Wall clock time and date at job start Wed Apr 1 2020 02:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47115 * 2 1 4 4 N 1.46500 * 109.46863 * 239.99533 * 2 1 3 5 5 C 1.36935 * 119.99950 * 85.00506 * 4 2 1 6 6 H 1.07998 * 119.99872 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99806 * 180.27254 * 5 4 2 8 8 N 1.31621 * 119.99939 * 359.72317 * 7 5 4 9 9 Si 1.86792 * 119.99796 * 179.72478 * 7 5 4 10 10 H 1.48505 * 109.47296 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47213 * 210.00178 * 9 7 5 12 12 H 1.48504 * 109.47439 * 329.99881 * 9 7 5 13 13 C 1.53001 * 109.46788 * 119.99783 * 2 1 3 14 14 H 1.09008 * 109.58486 * 302.90220 * 13 2 1 15 15 C 1.53190 * 109.58697 * 63.18424 * 13 2 1 16 16 C 1.53079 * 109.29208 * 174.28048 * 15 13 2 17 17 C 1.53041 * 109.65835 * 298.84549 * 16 15 13 18 18 C 1.53196 * 109.31187 * 61.30350 * 17 16 15 19 19 N 1.46921 * 109.58556 * 182.62072 * 13 2 1 20 20 C 1.34773 * 120.63097 * 6.58054 * 19 13 2 21 21 O 1.21573 * 120.00343 * 4.08942 * 20 19 13 22 22 C 1.47696 * 120.00118 * 184.08814 * 20 19 13 23 23 C 1.39977 * 120.38175 * 325.14260 * 22 20 19 24 24 N 1.31395 * 121.15942 * 179.65960 * 23 22 20 25 25 C 1.32540 * 121.78609 * 0.66084 * 24 23 22 26 26 N 1.37579 * 133.56419 * 179.67447 * 25 24 23 27 27 H 0.96999 * 126.23839 * 359.95714 * 26 25 24 28 28 C 1.36172 * 107.52844 * 179.97438 * 26 25 24 29 29 N 1.30055 * 110.10787 * 359.97438 * 28 26 25 30 30 C 1.35777 * 109.43762 * 0.02562 * 29 28 26 31 31 C 1.39490 * 133.74687 * 180.02562 * 30 29 28 32 32 H 1.09001 * 109.47408 * 294.93082 * 1 2 3 33 33 H 1.08997 * 109.46837 * 54.92591 * 1 2 3 34 34 H 1.08997 * 109.47061 * 174.92581 * 1 2 3 35 35 H 0.97001 * 119.99860 * 264.99992 * 4 2 1 36 36 H 0.96993 * 119.99571 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.50343 * 294.37154 * 15 13 2 38 38 H 1.08996 * 109.49717 * 54.47588 * 15 13 2 39 39 H 1.09007 * 109.45204 * 178.76278 * 16 15 13 40 40 H 1.08996 * 109.33868 * 58.86616 * 16 15 13 41 41 H 1.08998 * 109.49799 * 301.35445 * 17 16 15 42 42 H 1.09000 * 109.49470 * 181.25006 * 17 16 15 43 43 H 1.08992 * 109.58736 * 185.57189 * 18 17 16 44 44 H 1.09000 * 109.70351 * 65.21553 * 18 17 16 45 45 H 1.08001 * 119.42422 * 359.97438 * 23 22 20 46 46 H 1.07993 * 124.94455 * 180.02562 * 28 26 25 47 47 H 1.08000 * 120.97102 * 359.97100 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4243 7 6 2.6065 -0.6636 -3.5105 8 7 2.9195 -1.9406 -3.4513 9 14 2.7776 0.2663 -5.1214 10 1 4.1397 0.8510 -5.2132 11 1 2.5617 -0.6663 -6.2567 12 1 1.7676 1.3537 -5.1752 13 6 2.0400 -0.7212 1.2493 14 1 1.6358 -0.2396 2.1398 15 6 1.5973 -2.1873 1.2126 16 6 2.2287 -2.9359 2.3891 17 6 3.7538 -2.8855 2.2726 18 6 4.2179 -1.4264 2.3231 19 7 3.5078 -0.6682 1.2840 20 6 4.1901 0.0618 0.3795 21 8 3.5902 0.7433 -0.4289 22 6 5.6668 0.0339 0.3705 23 6 6.3801 -0.0778 1.5697 24 7 7.6936 -0.1108 1.5789 25 6 8.4019 -0.0274 0.4617 26 7 9.7510 -0.0304 0.1920 27 1 10.4659 -0.1006 0.8437 28 6 9.8998 0.0836 -1.1568 29 7 8.7349 0.1556 -1.7306 30 6 7.7614 0.0929 -0.7863 31 6 6.3676 0.1235 -0.8343 32 1 -0.3634 0.4332 0.9319 33 1 -0.3633 0.5905 -0.8410 34 1 -0.3633 -1.0236 -0.0909 35 1 2.2490 -1.6319 -1.1525 36 1 3.2393 -2.3988 -4.2441 37 1 0.5111 -2.2413 1.2849 38 1 1.9232 -2.6424 0.2773 39 1 1.8978 -3.9745 2.3782 40 1 1.9202 -2.4663 3.3231 41 1 4.0614 -3.3325 1.3273 42 1 4.2003 -3.4380 3.0993 43 1 5.2915 -1.3779 2.1416 44 1 3.9933 -1.0030 3.3021 45 1 5.8413 -0.1432 2.5034 46 1 10.8471 0.1096 -1.6746 47 1 5.8458 0.2147 -1.7754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566530419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:09 Heat of formation + Delta-G solvation = 126.187042 kcal Electronic energy + Delta-G solvation = -31817.761614 eV Core-core repulsion = 27811.302423 eV Total energy + Delta-G solvation = -4006.459191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34984 -40.34939 -38.19886 -36.77011 -35.15350 -33.59504 -32.58679 -32.14571 -31.08922 -30.03087 -29.33770 -27.98190 -25.45436 -24.51530 -23.80630 -23.28010 -22.83362 -21.73881 -20.70420 -20.02220 -18.81045 -18.56241 -17.76189 -16.91982 -16.21372 -15.92120 -15.70975 -15.30299 -14.72293 -14.60010 -14.32560 -14.22230 -13.88783 -13.74470 -13.49673 -13.06477 -12.84917 -12.77092 -12.69040 -12.47113 -12.16534 -12.01745 -11.74195 -11.35485 -11.10183 -11.08198 -11.03491 -10.71036 -10.61185 -10.58253 -10.47960 -10.26267 -10.05475 -9.73665 -9.34612 -9.29438 -8.85172 -8.62394 -8.49965 -8.16181 -7.93495 -6.55524 -5.46622 -2.68661 0.81143 1.04821 2.45869 2.71645 3.27123 3.46451 3.62140 3.67866 3.68050 4.05002 4.08977 4.36802 4.64931 4.82469 4.87522 4.90523 4.99252 5.08000 5.12143 5.14792 5.37159 5.44892 5.52242 5.60616 5.71441 5.76651 5.81714 5.85978 5.93413 6.05590 6.11916 6.18884 6.21075 6.30902 6.33425 6.35821 6.49153 6.50899 6.57171 6.64679 6.91597 6.99270 7.05852 7.12792 7.45388 7.65097 7.76840 7.99563 8.04666 8.72016 8.98221 9.83755 10.40653 10.77006 11.77389 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.005575 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.457529 B = 5020.769161 C = 7422.141772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.165 3.835 3 H 0.086 0.914 4 N -0.706 5.706 5 C -0.177 4.177 6 H 0.065 0.935 7 C -0.029 4.029 8 N -0.946 5.946 9 Si 0.895 3.105 10 H -0.294 1.294 11 H -0.298 1.298 12 H -0.287 1.287 13 C 0.149 3.851 14 H 0.064 0.936 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.082 3.918 19 N -0.605 5.605 20 C 0.553 3.447 21 O -0.446 6.446 22 C -0.181 4.181 23 C 0.149 3.851 24 N -0.493 5.493 25 C 0.246 3.754 26 N -0.592 5.592 27 H 0.426 0.574 28 C 0.266 3.734 29 N -0.475 5.475 30 C -0.005 4.005 31 C 0.051 3.949 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.378 0.622 36 H 0.247 0.753 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.183 0.817 46 H 0.224 0.776 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.392 0.250 16.279 19.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.055 3.945 3 H 0.104 0.896 4 N -0.348 5.348 5 C -0.309 4.309 6 H 0.083 0.917 7 C -0.222 4.222 8 N -0.598 5.598 9 Si 0.728 3.272 10 H -0.222 1.222 11 H -0.225 1.225 12 H -0.213 1.213 13 C 0.045 3.955 14 H 0.082 0.918 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.173 4.173 18 C -0.041 4.041 19 N -0.342 5.342 20 C 0.338 3.662 21 O -0.315 6.315 22 C -0.189 4.189 23 C -0.018 4.018 24 N -0.206 5.206 25 C 0.010 3.990 26 N -0.207 5.207 27 H 0.266 0.734 28 C -0.023 4.023 29 N -0.194 5.194 30 C -0.124 4.124 31 C 0.024 3.976 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.213 0.787 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.200 0.800 46 H 0.240 0.760 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.354 0.804 15.481 18.642 hybrid contribution 0.490 -0.215 -0.600 0.804 sum 10.844 0.589 14.881 18.423 Atomic orbital electron populations 1.22590 1.00194 1.00820 0.99372 1.20762 0.90257 0.98149 0.85283 0.89613 1.42412 1.77498 1.09688 1.05230 1.19091 1.32380 0.93146 0.86312 0.91670 1.24550 1.04194 0.95951 0.97507 1.69637 1.53561 1.08483 1.28101 0.86324 0.77678 0.78473 0.84689 1.22193 1.22461 1.21278 1.21584 0.78330 0.95964 0.99580 0.91843 1.21996 1.00309 0.95565 0.99274 1.21510 0.95037 1.00291 0.98565 1.21908 0.96618 0.96273 1.02528 1.22443 0.98366 0.92041 0.91253 1.47678 1.06395 1.48914 1.31170 1.17705 0.85275 0.82053 0.81137 1.91007 1.66892 1.38701 1.34943 1.20892 0.96039 1.07961 0.94055 1.23255 0.87466 0.92958 0.98110 1.66429 1.07998 1.18076 1.28096 1.19104 0.85584 1.02248 0.92080 1.42803 1.05421 1.62834 1.09640 0.73420 1.25477 0.99359 0.98440 0.78987 1.70510 0.97458 1.19867 1.31530 1.19581 0.94457 1.08361 0.89999 1.21020 0.89497 0.87562 0.99548 0.94932 0.92915 0.93628 0.78697 0.94271 0.91032 0.90265 0.92206 0.92405 0.91164 0.91457 0.88313 0.91583 0.80049 0.75974 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.08 37.16 0.34 -2.77 16 2 C 0.17 3.34 1.89 -67.93 -0.13 3.21 16 3 H 0.09 1.92 5.88 -52.24 -0.31 1.61 16 4 N -0.71 -17.52 3.50 -53.42 -0.19 -17.71 16 5 C -0.18 -5.03 8.07 -15.06 -0.12 -5.15 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.03 -0.86 5.50 -17.43 -0.10 -0.95 16 8 N -0.95 -29.30 13.06 55.49 0.72 -28.58 16 9 Si 0.90 23.95 29.55 -169.99 -5.02 18.92 16 10 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 11 H -0.30 -8.05 7.11 56.52 0.40 -7.64 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 13 C 0.15 2.40 2.73 -67.60 -0.18 2.22 16 14 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 15 C -0.13 -2.02 4.83 -26.59 -0.13 -2.15 16 16 C -0.12 -1.39 5.88 -26.67 -0.16 -1.54 16 17 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 18 C 0.08 0.97 5.01 -3.71 -0.02 0.96 16 19 N -0.61 -9.58 2.97 -166.38 -0.49 -10.08 16 20 C 0.55 10.50 6.92 -12.40 -0.09 10.42 16 21 O -0.45 -10.27 9.90 5.30 0.05 -10.22 16 22 C -0.18 -3.11 5.52 -104.85 -0.58 -3.69 16 23 C 0.15 2.07 8.60 -17.09 -0.15 1.92 16 24 N -0.49 -6.99 10.37 -12.46 -0.13 -7.11 16 25 C 0.25 3.56 8.45 -155.64 -1.31 2.24 16 26 N -0.59 -5.89 6.20 -13.22 -0.08 -5.97 16 27 H 0.43 2.56 8.96 -40.82 -0.37 2.20 16 28 C 0.27 2.70 12.97 -89.70 -1.16 1.54 16 29 N -0.47 -7.54 11.29 -12.02 -0.14 -7.68 16 30 C 0.00 -0.08 7.23 -84.69 -0.61 -0.69 16 31 C 0.05 0.98 9.79 -38.58 -0.38 0.60 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 35 H 0.38 10.02 5.81 -40.82 -0.24 9.78 16 36 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 38 H 0.08 1.49 6.19 -51.93 -0.32 1.17 16 39 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 1.15 3.48 -53.06 -0.18 0.96 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.18 1.95 5.40 -52.49 -0.28 1.67 16 46 H 0.22 0.99 8.06 -52.49 -0.42 0.56 16 47 H 0.16 3.53 8.04 -52.49 -0.42 3.10 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -36.38 363.63 -10.92 -47.31 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.19 Total: 11.23 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -4.94 Total: 4.41 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -0.30 Total: -77.13 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.05 Total: -10.22 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.38 -10.92 -47.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566530419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.494 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds