Wall clock time and date at job start Wed Apr 1 2020 02:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47205 * 2 1 4 4 C 1.50700 * 109.47393 * 239.99793 * 2 1 3 5 5 C 1.38338 * 119.93753 * 295.21114 * 4 2 1 6 6 C 1.38294 * 120.23455 * 180.23408 * 5 4 2 7 7 C 1.38044 * 120.11624 * 359.48513 * 6 5 4 8 8 C 1.39277 * 119.88351 * 0.25560 * 7 6 5 9 9 C 1.48459 * 120.12159 * 179.97438 * 8 7 6 10 10 N 1.34048 * 126.68006 * 179.68993 * 9 8 7 11 11 N 1.28982 * 107.27195 * 179.83487 * 10 9 8 12 12 N 1.28734 * 108.94276 * 0.42912 * 11 10 9 13 13 H 0.96993 * 125.34095 * 179.70099 * 12 11 10 14 14 N 1.28875 * 109.31673 * 359.72775 * 12 11 10 15 15 C 1.37999 * 119.94381 * 114.93144 * 4 2 1 16 16 N 1.46499 * 109.47072 * 119.99587 * 2 1 3 17 17 C 1.46509 * 120.00130 * 53.97424 * 16 2 1 18 18 C 1.34774 * 120.00351 * 233.97116 * 16 2 1 19 19 O 1.21285 * 120.00072 * 0.02562 * 18 16 2 20 20 C 1.50701 * 120.00353 * 179.97438 * 18 16 2 21 21 C 1.53005 * 109.47243 * 180.02562 * 20 18 16 22 22 C 1.52995 * 109.46731 * 180.02562 * 21 20 18 23 23 C 1.50708 * 109.46513 * 180.02562 * 22 21 20 24 24 H 1.07995 * 120.00116 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99650 * 179.97438 * 23 22 21 26 26 N 1.31519 * 120.00188 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99983 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46766 * 89.99985 * 27 25 23 29 29 H 1.48493 * 109.47602 * 210.00058 * 27 25 23 30 30 H 1.48504 * 109.47265 * 330.00726 * 27 25 23 31 31 H 1.09004 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47034 * 300.00599 * 1 2 3 33 33 H 1.08990 * 109.46815 * 60.00346 * 1 2 3 34 34 H 1.08006 * 119.88523 * 359.97438 * 5 4 2 35 35 H 1.08007 * 119.94272 * 179.76508 * 6 5 4 36 36 H 1.08006 * 120.06103 * 180.23788 * 7 6 5 37 37 H 1.08001 * 120.05964 * 0.04215 * 15 4 2 38 38 H 1.08998 * 109.46750 * 87.61339 * 17 16 2 39 39 H 1.09000 * 109.47153 * 207.61608 * 17 16 2 40 40 H 1.08998 * 109.46780 * 327.62140 * 17 16 2 41 41 H 1.09000 * 109.47303 * 300.00414 * 20 18 16 42 42 H 1.09004 * 109.46539 * 60.00379 * 20 18 16 43 43 H 1.09000 * 109.47165 * 300.00322 * 21 20 18 44 44 H 1.08997 * 109.46360 * 60.00462 * 21 20 18 45 45 H 1.09000 * 109.47177 * 299.99847 * 22 21 20 46 46 H 1.08992 * 109.47533 * 60.00366 * 22 21 20 47 47 H 0.96996 * 119.99777 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7812 -2.0603 -1.3992 6 6 2.2435 -2.7194 -2.5236 7 6 2.9496 -2.0304 -3.4891 8 6 3.2007 -0.6701 -3.3268 9 6 3.9600 0.0760 -4.3616 10 7 4.2697 1.3801 -4.3428 11 7 4.9347 1.6313 -5.4191 12 7 5.0431 0.5479 -6.1058 13 1 5.4952 0.4680 -6.9602 14 7 4.4560 -0.4139 -5.4803 15 6 2.7373 -0.0121 -2.1895 16 7 2.0183 -0.6905 1.1962 17 6 1.5590 -2.0489 1.4968 18 6 2.8902 -0.0763 2.0202 19 8 3.2703 1.0483 1.7717 20 6 3.3921 -0.7864 3.2510 21 6 4.3617 0.1251 4.0061 22 6 4.8716 -0.5962 5.2553 23 6 5.8262 0.3020 5.9993 24 1 6.0466 1.2886 5.6193 25 6 6.4172 -0.1356 7.1656 26 7 6.1483 -1.3369 7.6286 27 14 7.6009 0.9773 8.0875 28 1 6.8465 1.7967 9.0697 29 1 8.6050 0.1486 8.8016 30 1 8.2918 1.8714 7.1239 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.2256 -2.6023 -0.6481 35 1 2.0479 -3.7743 -2.6487 36 1 3.3069 -2.5452 -4.3688 37 1 2.9296 1.0426 -2.0586 38 1 2.2038 -2.7699 0.9944 39 1 1.5971 -2.2154 2.5733 40 1 0.5343 -2.1717 1.1461 41 1 2.5495 -1.0342 3.8966 42 1 3.9067 -1.7016 2.9580 43 1 5.2043 0.3732 3.3607 44 1 3.8466 1.0399 4.2991 45 1 4.0292 -0.8446 5.9008 46 1 5.3867 -1.5108 4.9620 47 1 6.5638 -1.6445 8.4493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603730669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:05 Heat of formation + Delta-G solvation = 103.933382 kcal Electronic energy + Delta-G solvation = -28733.501393 eV Core-core repulsion = 24726.077211 eV Total energy + Delta-G solvation = -4007.424182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.76254 -40.46619 -39.12020 -36.31193 -34.68533 -34.20437 -33.84192 -32.70964 -31.76930 -30.95223 -29.62395 -27.74554 -27.20137 -25.14643 -24.73962 -24.28375 -23.16033 -22.25847 -21.05437 -20.06015 -19.50718 -18.80656 -17.44942 -17.19965 -16.84580 -16.48232 -16.06971 -15.65992 -15.51568 -14.99616 -14.57410 -14.37610 -14.15382 -13.97576 -13.77327 -13.51371 -13.14001 -12.88354 -12.68799 -12.51838 -12.47989 -12.38755 -12.17470 -11.78405 -11.71770 -11.67902 -11.50970 -11.40928 -11.30749 -11.19755 -11.04281 -10.77356 -10.53438 -10.50071 -9.62985 -9.61519 -9.27461 -9.12508 -8.99772 -8.89442 -8.67374 -8.28788 -5.94691 -3.95686 0.39545 0.88350 1.04407 1.90750 2.04514 2.92104 3.02860 3.36053 3.37238 3.42884 3.48194 3.55391 3.86784 4.39170 4.52074 4.58141 4.75723 4.77654 4.89379 4.95016 5.05217 5.09726 5.11423 5.16443 5.26409 5.35265 5.39372 5.41449 5.56569 5.60657 5.66921 5.72961 5.76974 5.80189 5.90802 6.00162 6.10672 6.12774 6.24150 6.29160 6.56111 6.57535 6.77422 6.97956 7.20527 7.45911 7.74659 7.82986 7.87607 8.06350 8.43853 8.50725 9.11408 9.68079 11.16818 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.011828 B = 0.002166 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.780209 B =12921.489017 C =14289.448222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 H 0.111 0.889 4 C -0.093 4.093 5 C -0.091 4.091 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.021 4.021 9 C 0.222 3.778 10 N -0.265 5.265 11 N -0.048 5.048 12 N -0.229 5.229 13 H 0.475 0.525 14 N -0.296 5.296 15 C -0.060 4.060 16 N -0.618 5.618 17 C 0.069 3.931 18 C 0.516 3.484 19 O -0.534 6.534 20 C -0.136 4.136 21 C -0.096 4.096 22 C 0.021 3.979 23 C -0.516 4.516 24 H 0.056 0.944 25 C 0.055 3.945 26 N -0.898 5.898 27 Si 0.891 3.109 28 H -0.281 1.281 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 -4.997 -28.506 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.070 3.930 3 H 0.129 0.871 4 C -0.094 4.094 5 C -0.110 4.110 6 C -0.141 4.141 7 C -0.100 4.100 8 C -0.025 4.025 9 C -0.057 4.057 10 N -0.138 5.138 11 N -0.043 5.043 12 N -0.075 5.075 13 H 0.329 0.671 14 N -0.148 5.148 15 C -0.081 4.081 16 N -0.352 5.352 17 C -0.074 4.074 18 C 0.306 3.694 19 O -0.409 6.409 20 C -0.175 4.175 21 C -0.134 4.134 22 C -0.016 4.016 23 C -0.555 4.555 24 H 0.074 0.926 25 C -0.145 4.145 26 N -0.538 5.538 27 Si 0.719 3.281 28 H -0.207 1.207 29 H -0.213 1.213 30 H -0.198 1.198 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.051 -3.943 -28.748 31.420 hybrid contribution 0.839 -0.113 0.080 0.850 sum -11.212 -4.057 -28.668 31.048 Atomic orbital electron populations 1.22139 0.93858 1.02550 1.02927 1.19881 0.94122 0.97568 0.81423 0.87136 1.20104 0.98778 0.94467 0.96053 1.21445 0.98316 0.93996 0.97286 1.21067 0.98812 1.00196 0.93999 1.21148 0.97151 0.92357 0.99389 1.17177 1.00419 0.92638 0.92221 1.23714 0.99815 0.89069 0.93123 1.76145 1.11931 1.13528 1.12156 1.78950 1.13711 1.11519 1.00119 1.47733 1.36313 1.03196 1.20233 0.67068 1.74902 1.14143 1.17450 1.08296 1.21101 0.94668 1.00777 0.91519 1.48012 1.46445 1.16493 1.24291 1.21978 0.99721 0.83103 1.02593 1.21317 0.77158 0.86447 0.84508 1.90670 1.56860 1.19173 1.74199 1.21871 1.01292 1.00735 0.93637 1.21460 0.96628 0.97548 0.97733 1.19126 0.95906 0.95586 0.91007 1.21280 1.25564 1.01182 1.07446 0.92587 1.25020 0.96916 0.95136 0.97474 1.69963 1.44227 1.17585 1.22015 0.86599 0.80903 0.80614 0.79941 1.20684 1.21292 1.19839 0.91993 0.91498 0.91190 0.84965 0.85126 0.85077 0.84450 0.92391 0.90103 0.91038 0.89352 0.89427 0.92737 0.92698 0.96634 0.96639 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 8.89 37.16 0.33 -0.94 16 2 C 0.17 1.89 2.95 -69.08 -0.20 1.69 16 3 H 0.11 1.45 6.66 -51.93 -0.35 1.11 16 4 C -0.09 -0.94 4.96 -104.67 -0.52 -1.46 16 5 C -0.09 -0.75 8.11 -39.52 -0.32 -1.07 16 6 C -0.12 -0.92 10.03 -39.63 -0.40 -1.32 16 7 C -0.08 -0.69 9.70 -39.27 -0.38 -1.08 16 8 C -0.02 -0.23 5.88 -104.89 -0.62 -0.84 16 9 C 0.22 2.50 7.94 -156.30 -1.24 1.26 16 10 N -0.26 -3.28 12.23 32.16 0.39 -2.88 16 11 N -0.05 -0.49 13.47 60.35 0.81 0.33 16 12 N -0.23 -1.60 7.90 60.35 0.48 -1.13 16 13 H 0.48 0.91 8.96 -340.37 -3.05 -2.14 16 14 N -0.30 -2.74 12.08 32.17 0.39 -2.36 16 15 C -0.06 -0.67 9.32 -39.27 -0.37 -1.03 16 16 N -0.62 -7.46 2.75 -175.26 -0.48 -7.94 16 17 C 0.07 0.58 8.18 59.85 0.49 1.07 16 18 C 0.52 8.46 7.67 -10.99 -0.08 8.37 16 19 O -0.53 -10.80 15.32 5.55 0.09 -10.71 16 20 C -0.14 -2.28 4.22 -27.88 -0.12 -2.39 16 21 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 22 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 23 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 24 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 25 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 26 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 27 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.06 0.40 6.06 -51.93 -0.31 0.09 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.13 0.83 4.95 -52.48 -0.26 0.57 16 35 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 36 H 0.13 0.96 7.88 -52.48 -0.41 0.54 16 37 H 0.14 1.61 7.78 -52.49 -0.41 1.20 16 38 H 0.06 0.45 6.98 -51.93 -0.36 0.08 16 39 H 0.08 0.68 6.35 -51.93 -0.33 0.35 16 40 H 0.07 0.43 5.53 -51.93 -0.29 0.14 16 41 H 0.09 1.33 7.41 -51.93 -0.38 0.94 16 42 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 43 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -36.90 389.28 -9.91 -46.81 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -9.07 Total: -5.24 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -4.10 Total: -13.47 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 2.33 Total: -40.49 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.90 -9.91 -46.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603730669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.744 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds