20 H 0.108 0.892 21 C 0.039 3.961 22 N -0.389 5.389 23 C -0.374 4.374 24 H 0.095 0.905 25 C -0.268 4.268 26 N -0.620 5.620 27 Si 0.801 3.199 28 H -0.189 1.189 29 H -0.223 1.223 30 H -0.219 1.219 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.201 0.799 37 H 0.213 0.787 38 H 0.284 0.716 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.205 0.795 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.013 5.698 26.281 26.911 hybrid contribution 1.463 -0.037 -2.778 3.140 sum 0.450 5.661 23.503 24.180 Atomic orbital electron populations 1.21690 0.91435 1.03229 1.02966 1.22377 0.97900 0.98728 0.91524 0.89596 1.22861 0.81425 0.99585 0.98195 1.48486 1.13228 1.65290 1.06597 1.17945 0.83048 0.76839 0.85964 1.90787 1.25300 1.51303 1.77882 1.19728 0.97981 1.09499 0.91717 1.23058 0.92922 0.93101 0.91918 1.67823 1.30462 1.18977 1.03005 1.22770 0.85138 0.87685 1.01273 1.20418 0.99018 1.06212 0.89142 1.70505 1.02680 1.17048 1.31805 1.26602 1.00456 0.96943 0.76831 1.45488 1.16178 1.45369 1.10068 1.22219 0.98077 1.03733 0.81485 1.18985 0.89094 0.98263 0.96311 1.21803 0.98606 1.00477 0.78836 1.22384 0.94354 0.99277 0.94850 0.89175 1.20764 0.96346 0.92935 0.86054 1.42591 1.78059 1.09869 1.08339 1.19653 1.34369 0.94427 0.88972 0.90539 1.25564 1.02889 0.96449 1.01937 1.69824 1.52445 1.07494 1.32259 0.85097 0.76760 0.78137 0.79915 1.18884 1.22340 1.21943 0.91383 0.90225 0.92332 0.88376 0.89141 0.79903 0.78653 0.71618 0.90786 0.92081 0.85178 0.93435 0.93197 0.94755 0.96609 0.79472 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.31 71.98 0.67 -1.43 16 2 C -0.09 -1.73 3.10 -9.32 -0.03 -1.76 16 3 H 0.09 1.78 8.05 -2.39 -0.02 1.76 16 4 C 0.10 1.87 4.85 86.93 0.42 2.29 16 5 N -0.60 -16.25 3.32 -815.09 -2.71 -18.96 16 6 C 0.57 17.02 6.59 86.70 0.57 17.60 16 7 O -0.57 -20.97 14.31 -4.00 -0.06 -21.03 16 8 C -0.18 -4.52 5.23 -20.02 -0.10 -4.62 16 9 C 0.14 2.94 9.51 84.96 0.81 3.74 16 10 N -0.49 -10.02 10.30 -193.92 -2.00 -12.02 16 11 C 0.20 3.74 11.25 84.99 0.96 4.70 16 12 C -0.03 -0.61 7.27 39.46 0.29 -0.32 16 13 N -0.50 -10.24 11.28 -191.89 -2.16 -12.41 16 14 C 0.28 4.15 12.50 179.98 2.25 6.40 16 15 N -0.48 -9.73 3.18 -542.64 -1.73 -11.46 16 16 C 0.09 1.57 9.48 127.77 1.21 2.78 16 17 C 0.09 2.30 6.78 39.50 0.27 2.57 16 18 C 0.13 4.12 6.15 86.73 0.53 4.66 16 19 C -0.09 -2.59 2.48 -9.61 -0.02 -2.61 16 20 H 0.09 2.62 8.04 -2.38 -0.02 2.60 16 21 C 0.17 6.20 5.58 86.38 0.48 6.68 16 22 N -0.75 -37.14 5.45 -343.47 -1.87 -39.01 16 23 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 24 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 26 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 27 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 28 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 31 H 0.07 0.97 8.07 -2.38 -0.02 0.95 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.41 7.05 -2.39 -0.02 1.40 16 35 H 0.09 1.46 7.48 -2.39 -0.02 1.44 16 36 H 0.18 3.01 6.50 -2.91 -0.02 2.99 16 37 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.27 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.07 1.56 7.86 -2.39 -0.02 1.55 16 40 H 0.06 1.48 6.30 -2.39 -0.02 1.46 16 41 H 0.13 1.18 8.13 -2.38 -0.02 1.16 16 42 H 0.05 1.83 7.77 -2.39 -0.02 1.81 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.02 0.62 8.06 -2.38 -0.02 0.60 16 46 H 0.37 19.96 7.52 -92.71 -0.70 19.27 16 47 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -77.70 383.00 1.69 -76.00 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.30 Total: 25.92 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 9.61 Total: 24.19 kcal Atomic # 7 Polarization: -143.08 SS G_CDS: -10.19 Total: -153.27 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.70 1.69 -76.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501121447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.072 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds