Wall clock time and date at job start Wed Apr 1 2020 02:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46425 * 2 1 4 4 N 1.46497 * 109.47198 * 120.00140 * 2 1 3 5 5 C 1.36940 * 119.99856 * 274.99691 * 4 2 1 6 6 H 1.08003 * 120.00186 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99873 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99752 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47132 * 60.00746 * 9 7 5 11 11 H 1.48502 * 109.46977 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47688 * 300.00469 * 9 7 5 13 13 C 1.53001 * 109.46958 * 240.00184 * 2 1 3 14 14 C 1.53034 * 109.46053 * 180.02562 * 13 2 1 15 15 C 1.53187 * 109.31570 * 178.60174 * 14 13 2 16 16 N 1.46925 * 108.76705 * 54.65554 * 15 14 13 17 17 C 1.34772 * 120.63213 * 126.40665 * 16 15 14 18 18 O 1.21554 * 120.00226 * 176.24016 * 17 16 15 19 19 C 1.47804 * 119.99674 * 356.23667 * 17 16 15 20 20 N 1.32289 * 120.58993 * 39.05759 * 19 17 16 21 21 C 1.32698 * 121.18516 * 179.97438 * 20 19 17 22 22 C 1.35479 * 122.11508 * 0.02562 * 21 20 19 23 23 N 1.36213 * 120.52510 * 359.97438 * 22 21 20 24 24 C 1.36163 * 133.93099 * 179.97438 * 23 22 21 25 25 C 1.35345 * 107.14778 * 180.02562 * 24 23 22 26 26 N 1.33563 * 108.61006 * 359.97438 * 25 24 23 27 27 C 1.31857 * 109.14425 * 359.74295 * 26 25 24 28 28 C 1.46925 * 118.73910 * 306.39108 * 16 15 14 29 29 C 1.53043 * 109.46035 * 59.96857 * 13 2 1 30 30 H 1.08994 * 109.47121 * 59.99896 * 1 2 3 31 31 H 1.09000 * 109.46960 * 299.99915 * 1 2 3 32 32 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 33 33 H 0.96993 * 120.00431 * 95.00300 * 4 2 1 34 34 H 0.96999 * 119.99642 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45863 * 300.00083 * 13 2 1 36 36 H 1.08999 * 109.50186 * 298.57162 * 14 13 2 37 37 H 1.09005 * 109.49528 * 58.66174 * 14 13 2 38 38 H 1.09013 * 109.59756 * 294.87006 * 15 14 13 39 39 H 1.09005 * 109.70713 * 174.50996 * 15 14 13 40 40 H 1.08003 * 118.94112 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.73397 * 179.97438 * 22 21 20 42 42 H 1.07998 * 126.42958 * 0.04900 * 24 23 22 43 43 H 1.07991 * 125.69631 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.58425 * 293.81524 * 28 16 15 45 45 H 1.08997 * 109.70834 * 173.46131 * 28 16 15 46 46 H 1.09002 * 109.50197 * 301.33886 * 29 13 2 47 47 H 1.09008 * 109.49591 * 61.40073 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8921 1.0404 2.4243 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9390 3.4501 9 14 2.7893 0.2697 5.1184 10 1 1.4668 0.8064 5.5284 11 1 3.2984 -0.6487 6.1685 12 1 3.7445 1.3922 4.9377 13 6 2.0400 -0.7212 -1.2493 14 6 3.5704 -0.7217 -1.2488 15 6 4.0773 -1.4747 -2.4827 16 7 3.4748 -0.8769 -3.6819 17 6 4.2483 -0.4581 -4.7030 18 8 3.7351 -0.0283 -5.7177 19 6 5.7205 -0.5214 -4.5891 20 7 6.3066 -1.5514 -4.0010 21 6 7.6273 -1.6207 -3.8927 22 6 8.4412 -0.6499 -4.3730 23 7 7.9205 0.4455 -4.9929 24 6 8.4643 1.5561 -5.5629 25 6 7.4396 2.3099 -6.0251 26 7 6.2922 1.6840 -5.7501 27 6 6.5558 0.5502 -5.1307 28 6 2.0130 -0.7445 -3.7470 29 6 1.5291 0.0000 -2.4987 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2492 -1.6317 1.1526 34 1 3.2478 -2.3963 4.2421 35 1 1.6766 -1.7488 -1.2491 36 1 3.9346 0.3054 -1.2741 37 1 3.9337 -1.2148 -0.3471 38 1 3.7903 -2.5242 -2.4140 39 1 5.1629 -1.3959 -2.5411 40 1 8.0675 -2.4780 -3.4053 41 1 9.5114 -0.7455 -4.2634 42 1 9.5160 1.7913 -5.6333 43 1 7.5340 3.2585 -6.5325 44 1 1.5576 -1.7343 -3.7814 45 1 1.7341 -0.1828 -4.6385 46 1 0.4393 0.0207 -2.4868 47 1 1.9122 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664456957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:42 Heat of formation + Delta-G solvation = 95.798505 kcal Electronic energy + Delta-G solvation = -30165.923938 eV Core-core repulsion = 26158.147001 eV Total energy + Delta-G solvation = -4007.776937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.36246 -40.29973 -38.69368 -37.83933 -35.38261 -34.69511 -32.86572 -31.33024 -30.77269 -30.60714 -29.84703 -28.26432 -26.26603 -24.94631 -23.71744 -23.68526 -22.81457 -22.30651 -21.26533 -19.89316 -19.40952 -18.94625 -18.05885 -17.08107 -16.67741 -16.26573 -16.08291 -15.97250 -15.24783 -14.91117 -14.84872 -14.28381 -14.13022 -13.93829 -13.83905 -13.66544 -13.43470 -13.34743 -13.17139 -12.59236 -12.50494 -12.17650 -12.00291 -11.81915 -11.56669 -11.09494 -10.92988 -10.84556 -10.74530 -10.63563 -10.52767 -10.27476 -10.24989 -10.13251 -9.86983 -9.60004 -9.54511 -9.36340 -8.87601 -8.62792 -8.48892 -6.91829 -5.74616 -3.02003 -0.24086 0.80664 1.88051 2.38395 2.52640 2.73209 3.19587 3.44282 3.49079 3.49660 3.55119 3.72982 3.87637 4.18486 4.57550 4.60264 4.70766 4.87385 4.95754 5.05174 5.11595 5.17631 5.28182 5.36439 5.49566 5.56712 5.61571 5.75888 5.76653 5.88456 6.00579 6.03615 6.09992 6.10945 6.19345 6.29124 6.30521 6.38536 6.47618 6.54170 6.61127 6.72210 6.84462 6.99785 7.04656 7.17998 7.33594 7.43599 7.72351 8.02730 8.44718 9.55744 10.14688 10.49709 11.48096 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002887 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.932173 B = 9695.703397 C =10802.335764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.124 4.124 15 C 0.096 3.904 16 N -0.585 5.585 17 C 0.579 3.421 18 O -0.512 6.512 19 C 0.188 3.812 20 N -0.419 5.419 21 C 0.029 3.971 22 C 0.031 3.969 23 N -0.355 5.355 24 C -0.080 4.080 25 C 0.034 3.966 26 N -0.444 5.444 27 C 0.191 3.809 28 C 0.114 3.886 29 C -0.129 4.129 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.188 0.812 41 H 0.177 0.823 42 H 0.192 0.808 43 H 0.190 0.810 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.895 1.690 -19.153 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.110 4.110 14 C -0.162 4.162 15 C -0.026 4.026 16 N -0.317 5.317 17 C 0.363 3.637 18 O -0.386 6.386 19 C 0.022 3.978 20 N -0.134 5.134 21 C -0.111 4.111 22 C -0.094 4.094 23 N -0.029 5.029 24 C -0.214 4.214 25 C -0.118 4.118 26 N -0.163 5.163 27 C -0.057 4.057 28 C -0.008 4.008 29 C -0.167 4.167 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.205 0.795 41 H 0.194 0.806 42 H 0.209 0.791 43 H 0.206 0.794 44 H 0.090 0.910 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.567 1.573 -19.349 22.102 hybrid contribution 1.810 0.512 1.038 2.148 sum 12.376 2.086 -18.311 22.199 Atomic orbital electron populations 1.22492 0.99514 1.00755 0.99845 1.20221 0.91591 0.95306 0.86102 0.93799 1.42402 1.78091 1.10616 1.05268 1.19191 1.36115 0.93770 0.87431 0.91432 1.24692 1.02466 0.95947 0.97886 1.69642 1.51212 1.08588 1.28864 0.86318 0.77749 0.78601 0.83834 1.21379 1.21775 1.21418 1.21391 0.95014 0.99959 0.94589 1.21932 0.96024 1.00811 0.97473 1.22340 0.99810 0.97223 0.83258 1.47983 1.07171 1.59120 1.17428 1.17205 0.83676 0.78761 0.84070 1.90844 1.72964 1.45697 1.29115 1.22110 0.94662 0.87632 0.93350 1.68328 1.11952 1.21678 1.11477 1.22236 0.88219 0.99408 1.01191 1.22766 1.01965 0.86846 0.97792 1.42864 1.09161 1.15019 1.35901 1.22817 1.01349 0.88845 1.08354 1.22884 0.86824 1.00794 1.01323 1.70600 1.27678 1.03348 1.14712 1.22473 0.81219 0.97387 1.04589 1.21730 0.78000 1.01216 0.99820 1.22036 1.01265 0.99698 0.93721 0.94244 0.93093 0.93571 0.78327 0.93585 0.91248 0.92335 0.88952 0.90744 0.88106 0.79518 0.80573 0.79148 0.79353 0.91035 0.89045 0.90126 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.14 37.16 0.34 -2.61 16 2 C 0.18 3.42 2.47 -67.93 -0.17 3.25 16 3 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -17.40 4.41 -53.42 -0.24 -17.63 16 5 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 9 Si 0.90 22.24 29.55 -169.99 -5.02 17.21 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C -0.09 -1.42 1.79 -90.58 -0.16 -1.58 16 14 C -0.12 -1.97 5.22 -26.62 -0.14 -2.11 16 15 C 0.10 1.31 6.05 -3.71 -0.02 1.29 16 16 N -0.58 -8.33 2.97 -173.90 -0.52 -8.84 16 17 C 0.58 9.14 7.51 -12.35 -0.09 9.04 16 18 O -0.51 -9.39 16.39 5.32 0.09 -9.31 16 19 C 0.19 2.65 6.23 -80.53 -0.50 2.15 16 20 N -0.42 -4.91 7.35 -8.67 -0.06 -4.97 16 21 C 0.03 0.23 11.01 -18.16 -0.20 0.03 16 22 C 0.03 0.22 11.00 -16.59 -0.18 0.04 16 23 N -0.36 -3.59 2.95 -61.12 -0.18 -3.77 16 24 C -0.08 -0.64 11.80 -16.66 -0.20 -0.84 16 25 C 0.03 0.34 11.84 -17.83 -0.21 0.13 16 26 N -0.44 -6.50 11.29 -11.28 -0.13 -6.63 16 27 C 0.19 2.65 7.72 -153.97 -1.19 1.46 16 28 C 0.11 1.49 6.42 -3.71 -0.02 1.46 16 29 C -0.13 -1.74 5.04 -26.61 -0.13 -1.87 16 30 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.38 9.76 7.58 -40.82 -0.31 9.45 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.69 7.41 -51.93 -0.38 1.30 16 38 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.10 1.35 4.54 -51.93 -0.24 1.11 16 40 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.19 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.22 7.03 -51.93 -0.37 0.86 16 46 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 47 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -35.31 380.72 -9.30 -44.61 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.57 Total: 7.62 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.13 Total: 2.84 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: -0.40 Total: -68.72 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.31 -9.30 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664456957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.408 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds