Wall clock time and date at job start Wed Apr 1 2020 02:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46425 * 2 1 4 4 N 1.46497 * 109.47198 * 120.00140 * 2 1 3 5 5 C 1.36940 * 119.99856 * 274.99691 * 4 2 1 6 6 H 1.08003 * 120.00186 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99873 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99925 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99752 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47132 * 60.00746 * 9 7 5 11 11 H 1.48502 * 109.46977 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47688 * 300.00469 * 9 7 5 13 13 C 1.53001 * 109.46958 * 240.00184 * 2 1 3 14 14 C 1.53034 * 109.46053 * 180.02562 * 13 2 1 15 15 C 1.53187 * 109.31570 * 178.60174 * 14 13 2 16 16 N 1.46925 * 108.76705 * 54.65554 * 15 14 13 17 17 C 1.34772 * 120.63213 * 126.40665 * 16 15 14 18 18 O 1.21554 * 120.00226 * 176.24016 * 17 16 15 19 19 C 1.47804 * 119.99674 * 356.23667 * 17 16 15 20 20 N 1.32289 * 120.58993 * 39.05759 * 19 17 16 21 21 C 1.32698 * 121.18516 * 179.97438 * 20 19 17 22 22 C 1.35479 * 122.11508 * 0.02562 * 21 20 19 23 23 N 1.36213 * 120.52510 * 359.97438 * 22 21 20 24 24 C 1.36163 * 133.93099 * 179.97438 * 23 22 21 25 25 C 1.35345 * 107.14778 * 180.02562 * 24 23 22 26 26 N 1.33563 * 108.61006 * 359.97438 * 25 24 23 27 27 C 1.31857 * 109.14425 * 359.74295 * 26 25 24 28 28 C 1.46925 * 118.73910 * 306.39108 * 16 15 14 29 29 C 1.53043 * 109.46035 * 59.96857 * 13 2 1 30 30 H 1.08994 * 109.47121 * 59.99896 * 1 2 3 31 31 H 1.09000 * 109.46960 * 299.99915 * 1 2 3 32 32 H 1.09000 * 109.46708 * 180.02562 * 1 2 3 33 33 H 0.96993 * 120.00431 * 95.00300 * 4 2 1 34 34 H 0.96999 * 119.99642 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45863 * 300.00083 * 13 2 1 36 36 H 1.08999 * 109.50186 * 298.57162 * 14 13 2 37 37 H 1.09005 * 109.49528 * 58.66174 * 14 13 2 38 38 H 1.09013 * 109.59756 * 294.87006 * 15 14 13 39 39 H 1.09005 * 109.70713 * 174.50996 * 15 14 13 40 40 H 1.08003 * 118.94112 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.73397 * 179.97438 * 22 21 20 42 42 H 1.07998 * 126.42958 * 0.04900 * 24 23 22 43 43 H 1.07991 * 125.69631 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.58425 * 293.81524 * 28 16 15 45 45 H 1.08997 * 109.70834 * 173.46131 * 28 16 15 46 46 H 1.09002 * 109.50197 * 301.33886 * 29 13 2 47 47 H 1.09008 * 109.49591 * 61.40073 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1493 -0.0075 2.3757 6 1 1.8921 1.0404 2.4243 7 6 2.6115 -0.6620 3.5092 8 7 2.9245 -1.9390 3.4501 9 14 2.7893 0.2697 5.1184 10 1 1.4668 0.8064 5.5284 11 1 3.2984 -0.6487 6.1685 12 1 3.7445 1.3922 4.9377 13 6 2.0400 -0.7212 -1.2493 14 6 3.5704 -0.7217 -1.2488 15 6 4.0773 -1.4747 -2.4827 16 7 3.4748 -0.8769 -3.6819 17 6 4.2483 -0.4581 -4.7030 18 8 3.7351 -0.0283 -5.7177 19 6 5.7205 -0.5214 -4.5891 20 7 6.3066 -1.5514 -4.0010 21 6 7.6273 -1.6207 -3.8927 22 6 8.4412 -0.6499 -4.3730 23 7 7.9205 0.4455 -4.9929 24 6 8.4643 1.5561 -5.5629 25 6 7.4396 2.3099 -6.0251 26 7 6.2922 1.6840 -5.7501 27 6 6.5558 0.5502 -5.1307 28 6 2.0130 -0.7445 -3.7470 29 6 1.5291 0.0000 -2.4987 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2492 -1.6317 1.1526 34 1 3.2478 -2.3963 4.2421 35 1 1.6766 -1.7488 -1.2491 36 1 3.9346 0.3054 -1.2741 37 1 3.9337 -1.2148 -0.3471 38 1 3.7903 -2.5242 -2.4140 39 1 5.1629 -1.3959 -2.5411 40 1 8.0675 -2.4780 -3.4053 41 1 9.5114 -0.7455 -4.2634 42 1 9.5160 1.7913 -5.6333 43 1 7.5340 3.2585 -6.5325 44 1 1.5576 -1.7343 -3.7814 45 1 1.7341 -0.1828 -4.6385 46 1 0.4393 0.0207 -2.4868 47 1 1.9122 1.0205 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664456957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:41 Heat of formation + Delta-G solvation = 73.042038 kcal Electronic energy + Delta-G solvation = -30166.910732 eV Core-core repulsion = 26158.147001 eV Total energy + Delta-G solvation = -4008.763731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.09944 -41.40896 -39.54531 -39.11774 -36.89727 -35.52548 -34.58662 -32.61293 -32.10578 -31.58573 -30.64086 -29.90605 -27.27417 -26.33169 -25.28710 -24.46818 -24.00873 -23.23374 -22.40932 -21.25430 -20.61630 -19.70528 -19.27687 -18.81429 -17.59257 -17.16265 -17.11877 -16.79182 -16.58950 -16.21552 -15.65817 -15.63611 -15.49115 -15.21829 -14.92894 -14.81874 -14.58938 -14.37781 -14.21837 -14.13636 -13.75841 -13.55143 -13.31510 -12.98738 -12.85656 -12.73217 -12.69368 -12.29899 -12.21150 -12.09961 -11.83946 -11.60872 -11.56991 -11.41756 -11.29604 -11.20096 -10.92006 -10.66087 -10.11480 -9.73000 -9.25010 -8.93183 -7.89484 -5.15628 -1.01772 0.08247 1.12892 1.46779 1.47856 1.49532 1.55535 1.77591 1.80225 2.35231 2.58753 2.70499 2.92381 3.20631 3.43616 3.60876 3.76794 3.83980 3.86329 3.93757 4.09258 4.17169 4.26888 4.31961 4.34941 4.39187 4.48941 4.57196 4.59649 4.70991 4.80651 4.87272 4.89987 4.95273 5.02973 5.05259 5.11425 5.15276 5.26874 5.32940 5.41394 5.48464 5.52534 5.60984 5.67550 5.69660 6.17742 6.33421 6.34136 6.68596 6.91063 7.39843 8.17677 8.41835 9.33548 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.002887 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.932173 B = 9695.703397 C =10802.335764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.030 0.970 4 N -0.730 5.730 5 C -0.234 4.234 6 H 0.067 0.933 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.964 3.036 10 H -0.282 1.282 11 H -0.295 1.295 12 H -0.282 1.282 13 C -0.080 4.080 14 C -0.115 4.115 15 C 0.107 3.893 16 N -0.585 5.585 17 C 0.576 3.424 18 O -0.552 6.552 19 C 0.140 3.860 20 N -0.420 5.420 21 C 0.007 3.993 22 C 0.060 3.940 23 N -0.359 5.359 24 C -0.058 4.058 25 C 0.012 3.988 26 N -0.501 5.501 27 C 0.159 3.841 28 C 0.113 3.887 29 C -0.117 4.117 30 H 0.073 0.927 31 H 0.029 0.971 32 H 0.046 0.954 33 H 0.374 0.626 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.226 0.774 41 H 0.233 0.767 42 H 0.243 0.757 43 H 0.215 0.785 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 1.748 -19.688 24.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.048 0.952 4 N -0.371 5.371 5 C -0.366 4.366 6 H 0.085 0.915 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.794 3.206 10 H -0.209 1.209 11 H -0.221 1.221 12 H -0.208 1.208 13 C -0.099 4.099 14 C -0.153 4.153 15 C -0.015 4.015 16 N -0.316 5.316 17 C 0.362 3.638 18 O -0.429 6.429 19 C -0.024 4.024 20 N -0.135 5.135 21 C -0.133 4.133 22 C -0.065 4.065 23 N -0.034 5.034 24 C -0.191 4.191 25 C -0.138 4.138 26 N -0.222 5.222 27 C -0.087 4.087 28 C -0.008 4.008 29 C -0.156 4.156 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.242 0.758 41 H 0.250 0.750 42 H 0.259 0.741 43 H 0.231 0.769 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.785 1.671 -19.907 23.718 hybrid contribution 1.274 0.541 1.144 1.796 sum 14.059 2.212 -18.763 23.550 Atomic orbital electron populations 1.22352 0.97792 1.00993 1.00527 1.20420 0.92674 0.94512 0.85896 0.95181 1.42536 1.78347 1.10253 1.05943 1.19506 1.34651 0.93891 0.88590 0.91471 1.25397 1.03304 0.96832 1.00906 1.69785 1.52760 1.09890 1.29256 0.85354 0.77748 0.77402 0.80123 1.20866 1.22133 1.20800 1.21272 0.94753 0.99998 0.93909 1.21778 0.96242 0.99800 0.97526 1.22235 1.00146 0.97166 0.81903 1.48053 1.07603 1.58813 1.17171 1.17562 0.84879 0.77810 0.83593 1.90791 1.74102 1.47511 1.30492 1.21668 0.93762 0.89638 0.97334 1.68193 1.14208 1.20805 1.10328 1.22977 0.87009 1.01284 1.02037 1.23700 1.04331 0.84573 0.93910 1.43207 1.08061 1.16207 1.35888 1.23627 1.02913 0.87010 1.05507 1.23525 0.86370 1.02070 1.01875 1.70506 1.30436 1.04756 1.16508 1.22422 0.83053 0.97536 1.05725 1.21803 0.77676 1.02150 0.99198 1.21945 1.02318 0.98729 0.92586 0.90805 0.95147 0.93505 0.79352 0.94154 0.90725 0.93962 0.91510 0.89611 0.87589 0.75764 0.75035 0.74102 0.76867 0.89094 0.89431 0.88120 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.14 71.98 0.66 -4.78 16 2 C 0.17 6.70 2.47 45.00 0.11 6.81 16 3 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 4 N -0.73 -35.79 4.41 -322.92 -1.42 -37.22 16 5 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 6 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 7 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 8 N -0.97 -57.96 13.06 21.65 0.28 -57.67 16 9 Si 0.96 46.07 29.55 68.60 2.03 48.10 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C -0.08 -2.51 1.79 -10.77 -0.02 -2.53 16 14 C -0.11 -3.75 5.22 30.67 0.16 -3.59 16 15 C 0.11 2.97 6.05 86.36 0.52 3.49 16 16 N -0.58 -17.00 2.97 -822.37 -2.44 -19.45 16 17 C 0.58 19.05 7.51 86.78 0.65 19.70 16 18 O -0.55 -21.50 16.39 -3.88 -0.06 -21.57 16 19 C 0.14 4.04 6.23 43.70 0.27 4.32 16 20 N -0.42 -9.58 7.35 -181.36 -1.33 -10.91 16 21 C 0.01 0.10 11.01 83.92 0.92 1.02 16 22 C 0.06 0.60 11.00 83.37 0.92 1.52 16 23 N -0.36 -6.38 2.95 -347.28 -1.02 -7.41 16 24 C -0.06 -0.74 11.80 83.35 0.98 0.24 16 25 C 0.01 0.23 11.84 83.76 0.99 1.23 16 26 N -0.50 -15.15 11.29 -189.60 -2.14 -17.29 16 27 C 0.16 4.48 7.72 135.58 1.05 5.52 16 28 C 0.11 2.92 6.42 86.36 0.55 3.47 16 29 C -0.12 -3.09 5.04 30.67 0.15 -2.93 16 30 H 0.07 2.04 6.40 -2.39 -0.02 2.02 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.37 19.51 7.58 -92.71 -0.70 18.81 16 34 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 2.53 7.41 -2.38 -0.02 2.52 16 38 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.11 2.86 4.54 -2.38 -0.01 2.85 16 40 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 41 H 0.23 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.24 0.34 8.06 -2.91 -0.02 0.31 16 43 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 44 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.09 2.38 7.03 -2.39 -0.02 2.36 16 46 H 0.10 2.25 6.36 -2.39 -0.02 2.24 16 47 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -82.22 380.72 3.41 -78.81 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.30 Total: 26.82 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 9.23 Total: 17.79 kcal Atomic # 7 Polarization: -141.87 SS G_CDS: -8.08 Total: -149.95 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -82.22 3.41 -78.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664456957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.852 kcal (2) G-P(sol) polarization free energy of solvation -82.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds