Wall clock time and date at job start Wed Apr 1 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46986 * 2 1 4 4 N 1.46504 * 109.47212 * 119.99899 * 2 1 3 5 5 C 1.36932 * 120.00284 * 286.66070 * 4 2 1 6 6 H 1.07996 * 119.99628 * 0.02562 * 5 4 2 7 7 C 1.38807 * 119.99825 * 179.72393 * 5 4 2 8 8 N 1.31621 * 120.00185 * 0.27325 * 7 5 4 9 9 Si 1.86803 * 119.99908 * 180.27487 * 7 5 4 10 10 H 1.48500 * 109.46840 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46822 * 119.99651 * 9 7 5 12 12 H 1.48494 * 109.47414 * 239.99993 * 9 7 5 13 13 C 1.52997 * 109.47512 * 240.00568 * 2 1 3 14 14 H 1.09002 * 109.58277 * 286.29747 * 13 2 1 15 15 C 1.53190 * 109.58660 * 46.57821 * 13 2 1 16 16 C 1.53044 * 109.31602 * 174.42672 * 15 13 2 17 17 C 1.53043 * 109.53387 * 298.64019 * 16 15 13 18 18 C 1.53187 * 109.31873 * 61.36084 * 17 16 15 19 19 N 1.46928 * 109.59200 * 166.01638 * 13 2 1 20 20 C 1.34777 * 120.62567 * 6.60506 * 19 13 2 21 21 O 1.21629 * 120.00165 * 4.33588 * 20 19 13 22 22 C 1.47210 * 119.99687 * 184.33606 * 20 19 13 23 23 C 1.37761 * 119.93689 * 128.36974 * 22 20 19 24 24 C 1.39856 * 119.92363 * 179.73260 * 23 22 20 25 25 C 1.36305 * 119.82630 * 0.56260 * 24 23 22 26 26 C 1.40770 * 119.70489 * 359.70975 * 25 24 23 27 27 N 1.32821 * 132.74642 * 180.02562 * 26 25 24 28 28 C 1.32364 * 109.74514 * 179.97438 * 27 26 25 29 29 N 1.31387 * 109.62201 * 359.97438 * 28 27 26 30 30 N 1.36554 * 119.87647 * 0.02562 * 26 25 24 31 31 H 1.09001 * 109.47239 * 299.99380 * 1 2 3 32 32 H 1.09000 * 109.47085 * 59.99925 * 1 2 3 33 33 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99400 * 106.66281 * 4 2 1 35 35 H 0.97001 * 119.99986 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.50482 * 294.37751 * 15 13 2 37 37 H 1.09005 * 109.49882 * 54.44333 * 15 13 2 38 38 H 1.09003 * 109.46084 * 58.65168 * 16 15 13 39 39 H 1.08998 * 109.46487 * 178.61686 * 16 15 13 40 40 H 1.09008 * 109.49756 * 181.31734 * 17 16 15 41 41 H 1.09010 * 109.49827 * 301.40528 * 17 16 15 42 42 H 1.09002 * 109.58325 * 65.14822 * 18 17 16 43 43 H 1.09001 * 109.58977 * 185.57793 * 18 17 16 44 44 H 1.07995 * 120.03503 * 359.97438 * 23 22 20 45 45 H 1.08008 * 120.08662 * 180.25239 * 24 23 22 46 46 H 1.07997 * 120.14742 * 179.73127 * 25 24 23 47 47 H 1.08004 * 125.19256 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9261 -0.0862 2.4214 6 1 1.4929 0.8995 2.5060 7 6 2.3836 -0.7429 3.5555 8 7 2.9110 -1.9444 3.4525 9 14 2.2507 0.0785 5.2280 10 1 1.6245 1.4162 5.0741 11 1 1.4145 -0.7586 6.1254 12 1 3.6066 0.2305 5.8140 13 6 2.0401 -0.7211 -1.2493 14 1 1.8902 -1.7950 -1.1380 15 6 1.2760 -0.2206 -2.4791 16 6 1.8833 -0.8409 -3.7394 17 6 3.3454 -0.4076 -3.8696 18 6 4.1329 -0.9102 -2.6556 19 7 3.4707 -0.4397 -1.4309 20 6 4.1611 0.2399 -0.4940 21 8 3.6209 0.5579 0.5483 22 6 5.5692 0.5973 -0.7322 23 6 5.9853 1.9000 -0.5662 24 6 7.3243 2.2382 -0.7871 25 6 8.2104 1.2788 -1.1773 26 6 7.7715 -0.0477 -1.3490 27 7 8.3940 -1.1634 -1.7122 28 6 7.5352 -2.1704 -1.7260 29 7 6.3445 -1.7397 -1.3753 30 7 6.4625 -0.3655 -1.1247 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 2.4071 -1.5760 1.1202 35 1 3.2311 -2.4032 4.2449 36 1 0.2283 -0.5107 -2.3995 37 1 1.3495 0.8655 -2.5359 38 1 1.8315 -1.9276 -3.6706 39 1 1.3260 -0.5057 -4.6141 40 1 3.7706 -0.8307 -4.7798 41 1 3.3999 0.6803 -3.9137 42 1 4.1556 -1.9999 -2.6605 43 1 5.1504 -0.5211 -2.6935 44 1 5.2792 2.6585 -0.2620 45 1 7.6542 3.2580 -0.6538 46 1 9.2446 1.5351 -1.3536 47 1 7.7765 -3.1908 -1.9852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660448621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:20 Heat of formation + Delta-G solvation = 157.256172 kcal Electronic energy + Delta-G solvation = -32137.287920 eV Core-core repulsion = 28132.175988 eV Total energy + Delta-G solvation = -4005.111933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.74085 -40.23452 -37.96468 -36.80008 -35.34638 -33.70369 -32.40484 -32.24941 -30.94732 -29.96932 -29.84768 -27.81653 -25.81147 -24.31513 -24.12171 -23.47194 -22.95586 -22.30514 -20.68484 -20.02923 -19.07403 -17.99431 -17.50562 -16.74820 -16.54219 -16.27250 -15.69170 -15.49122 -14.95819 -14.59506 -14.29841 -14.22648 -13.90436 -13.62797 -13.50038 -13.15046 -12.97831 -12.85437 -12.69548 -12.53530 -12.20701 -12.10581 -12.00786 -11.63999 -11.40892 -11.32800 -11.12832 -10.85553 -10.81799 -10.70587 -10.60838 -10.40893 -10.17572 -10.06448 -9.73665 -9.59611 -9.47118 -8.71567 -8.67678 -8.22844 -8.09148 -6.57056 -5.53416 -2.73417 0.37302 0.91560 1.94095 2.59351 3.13466 3.16822 3.45441 3.54753 3.59141 3.61723 3.91454 4.17439 4.51160 4.71361 4.74596 4.80692 4.82943 4.92565 4.94876 5.09285 5.19562 5.28708 5.42872 5.45996 5.60860 5.68371 5.75274 5.83025 5.85994 5.87320 5.89206 5.98924 6.06776 6.10006 6.10960 6.12357 6.22076 6.30435 6.36647 6.42420 6.43629 6.63986 6.75433 6.85096 6.99255 7.29780 7.75195 7.90330 7.93579 8.60340 8.66510 9.74721 10.32022 10.66888 11.70330 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009396 B = 0.005312 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.294162 B = 5269.325882 C = 6995.301694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.059 0.941 4 N -0.690 5.690 5 C -0.188 4.188 6 H 0.065 0.935 7 C -0.025 4.025 8 N -0.939 5.939 9 Si 0.899 3.101 10 H -0.283 1.283 11 H -0.296 1.296 12 H -0.297 1.297 13 C 0.148 3.852 14 H 0.070 0.930 15 C -0.127 4.127 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.120 3.880 19 N -0.594 5.594 20 C 0.519 3.481 21 O -0.408 6.408 22 C 0.126 3.874 23 C -0.117 4.117 24 C -0.059 4.059 25 C -0.105 4.105 26 C 0.275 3.725 27 N -0.550 5.550 28 C 0.229 3.771 29 N -0.322 5.322 30 N -0.272 5.272 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.379 0.621 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 6.589 -18.468 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.069 3.931 3 H 0.076 0.924 4 N -0.331 5.331 5 C -0.320 4.320 6 H 0.083 0.917 7 C -0.220 4.220 8 N -0.590 5.590 9 Si 0.732 3.268 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.224 1.224 13 C 0.045 3.955 14 H 0.088 0.912 15 C -0.166 4.166 16 C -0.156 4.156 17 C -0.175 4.175 18 C -0.004 4.004 19 N -0.330 5.330 20 C 0.301 3.699 21 O -0.274 6.274 22 C 0.014 3.986 23 C -0.140 4.140 24 C -0.085 4.085 25 C -0.127 4.127 26 C 0.022 3.978 27 N -0.280 5.280 28 C -0.071 4.071 29 N -0.153 5.153 30 N -0.049 5.049 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.212 0.788 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.183 0.817 45 H 0.172 0.828 46 H 0.174 0.826 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.356 6.216 -17.754 19.558 hybrid contribution 0.412 -0.003 1.024 1.104 sum 5.768 6.212 -16.730 18.755 Atomic orbital electron populations 1.22565 0.99380 1.00822 1.00077 1.20460 0.90819 0.96661 0.85172 0.92395 1.42326 1.71004 1.18167 1.01577 1.19074 1.30156 0.98669 0.84098 0.91679 1.24605 1.02931 0.97035 0.97380 1.69667 1.48172 1.13518 1.27597 0.86202 0.76885 0.78282 0.85467 1.20842 1.22415 1.22446 1.21559 0.78261 0.99954 0.95698 0.91211 1.22031 0.99793 1.00914 0.93852 1.21522 0.95298 1.00840 0.97927 1.21980 0.96359 1.01253 0.97869 1.21753 0.95489 0.99758 0.83402 1.47649 1.09853 1.55894 1.19571 1.17700 0.83985 0.83155 0.85097 1.91429 1.65718 1.48136 1.22093 1.21127 0.91477 0.87524 0.98504 1.21300 0.97535 0.93456 1.01702 1.21180 0.91950 1.00461 0.94882 1.20354 1.01881 0.87321 1.03107 1.21861 0.82028 0.96143 0.97769 1.70795 1.31944 0.96904 1.28367 1.26196 0.85988 1.00095 0.94865 1.78853 1.22461 0.84990 1.28964 1.48037 1.08453 1.07505 1.40921 0.92583 0.94268 0.93569 0.78794 0.94175 0.90249 0.91576 0.91809 0.91987 0.91364 0.91894 0.91029 0.91156 0.81724 0.82791 0.82597 0.75990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.58 37.16 0.32 -2.71 16 2 C 0.18 3.60 1.85 -67.93 -0.13 3.47 16 3 H 0.06 1.26 6.27 -51.93 -0.33 0.93 16 4 N -0.69 -17.70 3.28 -53.43 -0.18 -17.87 16 5 C -0.19 -5.38 8.32 -15.06 -0.13 -5.50 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.03 -0.77 5.50 -17.43 -0.10 -0.86 16 8 N -0.94 -29.95 13.06 55.49 0.72 -29.22 16 9 Si 0.90 23.75 29.55 -169.99 -5.02 18.73 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 13 C 0.15 2.47 2.63 -67.60 -0.18 2.29 16 14 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 15 C -0.13 -1.60 4.36 -26.61 -0.12 -1.72 16 16 C -0.12 -1.26 5.88 -26.69 -0.16 -1.41 16 17 C -0.14 -1.48 6.08 -26.61 -0.16 -1.65 16 18 C 0.12 1.65 4.71 -3.70 -0.02 1.64 16 19 N -0.59 -9.85 2.98 -166.53 -0.50 -10.35 16 20 C 0.52 9.86 6.98 -12.62 -0.09 9.77 16 21 O -0.41 -9.49 10.12 5.25 0.05 -9.43 16 22 C 0.13 2.05 5.61 -82.05 -0.46 1.59 16 23 C -0.12 -1.46 9.70 -39.15 -0.38 -1.84 16 24 C -0.06 -0.55 10.04 -39.67 -0.40 -0.95 16 25 C -0.11 -1.13 10.09 -39.32 -0.40 -1.52 16 26 C 0.28 4.01 7.88 -156.37 -1.23 2.78 16 27 N -0.55 -8.20 11.24 -13.99 -0.16 -8.36 16 28 C 0.23 3.21 12.98 -92.01 -1.19 2.01 16 29 N -0.32 -5.34 9.88 29.25 0.29 -5.05 16 30 N -0.27 -4.42 2.72 -8.81 -0.02 -4.44 16 31 H 0.06 1.11 7.99 -51.93 -0.41 0.69 16 32 H 0.04 0.57 6.45 -51.93 -0.33 0.24 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.38 10.72 7.67 -40.82 -0.31 10.41 16 35 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 36 H 0.08 0.94 6.71 -51.93 -0.35 0.59 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.07 1.04 7.94 -51.93 -0.41 0.63 16 43 H 0.07 1.02 4.55 -51.93 -0.24 0.78 16 44 H 0.17 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 46 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 47 H 0.22 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -36.32 368.25 -10.65 -46.97 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.58 Total: 8.11 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -4.81 Total: 5.39 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: 0.16 Total: -75.30 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.05 Total: -9.43 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.32 -10.65 -46.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660448621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.223 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds