Wall clock time and date at job start Wed Apr 1 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46759 * 2 1 4 4 N 1.46500 * 109.47036 * 240.00833 * 2 1 3 5 5 C 1.36934 * 120.00432 * 84.72097 * 4 2 1 6 6 H 1.07998 * 120.00101 * 0.27564 * 5 4 2 7 7 C 1.38816 * 119.99848 * 180.27517 * 5 4 2 8 8 N 1.31623 * 119.99707 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46930 * 90.00118 * 9 7 5 11 11 H 1.48503 * 109.47422 * 210.00033 * 9 7 5 12 12 H 1.48498 * 109.47541 * 330.00666 * 9 7 5 13 13 C 1.52995 * 109.47314 * 120.00296 * 2 1 3 14 14 C 1.53038 * 109.46232 * 60.06753 * 13 2 1 15 15 C 1.53192 * 109.31283 * 178.61428 * 14 13 2 16 16 N 1.46922 * 108.77611 * 54.63733 * 15 14 13 17 17 C 1.34775 * 120.62934 * 126.36778 * 16 15 14 18 18 O 1.21546 * 120.00391 * 352.09073 * 17 16 15 19 19 C 1.47976 * 119.99851 * 172.09078 * 17 16 15 20 20 C 1.39728 * 119.42872 * 170.28616 * 19 17 16 21 21 C 1.36986 * 119.60223 * 180.02562 * 20 19 17 22 22 C 1.39896 * 118.36012 * 359.97438 * 21 20 19 23 23 N 1.35427 * 133.81505 * 180.02562 * 22 21 20 24 24 C 1.30213 * 109.58020 * 179.97438 * 23 22 21 25 25 N 1.35996 * 110.17914 * 359.97438 * 24 23 22 26 26 H 0.96996 * 126.29242 * 180.02562 * 25 24 23 27 27 C 1.37941 * 107.41389 * 0.02562 * 25 24 23 28 28 N 1.31883 * 133.83192 * 180.34374 * 27 25 24 29 29 C 1.46924 * 118.73936 * 306.39231 * 16 15 14 30 30 C 1.53043 * 109.45919 * 299.99907 * 13 2 1 31 31 H 1.09004 * 109.46580 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47189 * 299.99452 * 1 2 3 33 33 H 1.09000 * 109.47242 * 60.00278 * 1 2 3 34 34 H 0.97003 * 119.99283 * 264.99728 * 4 2 1 35 35 H 0.96998 * 119.99762 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.45976 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.49929 * 298.57071 * 14 13 2 38 38 H 1.09004 * 109.49190 * 58.66077 * 14 13 2 39 39 H 1.09000 * 109.58691 * 294.84799 * 15 14 13 40 40 H 1.09000 * 109.70044 * 174.49514 * 15 14 13 41 41 H 1.08000 * 120.19878 * 0.02562 * 20 19 17 42 42 H 1.08004 * 120.81987 * 180.02562 * 21 20 19 43 43 H 1.08005 * 124.91389 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.58250 * 293.82018 * 29 16 15 45 45 H 1.08996 * 109.70343 * 173.46241 * 29 16 15 46 46 H 1.08997 * 109.49988 * 301.34115 * 30 13 2 47 47 H 1.08999 * 109.49457 * 61.40329 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6904 -1.1963 5 6 2.1437 -0.0086 -2.3772 6 1 1.8869 1.0392 -2.4256 7 6 2.6010 -0.6644 -3.5120 8 7 2.7220 -0.0089 -4.6470 9 14 3.0460 -2.4766 -3.4280 10 1 1.8473 -3.2956 -3.7406 11 1 4.1167 -2.7697 -4.4145 12 1 3.5276 -2.8054 -2.0624 13 6 2.0401 -0.7213 1.2492 14 6 1.5313 -2.1646 1.2480 15 6 2.0722 -2.8935 2.4821 16 7 1.7088 -2.1265 3.6814 17 6 1.0554 -2.7165 4.7019 18 8 0.6345 -3.8502 4.5797 19 6 0.8504 -1.9841 5.9712 20 6 0.0019 -2.5196 6.9436 21 6 -0.1908 -1.8443 8.1198 22 6 0.4775 -0.6295 8.3057 23 7 0.5176 0.2739 9.3139 24 6 1.3084 1.2559 8.9887 25 7 1.8294 1.0481 7.7498 26 1 2.4454 1.6323 7.2806 27 6 1.3208 -0.1461 7.2830 28 7 1.4805 -0.8337 6.1690 29 6 2.0707 -0.7040 3.7469 30 6 1.5298 0.0003 2.4986 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.2491 -1.6316 -1.1527 35 1 3.0419 -0.4670 -5.4399 36 1 3.1301 -0.7208 1.2492 37 1 0.4416 -2.1662 1.2730 38 1 1.8757 -2.6710 0.3463 39 1 3.1572 -2.9722 2.4136 40 1 1.6364 -3.8908 2.5402 41 1 -0.4990 -3.4604 6.7690 42 1 -0.8421 -2.2404 8.8850 43 1 1.5206 2.1114 9.6129 44 1 3.1556 -0.6043 3.7815 45 1 1.6337 -0.2543 4.6384 46 1 1.8731 1.0348 2.4870 47 1 0.4401 -0.0212 2.5116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664443710.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:12 Heat of formation + Delta-G solvation = 86.587745 kcal Electronic energy + Delta-G solvation = -30014.334636 eV Core-core repulsion = 26006.158291 eV Total energy + Delta-G solvation = -4008.176345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.88928 -40.59987 -38.72328 -37.83499 -35.63700 -34.29322 -32.93018 -31.89193 -31.22531 -30.98175 -30.07552 -28.62027 -25.98983 -24.79603 -23.99527 -23.60118 -22.83758 -22.14835 -21.52125 -20.22532 -19.16389 -18.78916 -17.99333 -17.67987 -17.23881 -16.35861 -16.17047 -15.45988 -15.30837 -15.18935 -14.78693 -14.66820 -14.27837 -14.05588 -13.88818 -13.65219 -13.38363 -13.13467 -13.04073 -12.87983 -12.54623 -12.38851 -12.08193 -11.75797 -11.72311 -11.44287 -11.35214 -11.20249 -10.89976 -10.65627 -10.42701 -10.40912 -10.31291 -10.14996 -9.74208 -9.57047 -9.47766 -9.13430 -9.01869 -8.91115 -8.61503 -7.24301 -5.75429 -3.10036 -0.04307 0.73285 1.93655 2.01862 2.63708 2.81350 3.37676 3.40641 3.42604 3.46152 3.52183 3.79864 4.04583 4.36376 4.54748 4.58158 4.60307 4.92300 4.98764 5.05599 5.09270 5.20078 5.20796 5.39372 5.50792 5.53275 5.54572 5.56462 5.63286 5.70145 5.88488 5.93303 5.95484 6.07023 6.07330 6.17759 6.23790 6.24421 6.39727 6.45313 6.51110 6.61400 6.67943 6.83927 7.07653 7.09909 7.14888 7.31818 7.95253 8.02037 8.44165 9.23334 9.96090 10.16366 11.43226 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.021329 B = 0.002485 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.451195 B =11266.550717 C =12065.869944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.184 3.816 3 H 0.053 0.947 4 N -0.749 5.749 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.095 4.095 14 C -0.128 4.128 15 C 0.108 3.892 16 N -0.583 5.583 17 C 0.571 3.429 18 O -0.534 6.534 19 C 0.125 3.875 20 C -0.123 4.123 21 C -0.024 4.024 22 C 0.023 3.977 23 N -0.492 5.492 24 C 0.288 3.712 25 N -0.587 5.587 26 H 0.433 0.567 27 C 0.228 3.772 28 N -0.440 5.440 29 C 0.075 3.925 30 C -0.129 4.129 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.228 0.772 44 H 0.063 0.937 45 H 0.139 0.861 46 H 0.073 0.927 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 1.445 30.838 30.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.071 0.929 4 N -0.393 5.393 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.114 4.114 14 C -0.167 4.167 15 C -0.014 4.014 16 N -0.314 5.314 17 C 0.357 3.643 18 O -0.410 6.410 19 C -0.023 4.023 20 C -0.147 4.147 21 C -0.051 4.051 22 C -0.099 4.099 23 N -0.211 5.211 24 C 0.000 4.000 25 N -0.201 5.201 26 H 0.273 0.727 27 C -0.009 4.009 28 N -0.156 5.156 29 C -0.047 4.047 30 C -0.168 4.168 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.244 0.756 44 H 0.081 0.919 45 H 0.156 0.844 46 H 0.092 0.908 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.658 1.246 30.714 30.854 hybrid contribution 0.724 -0.952 -0.630 1.352 sum -1.934 0.294 30.084 30.148 Atomic orbital electron populations 1.22501 0.99135 1.00898 1.00170 1.20163 0.91889 0.95367 0.85145 0.92869 1.42860 1.79724 1.09577 1.07097 1.19081 1.36737 0.95574 0.85530 0.89309 1.24665 1.01651 0.97428 0.95568 1.69701 1.53058 1.35524 1.00117 0.86585 0.78163 0.86984 0.77003 1.21106 1.21800 1.20325 1.21455 1.00387 0.94563 0.95005 1.21983 1.01643 0.96175 0.96852 1.21781 0.99946 0.96093 0.83551 1.47966 1.55051 1.11685 1.16679 1.17730 0.78560 0.85550 0.82499 1.90799 1.50217 1.18243 1.81773 1.21023 0.95390 0.90214 0.95641 1.21569 0.98764 1.01824 0.92527 1.20500 0.96731 0.90749 0.97152 1.19887 1.00348 0.97242 0.92375 1.70466 1.20595 1.02747 1.27326 1.25614 0.91542 0.99068 0.83803 1.42906 1.41446 1.18724 1.17071 0.72696 1.19141 0.98297 0.90144 0.93293 1.66538 1.24069 1.06608 1.18407 1.22977 1.00746 0.79481 1.01480 1.22049 1.01363 0.99317 0.94051 0.93412 0.94178 0.92688 0.80616 0.93136 0.91043 0.90993 0.90507 0.91264 0.89035 0.82365 0.83182 0.75597 0.91888 0.84447 0.90848 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 8.78 37.16 0.33 -2.60 16 2 C 0.18 3.41 2.72 -67.93 -0.18 3.23 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.75 -17.38 4.85 -53.42 -0.26 -17.64 16 5 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -29.48 13.97 55.49 0.78 -28.70 16 9 Si 0.88 22.19 27.73 -169.99 -4.71 17.48 16 10 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 13 C -0.09 -1.42 2.14 -90.58 -0.19 -1.61 16 14 C -0.13 -1.90 4.81 -26.61 -0.13 -2.03 16 15 C 0.11 1.44 6.44 -3.71 -0.02 1.42 16 16 N -0.58 -7.48 2.97 -173.84 -0.52 -7.99 16 17 C 0.57 7.66 7.64 -12.27 -0.09 7.56 16 18 O -0.53 -8.39 15.76 5.33 0.08 -8.31 16 19 C 0.12 1.40 6.57 -82.97 -0.55 0.86 16 20 C -0.12 -1.16 9.54 -39.48 -0.38 -1.54 16 21 C -0.02 -0.20 10.16 -39.41 -0.40 -0.60 16 22 C 0.02 0.21 7.25 -84.58 -0.61 -0.40 16 23 N -0.49 -4.13 11.27 -11.93 -0.13 -4.27 16 24 C 0.29 1.27 12.96 -89.74 -1.16 0.11 16 25 N -0.59 -2.97 6.22 -13.20 -0.08 -3.06 16 26 H 0.43 0.91 8.96 -40.82 -0.37 0.55 16 27 C 0.23 2.05 8.46 -155.74 -1.32 0.73 16 28 N -0.44 -4.52 6.14 -8.82 -0.05 -4.57 16 29 C 0.08 0.85 5.86 -3.71 -0.02 0.83 16 30 C -0.13 -1.57 4.97 -26.61 -0.13 -1.71 16 31 H 0.05 0.83 6.46 -51.93 -0.34 0.49 16 32 H 0.04 0.59 6.46 -51.93 -0.34 0.26 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.36 8.22 3.90 -40.82 -0.16 8.06 16 35 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.09 6.51 -51.93 -0.34 0.76 16 38 H 0.08 1.24 6.46 -51.93 -0.34 0.91 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 41 H 0.16 1.33 7.64 -52.49 -0.40 0.93 16 42 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.23 -0.18 8.06 -52.48 -0.42 -0.61 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.14 1.47 4.05 -83.90 -0.34 1.13 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.86 6.51 -51.93 -0.34 0.52 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -36.19 369.10 -10.74 -46.94 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.28 Total: 7.19 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -5.12 Total: -2.62 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.27 Total: -66.23 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.19 -10.74 -46.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664443710.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.525 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds