Wall clock time and date at job start Wed Apr 1 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47115 * 2 1 4 4 N 1.46500 * 109.46863 * 239.99533 * 2 1 3 5 5 C 1.36935 * 119.99950 * 85.00506 * 4 2 1 6 6 H 1.07998 * 119.99872 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99806 * 180.27254 * 5 4 2 8 8 N 1.31621 * 119.99939 * 359.72317 * 7 5 4 9 9 Si 1.86792 * 119.99796 * 179.72478 * 7 5 4 10 10 H 1.48505 * 109.47296 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47213 * 210.00178 * 9 7 5 12 12 H 1.48504 * 109.47439 * 329.99881 * 9 7 5 13 13 C 1.53001 * 109.46788 * 119.99783 * 2 1 3 14 14 H 1.09008 * 109.58486 * 302.90220 * 13 2 1 15 15 C 1.53190 * 109.58697 * 63.18424 * 13 2 1 16 16 C 1.53079 * 109.29208 * 174.28048 * 15 13 2 17 17 C 1.53041 * 109.65835 * 298.84549 * 16 15 13 18 18 C 1.53196 * 109.31187 * 61.30350 * 17 16 15 19 19 N 1.46921 * 109.58556 * 182.62072 * 13 2 1 20 20 C 1.34773 * 120.63097 * 6.58054 * 19 13 2 21 21 O 1.21573 * 120.00343 * 4.08942 * 20 19 13 22 22 C 1.47696 * 120.00118 * 184.08814 * 20 19 13 23 23 C 1.39977 * 120.38175 * 325.14260 * 22 20 19 24 24 N 1.31395 * 121.15942 * 179.65960 * 23 22 20 25 25 C 1.32540 * 121.78609 * 0.66084 * 24 23 22 26 26 N 1.37579 * 133.56419 * 179.67447 * 25 24 23 27 27 H 0.96999 * 126.23839 * 359.95714 * 26 25 24 28 28 C 1.36172 * 107.52844 * 179.97438 * 26 25 24 29 29 N 1.30055 * 110.10787 * 359.97438 * 28 26 25 30 30 C 1.35777 * 109.43762 * 0.02562 * 29 28 26 31 31 C 1.39490 * 133.74687 * 180.02562 * 30 29 28 32 32 H 1.09001 * 109.47408 * 294.93082 * 1 2 3 33 33 H 1.08997 * 109.46837 * 54.92591 * 1 2 3 34 34 H 1.08997 * 109.47061 * 174.92581 * 1 2 3 35 35 H 0.97001 * 119.99860 * 264.99992 * 4 2 1 36 36 H 0.96993 * 119.99571 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.50343 * 294.37154 * 15 13 2 38 38 H 1.08996 * 109.49717 * 54.47588 * 15 13 2 39 39 H 1.09007 * 109.45204 * 178.76278 * 16 15 13 40 40 H 1.08996 * 109.33868 * 58.86616 * 16 15 13 41 41 H 1.08998 * 109.49799 * 301.35445 * 17 16 15 42 42 H 1.09000 * 109.49470 * 181.25006 * 17 16 15 43 43 H 1.08992 * 109.58736 * 185.57189 * 18 17 16 44 44 H 1.09000 * 109.70351 * 65.21553 * 18 17 16 45 45 H 1.08001 * 119.42422 * 359.97438 * 23 22 20 46 46 H 1.07993 * 124.94455 * 180.02562 * 28 26 25 47 47 H 1.08000 * 120.97102 * 359.97100 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4243 7 6 2.6065 -0.6636 -3.5105 8 7 2.9195 -1.9406 -3.4513 9 14 2.7776 0.2663 -5.1214 10 1 4.1397 0.8510 -5.2132 11 1 2.5617 -0.6663 -6.2567 12 1 1.7676 1.3537 -5.1752 13 6 2.0400 -0.7212 1.2493 14 1 1.6358 -0.2396 2.1398 15 6 1.5973 -2.1873 1.2126 16 6 2.2287 -2.9359 2.3891 17 6 3.7538 -2.8855 2.2726 18 6 4.2179 -1.4264 2.3231 19 7 3.5078 -0.6682 1.2840 20 6 4.1901 0.0618 0.3795 21 8 3.5902 0.7433 -0.4289 22 6 5.6668 0.0339 0.3705 23 6 6.3801 -0.0778 1.5697 24 7 7.6936 -0.1108 1.5789 25 6 8.4019 -0.0274 0.4617 26 7 9.7510 -0.0304 0.1920 27 1 10.4659 -0.1006 0.8437 28 6 9.8998 0.0836 -1.1568 29 7 8.7349 0.1556 -1.7306 30 6 7.7614 0.0929 -0.7863 31 6 6.3676 0.1235 -0.8343 32 1 -0.3634 0.4332 0.9319 33 1 -0.3633 0.5905 -0.8410 34 1 -0.3633 -1.0236 -0.0909 35 1 2.2490 -1.6319 -1.1525 36 1 3.2393 -2.3988 -4.2441 37 1 0.5111 -2.2413 1.2849 38 1 1.9232 -2.6424 0.2773 39 1 1.8978 -3.9745 2.3782 40 1 1.9202 -2.4663 3.3231 41 1 4.0614 -3.3325 1.3273 42 1 4.2003 -3.4380 3.0993 43 1 5.2915 -1.3779 2.1416 44 1 3.9933 -1.0030 3.3021 45 1 5.8413 -0.1432 2.5034 46 1 10.8471 0.1096 -1.6746 47 1 5.8458 0.2147 -1.7754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566530419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:08 Heat of formation + Delta-G solvation = 100.562160 kcal Electronic energy + Delta-G solvation = -31818.872792 eV Core-core repulsion = 27811.302423 eV Total energy + Delta-G solvation = -4007.570369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43111 -41.67403 -39.39155 -38.11507 -36.79211 -34.73983 -34.18965 -33.69638 -32.28308 -31.49602 -30.70100 -29.62195 -26.73954 -25.77952 -25.59493 -24.41472 -24.31159 -22.79657 -21.86214 -21.48325 -20.06774 -19.67462 -19.13765 -18.84553 -17.42689 -17.14750 -16.81464 -16.72362 -16.25383 -16.01374 -15.68731 -15.60368 -15.26834 -15.17233 -14.82297 -14.45465 -14.34699 -14.00466 -13.98512 -13.80656 -13.75414 -13.35635 -13.13245 -13.03142 -12.83127 -12.60440 -12.28080 -12.26327 -12.16281 -12.12741 -11.84566 -11.66331 -11.52513 -11.30529 -11.18526 -10.83499 -10.53357 -9.97649 -9.72416 -9.58675 -9.33018 -8.62042 -7.77425 -4.95153 -0.35480 -0.20572 1.39481 1.43885 1.48895 1.52021 1.72534 1.92086 2.21219 2.65222 2.76698 3.09113 3.35066 3.55658 3.57971 3.63101 3.73428 3.92872 3.99405 4.09812 4.14945 4.20556 4.31487 4.33370 4.40879 4.47641 4.67166 4.69716 4.72657 4.86903 4.92476 4.93756 4.95818 5.01240 5.07801 5.14115 5.19319 5.31849 5.34818 5.36052 5.51684 5.59486 5.63801 5.69965 5.98044 6.14503 6.46342 6.61361 6.65959 6.73209 7.50214 7.58729 8.33026 8.55958 9.47228 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008728 B = 0.005575 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3207.457529 B = 5020.769161 C = 7422.141772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.063 0.937 4 N -0.707 5.707 5 C -0.154 4.154 6 H 0.053 0.947 7 C -0.092 4.092 8 N -0.978 5.978 9 Si 0.945 3.055 10 H -0.305 1.305 11 H -0.299 1.299 12 H -0.276 1.276 13 C 0.152 3.848 14 H 0.103 0.897 15 C -0.128 4.128 16 C -0.109 4.109 17 C -0.133 4.133 18 C 0.076 3.924 19 N -0.601 5.601 20 C 0.546 3.454 21 O -0.505 6.505 22 C -0.188 4.188 23 C 0.161 3.839 24 N -0.479 5.479 25 C 0.244 3.756 26 N -0.570 5.570 27 H 0.450 0.550 28 C 0.304 3.696 29 N -0.541 5.541 30 C -0.027 4.027 31 C 0.013 3.987 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.044 0.956 35 H 0.368 0.632 36 H 0.238 0.762 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.222 0.778 46 H 0.285 0.715 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 0.001 20.718 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.081 0.919 4 N -0.347 5.347 5 C -0.287 4.287 6 H 0.071 0.929 7 C -0.281 4.281 8 N -0.633 5.633 9 Si 0.779 3.221 10 H -0.233 1.233 11 H -0.226 1.226 12 H -0.202 1.202 13 C 0.049 3.951 14 H 0.121 0.879 15 C -0.167 4.167 16 C -0.146 4.146 17 C -0.171 4.171 18 C -0.045 4.045 19 N -0.335 5.335 20 C 0.333 3.667 21 O -0.379 6.379 22 C -0.196 4.196 23 C -0.006 4.006 24 N -0.192 5.192 25 C 0.007 3.993 26 N -0.187 5.187 27 H 0.294 0.706 28 C 0.017 3.983 29 N -0.261 5.261 30 C -0.146 4.146 31 C -0.015 4.015 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.201 0.799 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.051 0.949 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.238 0.762 46 H 0.300 0.700 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.062 0.558 20.018 23.378 hybrid contribution 0.081 -0.089 -1.892 1.896 sum 12.143 0.470 18.126 21.823 Atomic orbital electron populations 1.22415 0.98360 1.00654 1.00455 1.20893 0.91351 0.97211 0.85582 0.91908 1.42486 1.77300 1.09098 1.05835 1.19201 1.29502 0.92441 0.87594 0.92932 1.25089 1.06049 0.96816 1.00163 1.69771 1.55947 1.09597 1.27999 0.85484 0.77093 0.77635 0.81931 1.23348 1.22565 1.20159 1.21574 0.78640 0.96429 0.98492 0.87941 1.21928 1.01098 0.94826 0.98800 1.21493 0.94626 1.00515 0.98015 1.21912 0.96891 0.96227 1.02077 1.22812 0.98119 0.91895 0.91724 1.47789 1.06504 1.48084 1.31144 1.18105 0.86119 0.81615 0.80896 1.90967 1.68121 1.41461 1.37392 1.20827 0.95237 1.08767 0.94766 1.23709 0.87393 0.91660 0.97852 1.66606 1.07836 1.17419 1.27316 1.19292 0.87293 1.01765 0.90993 1.42820 1.04140 1.61431 1.10264 0.70601 1.26677 0.99661 0.93198 0.78807 1.70484 0.99097 1.23621 1.32907 1.19635 0.93953 1.08936 0.92050 1.20718 0.91082 0.91326 0.98366 0.90843 0.95452 0.93673 0.79881 0.95288 0.90083 0.95003 0.91452 0.89084 0.94895 0.87763 0.88115 0.86922 0.76176 0.70028 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.77 9.08 71.98 0.65 -5.12 16 2 C 0.16 6.53 1.89 44.99 0.08 6.61 16 3 H 0.06 2.94 5.88 -7.32 -0.04 2.90 16 4 N -0.71 -37.22 3.50 -322.93 -1.13 -38.35 16 5 C -0.15 -9.31 8.07 84.03 0.68 -8.63 16 6 H 0.05 3.26 7.83 -2.91 -0.02 3.24 16 7 C -0.09 -5.78 5.50 84.86 0.47 -5.32 16 8 N -0.98 -64.64 13.06 21.65 0.28 -64.36 16 9 Si 0.95 52.41 29.55 68.60 2.03 54.44 16 10 H -0.30 -17.21 7.11 99.48 0.71 -16.50 16 11 H -0.30 -16.45 7.11 99.48 0.71 -15.74 16 12 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 13 C 0.15 4.69 2.73 44.98 0.12 4.81 16 14 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 15 C -0.13 -3.72 4.83 30.68 0.15 -3.58 16 16 C -0.11 -2.21 5.88 30.63 0.18 -2.03 16 17 C -0.13 -2.73 6.08 30.67 0.19 -2.54 16 18 C 0.08 1.54 5.01 86.36 0.43 1.97 16 19 N -0.60 -18.53 2.97 -798.58 -2.37 -20.90 16 20 C 0.55 21.74 6.92 86.74 0.60 22.34 16 21 O -0.51 -25.14 9.90 -3.95 -0.04 -25.18 16 22 C -0.19 -6.78 5.52 -20.01 -0.11 -6.89 16 23 C 0.16 4.24 8.60 85.18 0.73 4.97 16 24 N -0.48 -12.55 10.37 -193.33 -2.00 -14.55 16 25 C 0.24 6.75 8.45 133.91 1.13 7.88 16 26 N -0.57 -9.54 6.20 -195.74 -1.21 -10.75 16 27 H 0.45 3.41 8.96 -92.71 -0.83 2.58 16 28 C 0.30 5.34 12.97 180.03 2.33 7.68 16 29 N -0.54 -17.43 11.29 -191.94 -2.17 -19.60 16 30 C -0.03 -0.97 7.23 39.46 0.29 -0.68 16 31 C 0.01 0.55 9.79 22.92 0.22 0.78 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 1.63 6.92 -2.39 -0.02 1.61 16 35 H 0.37 20.84 5.81 -92.71 -0.54 20.30 16 36 H 0.24 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.08 2.18 6.94 -2.39 -0.02 2.16 16 38 H 0.03 1.23 6.19 -2.39 -0.01 1.22 16 39 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.10 2.03 3.48 -3.45 -0.01 2.02 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.22 3.90 5.40 -2.91 -0.02 3.89 16 46 H 0.28 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.10 5.42 8.04 -2.91 -0.02 5.40 16 Total: -1.00 -91.30 363.63 1.17 -90.13 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.36 Total: 26.86 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 8.15 Total: 22.25 kcal Atomic # 7 Polarization: -159.90 SS G_CDS: -8.60 Total: -168.50 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.03 Total: 54.44 kcal Total: -91.30 1.17 -90.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566530419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.688 kcal (2) G-P(sol) polarization free energy of solvation -91.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds