Wall clock time and date at job start Wed Apr 1 2020 02:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.64096 * 2 1 4 4 C 1.54326 * 110.71911 * 123.14144 * 2 1 3 5 5 N 1.47022 * 107.26845 * 140.55804 * 4 2 1 6 6 C 1.34779 * 125.64882 * 181.02611 * 5 4 2 7 7 O 1.21273 * 120.00386 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99595 * 0.02562 * 6 5 4 9 9 N 1.46498 * 109.47124 * 180.02562 * 8 6 5 10 10 N 1.39839 * 125.38833 * 270.29141 * 9 8 6 11 11 C 1.30232 * 110.09619 * 180.15053 * 10 9 8 12 12 C 1.45858 * 107.65458 * 359.60530 * 11 10 9 13 13 C 1.40001 * 134.25984 * 180.23893 * 12 11 10 14 14 C 1.37018 * 118.15277 * 180.02562 * 13 12 11 15 15 C 1.38803 * 119.65301 * 359.92361 * 14 13 12 16 16 N 1.31514 * 121.58476 * 0.06364 * 15 14 13 17 17 C 1.32765 * 121.47200 * 359.97438 * 16 15 14 18 18 C 1.47425 * 108.70469 * 1.28673 * 5 4 2 19 19 C 1.55126 * 104.72419 * 335.55307 * 18 5 4 20 20 H 1.08997 * 111.22693 * 279.17896 * 19 18 5 21 21 C 1.52998 * 110.90924 * 155.27180 * 19 18 5 22 22 N 1.46505 * 109.47036 * 72.97587 * 21 19 18 23 23 C 1.36935 * 120.00140 * 180.02562 * 22 21 19 24 24 H 1.07994 * 119.99998 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99926 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00237 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00093 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46908 * 89.99958 * 27 25 23 29 29 H 1.48498 * 109.47281 * 210.00043 * 27 25 23 30 30 H 1.48501 * 109.47050 * 330.00043 * 27 25 23 31 31 H 1.08998 * 109.47367 * 298.31358 * 1 2 3 32 32 H 1.09005 * 109.46971 * 58.31364 * 1 2 3 33 33 H 1.09002 * 109.47448 * 178.30679 * 1 2 3 34 34 H 1.08999 * 109.87830 * 21.14286 * 4 2 1 35 35 H 1.08993 * 109.88289 * 259.97243 * 4 2 1 36 36 H 1.08993 * 109.47316 * 60.00034 * 8 6 5 37 37 H 1.09005 * 109.46975 * 300.00094 * 8 6 5 38 38 H 1.08002 * 126.17589 * 179.87973 * 11 10 9 39 39 H 1.07998 * 120.91975 * 359.97438 * 13 12 11 40 40 H 1.08007 * 120.17259 * 179.97438 * 14 13 12 41 41 H 1.07994 * 119.21075 * 180.02562 * 15 14 13 42 42 H 1.09001 * 110.36567 * 94.48494 * 18 5 4 43 43 H 1.09000 * 110.36999 * 216.80531 * 18 5 4 44 44 H 1.08994 * 109.47254 * 192.97827 * 21 19 18 45 45 H 1.08999 * 109.47242 * 312.98244 * 21 19 18 46 46 H 0.97006 * 119.99861 * 0.02562 * 22 21 19 47 47 H 0.97000 * 119.99914 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2444 -1.5494 0.7416 6 6 3.9923 -2.3811 1.4937 7 8 4.9383 -2.9585 1.0014 8 6 3.6528 -2.5935 2.9466 9 7 4.6076 -3.5335 3.5388 10 7 4.4590 -4.9235 3.5753 11 6 5.4800 -5.4671 4.1736 12 6 6.3873 -4.3937 4.5635 13 6 7.6235 -4.3490 5.2191 14 6 8.2039 -3.1245 5.4219 15 6 7.5608 -1.9777 4.9770 16 7 6.3997 -2.0336 4.3621 17 6 5.7890 -3.1910 4.1381 18 6 3.4665 -1.2467 -0.6840 19 6 2.0790 -0.7975 -1.2125 20 1 1.4448 -1.6556 -1.4351 21 6 2.2278 0.1039 -2.4397 22 7 2.6329 -0.7039 -3.5928 23 6 2.8291 -0.1092 -4.8105 24 1 2.6848 0.9554 -4.9210 25 6 3.2125 -0.8747 -5.9031 26 7 3.3879 -2.1723 -5.7686 27 14 3.4795 -0.0635 -7.5645 28 1 4.8959 0.3666 -7.6833 29 1 3.1641 -1.0323 -8.6448 30 1 2.5909 1.1200 -7.6860 31 1 -0.3634 0.4874 0.9047 32 1 -0.3633 0.5398 -0.8745 33 1 -0.3634 -1.0272 -0.0304 34 1 1.3128 -1.4732 1.5800 35 1 2.3740 -0.0991 1.9979 36 1 2.6445 -2.9992 3.0286 37 1 3.7054 -1.6414 3.4749 38 1 5.6303 -6.5227 4.3457 39 1 8.1058 -5.2546 5.5564 40 1 9.1571 -3.0521 5.9246 41 1 8.0249 -1.0163 5.1403 42 1 4.1947 -0.4428 -0.7921 43 1 3.8031 -2.1381 -1.2132 44 1 1.2749 0.5884 -2.6524 45 1 2.9854 0.8626 -2.2436 46 1 2.7621 -1.6602 -3.4936 47 1 3.6554 -2.7073 -6.5322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569843261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:54 Heat of formation + Delta-G solvation = 61.390837 kcal Electronic energy + Delta-G solvation = -29205.482612 eV Core-core repulsion = 25196.213646 eV Total energy + Delta-G solvation = -4009.268965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58779 -41.28629 -39.38882 -38.84800 -36.51313 -34.93191 -34.30457 -33.08614 -32.80270 -31.15633 -30.84807 -28.82752 -27.27899 -26.81346 -24.98202 -24.88276 -23.67749 -22.72937 -22.04896 -21.26671 -20.52275 -19.18979 -18.76987 -18.41622 -18.07316 -17.42240 -17.05632 -16.69604 -16.63994 -16.21609 -15.66589 -15.40910 -15.24032 -15.17308 -14.97557 -14.90316 -14.41775 -14.21090 -14.10365 -13.64598 -13.55958 -13.47512 -13.44089 -13.30985 -13.22515 -12.95717 -12.80013 -12.47887 -12.17119 -12.03832 -11.96800 -11.86004 -11.79091 -11.62752 -11.40213 -11.12319 -10.96747 -10.46824 -10.05681 -9.82388 -9.33197 -9.03932 -7.97823 -5.27686 -0.17878 0.33501 0.97290 1.35248 1.44099 1.44651 1.46855 1.55205 1.87508 2.53267 2.81969 3.19401 3.21806 3.28114 3.36075 3.46603 3.61734 3.69976 3.75092 3.85207 3.97362 4.08570 4.12338 4.17869 4.22514 4.36740 4.45538 4.47665 4.50412 4.63048 4.64408 4.76978 4.79448 4.81486 4.84525 5.02834 5.05901 5.16647 5.21671 5.22206 5.32111 5.35650 5.46106 5.51584 5.56401 5.80172 6.23515 6.34270 6.39700 6.88460 6.94321 7.29265 8.05102 8.26907 9.25989 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.002292 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.448003 B =12213.139358 C =13159.304568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.099 0.901 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.503 3.497 7 O -0.587 6.587 8 C 0.139 3.861 9 N -0.395 5.395 10 N -0.269 5.269 11 C 0.095 3.905 12 C -0.250 4.250 13 C 0.009 3.991 14 C -0.212 4.212 15 C 0.158 3.842 16 N -0.539 5.539 17 C 0.290 3.710 18 C 0.121 3.879 19 C -0.090 4.090 20 H 0.075 0.925 21 C 0.165 3.835 22 N -0.749 5.749 23 C -0.244 4.244 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.973 5.973 27 Si 0.976 3.024 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.264 1.264 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.242 0.758 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.193 0.807 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.023 0.977 46 H 0.370 0.630 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 0.188 31.721 31.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.117 0.883 4 C -0.025 4.025 5 N -0.345 5.345 6 C 0.292 3.708 7 O -0.467 6.467 8 C 0.014 3.986 9 N -0.185 5.185 10 N -0.080 5.080 11 C -0.104 4.104 12 C -0.259 4.259 13 C -0.019 4.019 14 C -0.234 4.234 15 C -0.009 4.009 16 N -0.254 5.254 17 C 0.053 3.947 18 C -0.002 4.002 19 C -0.110 4.110 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.391 5.391 23 C -0.375 4.375 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.624 5.624 27 Si 0.805 3.195 28 H -0.216 1.216 29 H -0.222 1.222 30 H -0.189 1.189 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.258 0.742 39 H 0.196 0.804 40 H 0.198 0.802 41 H 0.209 0.791 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.490 0.629 30.444 30.455 hybrid contribution 1.526 -0.789 -1.196 2.094 sum 2.017 -0.161 29.248 29.318 Atomic orbital electron populations 1.21738 0.91796 1.02528 1.03292 1.22222 0.97816 0.99367 0.91073 0.88303 1.22587 0.86554 0.95447 0.97869 1.48596 1.30914 1.44128 1.10891 1.21292 0.81840 0.78065 0.89644 1.90731 1.31151 1.50065 1.74706 1.21504 0.94090 0.94461 0.88576 1.47740 1.16775 1.03712 1.50294 1.76674 1.24780 0.87350 1.19220 1.25801 0.89151 1.01169 0.94252 1.20926 1.00618 0.93453 1.10950 1.21307 0.89736 1.00611 0.90269 1.22109 1.03892 0.92152 1.05204 1.23434 0.87573 1.01306 0.88614 1.66740 1.12936 1.26484 1.19277 1.19361 0.88654 0.91894 0.94834 1.22117 0.98249 0.99125 0.80690 1.22527 0.94303 0.98980 0.95158 0.90625 1.20751 0.97312 0.92810 0.85256 1.42645 1.82766 1.07385 1.06312 1.19669 1.37098 0.93184 0.87586 0.90174 1.25653 1.03288 0.96186 1.02125 1.69847 1.55642 1.05937 1.30995 0.85095 0.77814 0.77409 0.79185 1.21616 1.22245 1.18862 0.89420 0.92497 0.92529 0.88453 0.87920 0.83322 0.83641 0.74188 0.80428 0.80242 0.79053 0.92317 0.94526 0.94483 0.95916 0.79844 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.13 71.98 0.66 -1.55 16 2 C -0.09 -1.74 3.01 -9.60 -0.03 -1.77 16 3 H 0.10 1.86 8.04 -2.39 -0.02 1.84 16 4 C 0.10 1.72 6.08 86.73 0.53 2.25 16 5 N -0.61 -17.81 3.32 -811.37 -2.70 -20.51 16 6 C 0.50 16.62 7.92 87.66 0.69 17.32 16 7 O -0.59 -26.47 16.68 -3.01 -0.05 -26.52 16 8 C 0.14 3.28 6.08 85.63 0.52 3.80 16 9 N -0.40 -11.24 3.13 -348.81 -1.09 -12.33 16 10 N -0.27 -7.39 12.40 -53.15 -0.66 -8.05 16 11 C 0.09 1.93 12.29 86.90 1.07 3.00 16 12 C -0.25 -5.46 6.38 -20.23 -0.13 -5.59 16 13 C 0.01 0.12 10.18 22.41 0.23 0.35 16 14 C -0.21 -2.53 10.04 22.12 0.22 -2.31 16 15 C 0.16 2.68 11.15 84.88 0.95 3.63 16 16 N -0.54 -13.89 10.40 -192.96 -2.01 -15.90 16 17 C 0.29 8.05 7.97 134.12 1.07 9.12 16 18 C 0.12 4.41 6.33 86.93 0.55 4.96 16 19 C -0.09 -2.86 2.51 -9.32 -0.02 -2.89 16 20 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 21 C 0.17 6.50 5.72 86.38 0.49 6.99 16 22 N -0.75 -39.36 5.55 -343.46 -1.91 -41.26 16 23 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 24 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 25 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 26 N -0.97 -62.49 13.06 21.65 0.28 -62.21 16 27 Si 0.98 47.55 29.55 68.60 2.03 49.57 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 30 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 34 H 0.10 1.29 7.82 -2.39 -0.02 1.27 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.15 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.24 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.18 0.67 8.06 -2.91 -0.02 0.64 16 41 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.06 2.24 7.91 -2.39 -0.02 2.22 16 43 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.02 0.90 7.96 -2.39 -0.02 0.88 16 46 H 0.37 21.23 7.67 -92.70 -0.71 20.52 16 47 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -91.50 396.50 2.27 -89.23 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.27 Total: 28.15 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 8.10 Total: 19.84 kcal Atomic # 7 Polarization: -152.19 SS G_CDS: -8.08 Total: -160.26 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -91.50 2.27 -89.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569843261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.618 kcal (2) G-P(sol) polarization free energy of solvation -91.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds