Wall clock time and date at job start Wed Apr 1 2020 02:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.64096 * 2 1 4 4 C 1.54326 * 110.71911 * 123.14144 * 2 1 3 5 5 N 1.47022 * 107.26845 * 140.55804 * 4 2 1 6 6 C 1.34779 * 125.64882 * 181.02611 * 5 4 2 7 7 O 1.21273 * 120.00386 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99595 * 0.02562 * 6 5 4 9 9 N 1.46498 * 109.47124 * 180.02562 * 8 6 5 10 10 N 1.39839 * 125.38833 * 270.29141 * 9 8 6 11 11 C 1.30232 * 110.09619 * 180.15053 * 10 9 8 12 12 C 1.45858 * 107.65458 * 359.60530 * 11 10 9 13 13 C 1.40001 * 134.25984 * 180.23893 * 12 11 10 14 14 C 1.37018 * 118.15277 * 180.02562 * 13 12 11 15 15 C 1.38803 * 119.65301 * 359.92361 * 14 13 12 16 16 N 1.31514 * 121.58476 * 0.06364 * 15 14 13 17 17 C 1.32765 * 121.47200 * 359.97438 * 16 15 14 18 18 C 1.47425 * 108.70469 * 1.28673 * 5 4 2 19 19 C 1.55126 * 104.72419 * 335.55307 * 18 5 4 20 20 H 1.08997 * 111.22693 * 279.17896 * 19 18 5 21 21 C 1.52998 * 110.90924 * 155.27180 * 19 18 5 22 22 N 1.46505 * 109.47036 * 72.97587 * 21 19 18 23 23 C 1.36935 * 120.00140 * 180.02562 * 22 21 19 24 24 H 1.07994 * 119.99998 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99926 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00237 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00093 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46908 * 89.99958 * 27 25 23 29 29 H 1.48498 * 109.47281 * 210.00043 * 27 25 23 30 30 H 1.48501 * 109.47050 * 330.00043 * 27 25 23 31 31 H 1.08998 * 109.47367 * 298.31358 * 1 2 3 32 32 H 1.09005 * 109.46971 * 58.31364 * 1 2 3 33 33 H 1.09002 * 109.47448 * 178.30679 * 1 2 3 34 34 H 1.08999 * 109.87830 * 21.14286 * 4 2 1 35 35 H 1.08993 * 109.88289 * 259.97243 * 4 2 1 36 36 H 1.08993 * 109.47316 * 60.00034 * 8 6 5 37 37 H 1.09005 * 109.46975 * 300.00094 * 8 6 5 38 38 H 1.08002 * 126.17589 * 179.87973 * 11 10 9 39 39 H 1.07998 * 120.91975 * 359.97438 * 13 12 11 40 40 H 1.08007 * 120.17259 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.21075 * 180.02562 * 15 14 13 42 42 H 1.09001 * 110.36567 * 94.48494 * 18 5 4 43 43 H 1.09000 * 110.36999 * 216.80531 * 18 5 4 44 44 H 1.08994 * 109.47254 * 192.97827 * 21 19 18 45 45 H 1.08999 * 109.47242 * 312.98244 * 21 19 18 46 46 H 0.97006 * 119.99861 * 0.02562 * 22 21 19 47 47 H 0.97000 * 119.99914 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2444 -1.5494 0.7416 6 6 3.9923 -2.3811 1.4937 7 8 4.9383 -2.9585 1.0014 8 6 3.6528 -2.5935 2.9466 9 7 4.6076 -3.5335 3.5388 10 7 4.4590 -4.9235 3.5753 11 6 5.4800 -5.4671 4.1736 12 6 6.3873 -4.3937 4.5635 13 6 7.6235 -4.3490 5.2191 14 6 8.2039 -3.1245 5.4219 15 6 7.5608 -1.9777 4.9770 16 7 6.3997 -2.0336 4.3621 17 6 5.7890 -3.1910 4.1381 18 6 3.4665 -1.2467 -0.6840 19 6 2.0790 -0.7975 -1.2125 20 1 1.4448 -1.6556 -1.4351 21 6 2.2278 0.1039 -2.4397 22 7 2.6329 -0.7039 -3.5928 23 6 2.8291 -0.1092 -4.8105 24 1 2.6848 0.9554 -4.9210 25 6 3.2125 -0.8747 -5.9031 26 7 3.3879 -2.1723 -5.7686 27 14 3.4795 -0.0635 -7.5645 28 1 4.8959 0.3666 -7.6833 29 1 3.1641 -1.0323 -8.6448 30 1 2.5909 1.1200 -7.6860 31 1 -0.3634 0.4874 0.9047 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3634 -1.0272 -0.0304 34 1 1.3128 -1.4732 1.5800 35 1 2.3740 -0.0991 1.9979 36 1 2.6445 -2.9992 3.0286 37 1 3.7054 -1.6414 3.4749 38 1 5.6303 -6.5227 4.3457 39 1 8.1058 -5.2546 5.5564 40 1 9.1571 -3.0521 5.9246 41 1 8.0249 -1.0163 5.1403 42 1 4.1947 -0.4428 -0.7921 43 1 3.8031 -2.1381 -1.2132 44 1 1.2749 0.5884 -2.6524 45 1 2.9854 0.8626 -2.2436 46 1 2.7621 -1.6602 -3.4936 47 1 3.6554 -2.7073 -6.5322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569843261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:55 Heat of formation + Delta-G solvation = 88.517237 kcal Electronic energy + Delta-G solvation = -29204.306323 eV Core-core repulsion = 25196.213646 eV Total energy + Delta-G solvation = -4008.092676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80298 -40.10943 -38.44025 -37.77896 -34.68996 -34.05440 -32.96240 -32.02700 -31.39427 -30.37123 -29.39424 -27.70352 -26.37632 -25.20562 -24.22125 -23.20245 -22.86631 -21.51323 -21.06545 -20.02447 -19.44817 -17.93422 -17.47043 -17.31666 -16.95042 -16.43273 -16.14783 -15.61373 -15.26269 -14.77891 -14.52931 -14.32495 -14.11557 -14.03127 -13.67887 -13.52721 -13.18846 -13.16962 -12.98989 -12.84673 -12.74997 -12.47703 -12.25519 -12.11164 -12.01432 -11.36042 -11.23332 -11.09704 -10.97857 -10.85999 -10.62382 -10.48047 -10.37768 -10.02679 -9.94114 -9.73153 -9.66186 -9.23527 -8.86993 -8.61472 -8.54381 -6.91931 -5.74613 -3.04197 0.52906 1.04142 1.77467 2.22449 2.54620 2.97478 3.45048 3.49609 3.51697 3.54330 3.90230 4.01863 4.27139 4.38070 4.48190 4.50664 4.57709 4.69853 4.77435 4.79389 4.86325 4.91259 5.09149 5.24464 5.25657 5.34549 5.36088 5.46664 5.49199 5.58912 5.71216 5.79221 5.83494 5.96598 5.97855 6.03200 6.10886 6.17648 6.21376 6.26022 6.38029 6.40442 6.53700 6.69616 6.82101 7.19794 7.48353 7.66813 7.70764 8.10260 8.43421 9.54614 10.11572 10.45738 11.48041 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.002292 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.448003 B =12213.139358 C =13159.304568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.088 0.912 4 C 0.100 3.900 5 N -0.616 5.616 6 C 0.510 3.490 7 O -0.522 6.522 8 C 0.131 3.869 9 N -0.377 5.377 10 N -0.226 5.226 11 C 0.085 3.915 12 C -0.228 4.228 13 C 0.006 3.994 14 C -0.220 4.220 15 C 0.169 3.831 16 N -0.502 5.502 17 C 0.325 3.675 18 C 0.117 3.883 19 C -0.100 4.100 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.733 5.733 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.203 0.797 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.025 0.975 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 -1.120 28.914 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.023 4.023 5 N -0.351 5.351 6 C 0.296 3.704 7 O -0.397 6.397 8 C 0.005 3.995 9 N -0.166 5.166 10 N -0.037 5.037 11 C -0.114 4.114 12 C -0.238 4.238 13 C -0.022 4.022 14 C -0.242 4.242 15 C 0.000 4.000 16 N -0.216 5.216 17 C 0.086 3.914 18 C -0.004 4.004 19 C -0.119 4.119 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.377 5.377 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.219 0.781 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.723 -0.751 27.581 27.601 hybrid contribution 1.354 -0.430 -0.429 1.484 sum 2.077 -1.181 27.152 27.257 Atomic orbital electron populations 1.21748 0.93648 1.02275 1.02092 1.22212 0.96428 0.99552 0.93474 0.89356 1.22237 0.87611 0.94752 0.97718 1.48520 1.30004 1.44226 1.12303 1.20401 0.82849 0.79132 0.88015 1.90776 1.28273 1.47517 1.73175 1.21398 0.93078 0.93167 0.91840 1.47587 1.16075 1.03422 1.49551 1.76752 1.22838 0.87041 1.17077 1.25060 0.90403 0.99576 0.96401 1.20510 0.99252 0.94034 1.10000 1.20773 0.91054 0.98671 0.91712 1.21644 1.02931 0.93142 1.06452 1.22743 0.88429 0.99084 0.89723 1.66740 1.11226 1.26157 1.17495 1.18927 0.88070 0.90601 0.93765 1.22411 0.97618 1.01710 0.78706 1.22714 0.95181 0.99287 0.94761 0.89487 1.20579 0.97283 0.92721 0.85638 1.42373 1.82632 1.07509 1.05213 1.19199 1.38822 0.92684 0.86534 0.91161 1.24759 1.02436 0.95585 0.98171 1.69665 1.53697 1.04339 1.30303 0.86190 0.77888 0.78063 0.84034 1.21712 1.21775 1.20763 0.92632 0.91552 0.92395 0.91200 0.91357 0.85966 0.85900 0.78085 0.84236 0.84141 0.81810 0.91020 0.89888 0.95719 0.96100 0.78231 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.13 37.16 0.34 -1.01 16 2 C -0.10 -1.10 3.01 -88.78 -0.27 -1.37 16 3 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 4 C 0.10 1.02 6.08 -3.06 -0.02 1.00 16 5 N -0.62 -8.86 3.32 -170.38 -0.57 -9.42 16 6 C 0.51 8.12 7.92 -10.98 -0.09 8.04 16 7 O -0.52 -10.97 16.68 5.56 0.09 -10.87 16 8 C 0.13 1.56 6.08 -5.19 -0.03 1.53 16 9 N -0.38 -5.27 3.13 -61.60 -0.19 -5.46 16 10 N -0.23 -3.05 12.40 31.85 0.39 -2.66 16 11 C 0.08 0.89 12.29 -15.18 -0.19 0.70 16 12 C -0.23 -2.58 6.38 -105.18 -0.67 -3.25 16 13 C 0.01 0.05 10.18 -39.36 -0.40 -0.35 16 14 C -0.22 -1.62 10.04 -39.82 -0.40 -2.02 16 15 C 0.17 1.56 11.15 -17.48 -0.19 1.36 16 16 N -0.50 -6.50 10.40 -12.34 -0.13 -6.63 16 17 C 0.32 4.47 7.97 -156.11 -1.24 3.22 16 18 C 0.12 2.00 6.33 -2.41 -0.02 1.99 16 19 C -0.10 -1.56 2.51 -88.35 -0.22 -1.79 16 20 H 0.09 1.44 8.04 -51.93 -0.42 1.03 16 21 C 0.17 3.23 5.72 -4.04 -0.02 3.20 16 22 N -0.73 -18.63 5.55 -59.91 -0.33 -18.96 16 23 C -0.24 -6.81 9.99 -15.06 -0.15 -6.97 16 24 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 27 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 34 H 0.07 0.59 7.82 -51.93 -0.41 0.19 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 41 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 43 H 0.08 1.68 8.03 -51.93 -0.42 1.27 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.42 7.96 -51.93 -0.41 0.00 16 46 H 0.38 10.41 7.67 -40.82 -0.31 10.09 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -38.60 396.50 -9.72 -48.31 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.99 Total: 6.28 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.67 Total: 3.81 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -0.10 Total: -71.24 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.60 -9.72 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.830 kcal (2) G-P(sol) polarization free energy of solvation -38.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds