Wall clock time and date at job start Wed Apr 1 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 N 1.46500 * 109.46783 * 119.99364 * 2 1 3 5 5 C 1.36938 * 120.00559 * 275.00151 * 4 2 1 6 6 H 1.07996 * 119.99768 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00218 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00132 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99873 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47478 * 89.99636 * 9 7 5 11 11 H 1.48503 * 109.47206 * 209.99770 * 9 7 5 12 12 H 1.48497 * 109.47248 * 329.99352 * 9 7 5 13 13 C 1.52991 * 109.47345 * 239.99812 * 2 1 3 14 14 C 1.53034 * 109.46168 * 60.00275 * 13 2 1 15 15 C 1.53200 * 109.31520 * 181.38586 * 14 13 2 16 16 N 1.46923 * 108.77241 * 305.36355 * 15 14 13 17 17 C 1.34775 * 120.63285 * 233.58277 * 16 15 14 18 18 O 1.21762 * 119.99705 * 7.00683 * 17 16 15 19 19 C 1.46189 * 120.00360 * 187.00483 * 17 16 15 20 20 C 1.38719 * 126.76169 * 24.83108 * 19 17 16 21 21 N 1.32281 * 108.17620 * 180.02562 * 20 19 17 22 22 C 1.33134 * 109.71687 * 0.02562 * 21 20 19 23 23 C 1.40625 * 132.29165 * 180.28832 * 22 21 20 24 24 C 1.36304 * 119.22501 * 180.17844 * 23 22 21 25 25 C 1.39874 * 120.11825 * 359.50353 * 24 23 22 26 26 N 1.30800 * 120.78035 * 0.25724 * 25 24 23 27 27 N 1.36652 * 108.62598 * 359.97438 * 22 21 20 28 28 C 1.46930 * 118.73796 * 53.86101 * 16 15 14 29 29 C 1.53050 * 109.46020 * 180.02562 * 13 2 1 30 30 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47630 * 300.00334 * 1 2 3 32 32 H 1.09007 * 109.46967 * 60.00086 * 1 2 3 33 33 H 0.97005 * 119.99971 * 95.00193 * 4 2 1 34 34 H 0.96998 * 120.00452 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.45153 * 300.03099 * 13 2 1 36 36 H 1.08996 * 109.50024 * 61.43271 * 14 13 2 37 37 H 1.08997 * 109.49881 * 301.33486 * 14 13 2 38 38 H 1.09002 * 109.58667 * 185.57677 * 15 14 13 39 39 H 1.09000 * 109.70108 * 65.21916 * 15 14 13 40 40 H 1.08000 * 125.91758 * 0.02562 * 20 19 17 41 41 H 1.08007 * 120.38594 * 359.93135 * 23 22 21 42 42 H 1.08002 * 119.94476 * 179.78136 * 24 23 22 43 43 H 1.08003 * 119.60884 * 180.23820 * 25 24 23 44 44 H 1.08996 * 109.58957 * 65.92449 * 28 16 15 45 45 H 1.09003 * 109.58113 * 186.35075 * 28 16 15 46 46 H 1.08992 * 109.49294 * 298.56612 * 29 13 2 47 47 H 1.08998 * 109.49292 * 58.62649 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3759 6 1 1.8918 1.0404 2.4244 7 6 2.6111 -0.6618 3.5094 8 7 2.7363 -0.0053 4.6433 9 14 3.0553 -2.4742 3.4256 10 1 4.4882 -2.6165 3.0624 11 1 2.8152 -3.1045 4.7486 12 1 2.2157 -3.1427 2.3993 13 6 2.0400 -0.7212 -1.2491 14 6 1.5299 0.0003 -2.4985 15 6 2.0137 -0.7444 -3.7469 16 7 3.4754 -0.8772 -3.6813 17 6 4.2495 -0.4587 -4.7022 18 8 3.7530 0.1493 -5.6331 19 6 5.6850 -0.7346 -4.6919 20 6 6.3275 -1.7659 -4.0226 21 7 7.6244 -1.6704 -4.2651 22 6 7.8573 -0.6272 -5.0589 23 6 9.0404 -0.1012 -5.6075 24 6 8.9717 1.0051 -6.4008 25 6 7.7346 1.5994 -6.6708 26 7 6.6321 1.1093 -6.1656 27 7 6.6661 -0.0213 -5.3441 28 6 4.0770 -1.4807 -2.4843 29 6 3.5705 -0.7216 -1.2485 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2489 -1.6317 1.1528 34 1 3.0596 -0.4625 5.4353 35 1 1.6761 -1.7487 -1.2491 36 1 1.9138 1.0204 -2.5118 37 1 0.4402 0.0214 -2.4871 38 1 1.7375 -0.1812 -4.6383 39 1 1.5581 -1.7340 -3.7840 40 1 5.8514 -2.5168 -3.4096 41 1 9.9929 -0.5660 -5.3995 42 1 9.8735 1.4209 -6.8254 43 1 7.6892 2.4735 -7.3035 44 1 3.7862 -2.5290 -2.4181 45 1 5.1627 -1.4034 -2.5427 46 1 3.9345 0.3054 -1.2739 47 1 3.9337 -1.2141 -0.3465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664457515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:46 Heat of formation + Delta-G solvation = 115.619762 kcal Electronic energy + Delta-G solvation = -30059.425053 eV Core-core repulsion = 26052.507630 eV Total energy + Delta-G solvation = -4006.917423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.98089 -40.18203 -38.42143 -37.91596 -35.60499 -34.03938 -33.08231 -31.81413 -31.39711 -30.94386 -29.84141 -28.63625 -25.87789 -25.35453 -24.18906 -23.34160 -22.92337 -22.33911 -21.16762 -20.07353 -19.66696 -18.10570 -17.91185 -17.65984 -17.24043 -16.62706 -16.08507 -15.92938 -15.25361 -14.92376 -14.57341 -14.24381 -14.17113 -14.13848 -13.81553 -13.57792 -13.36665 -13.33999 -13.13546 -12.72781 -12.53104 -12.40700 -12.20970 -11.75495 -11.60418 -11.56436 -11.38484 -11.13770 -10.95613 -10.81216 -10.50295 -10.40176 -10.31923 -10.11283 -10.01324 -9.91565 -9.72406 -9.56422 -8.93052 -8.79983 -8.52853 -7.25345 -5.75947 -3.10990 -0.06205 0.46531 1.30356 1.91875 2.73164 2.84323 3.03037 3.36736 3.38579 3.45272 3.55895 3.68774 4.03717 4.32698 4.35493 4.59184 4.67246 4.73430 4.79819 4.89571 4.97163 5.05636 5.16742 5.24069 5.26197 5.30183 5.40336 5.45865 5.58346 5.63723 5.73910 5.74961 5.82907 5.90894 5.94527 6.01411 6.13113 6.20641 6.33195 6.36853 6.42501 6.54495 6.61625 6.85999 7.03984 7.04800 7.17842 7.21939 7.98408 8.01164 8.43331 9.22242 9.94654 10.14853 11.42742 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.002837 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.997489 B = 9867.482893 C =10969.084843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.053 0.947 4 N -0.747 5.747 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.094 4.094 14 C -0.128 4.128 15 C 0.117 3.883 16 N -0.595 5.595 17 C 0.593 3.407 18 O -0.530 6.530 19 C -0.052 4.052 20 C 0.071 3.929 21 N -0.460 5.460 22 C 0.178 3.822 23 C -0.008 4.008 24 C -0.171 4.171 25 C 0.126 3.874 26 N -0.238 5.238 27 N -0.237 5.237 28 C 0.082 3.918 29 C -0.123 4.123 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.207 0.793 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.203 0.797 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -1.157 -25.093 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.071 0.929 4 N -0.390 5.390 5 C -0.369 4.369 6 H 0.106 0.894 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.113 4.113 14 C -0.166 4.166 15 C -0.005 4.005 16 N -0.328 5.328 17 C 0.380 3.620 18 O -0.406 6.406 19 C -0.173 4.173 20 C -0.090 4.090 21 N -0.180 5.180 22 C -0.067 4.067 23 C -0.036 4.036 24 C -0.198 4.198 25 C -0.066 4.066 26 N -0.049 5.049 27 N -0.007 5.007 28 C -0.041 4.041 29 C -0.161 4.161 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.192 0.808 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.224 0.776 41 H 0.184 0.816 42 H 0.178 0.822 43 H 0.219 0.781 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.745 -0.897 -25.155 26.992 hybrid contribution 0.595 -0.976 0.016 1.143 sum 10.340 -1.873 -25.139 27.247 Atomic orbital electron populations 1.22465 0.99014 1.00777 1.00405 1.20183 0.91786 0.95630 0.85035 0.92857 1.42782 1.79807 1.09253 1.07152 1.19060 1.36589 0.95451 0.85753 0.89365 1.24665 1.01645 0.97401 0.95561 1.69698 1.52853 1.35573 1.00281 0.86578 0.78428 0.86881 0.76818 1.21050 1.21893 1.20306 1.21442 0.94924 0.99996 0.94975 1.22010 1.01338 0.99810 0.93445 1.21695 0.77835 1.01034 0.99929 1.47793 1.07222 1.60971 1.16830 1.16480 0.83443 0.79298 0.82744 1.90860 1.74293 1.40171 1.35313 1.20886 0.90715 0.99323 1.06364 1.23606 0.88974 0.97746 0.98701 1.70460 1.16907 1.15829 1.14803 1.21310 0.87787 0.95180 1.02423 1.20655 0.96280 0.94010 0.92609 1.21598 0.99657 0.97213 1.01287 1.24319 0.88619 0.98634 0.95031 1.76128 1.26034 0.97219 1.05474 1.46586 1.07473 1.17402 1.29213 1.22631 0.99396 0.97495 0.84529 1.21977 0.96067 1.01340 0.96744 0.93680 0.92555 0.93961 0.80757 0.93124 0.91287 0.91392 0.90038 0.89038 0.91159 0.77640 0.81640 0.82198 0.78056 0.90552 0.88588 0.91446 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.18 3.30 2.47 -67.94 -0.17 3.13 16 3 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.75 -16.70 4.21 -53.43 -0.22 -16.93 16 5 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 7 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 8 N -0.94 -29.19 13.97 55.49 0.78 -28.42 16 9 Si 0.88 21.59 27.74 -169.99 -4.71 16.87 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 13 C -0.09 -1.33 1.79 -90.58 -0.16 -1.49 16 14 C -0.13 -1.56 5.04 -26.61 -0.13 -1.69 16 15 C 0.12 1.36 6.44 -3.71 -0.02 1.34 16 16 N -0.59 -7.48 2.97 -174.21 -0.52 -8.00 16 17 C 0.59 8.79 7.63 -13.07 -0.10 8.69 16 18 O -0.53 -9.42 16.54 5.13 0.08 -9.34 16 19 C -0.05 -0.71 6.68 -81.85 -0.55 -1.26 16 20 C 0.07 0.83 9.52 -17.18 -0.16 0.67 16 21 N -0.46 -5.81 11.25 -12.24 -0.14 -5.94 16 22 C 0.18 2.08 7.85 -156.07 -1.23 0.85 16 23 C -0.01 -0.06 10.11 -39.38 -0.40 -0.45 16 24 C -0.17 -0.83 10.03 -39.67 -0.40 -1.22 16 25 C 0.13 0.84 11.30 -17.38 -0.20 0.65 16 26 N -0.24 -2.91 11.94 30.62 0.37 -2.54 16 27 N -0.24 -3.20 4.05 -8.68 -0.04 -3.24 16 28 C 0.08 0.92 5.18 -3.48 -0.02 0.90 16 29 C -0.12 -1.73 5.24 -26.38 -0.14 -1.86 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.59 6.40 -51.92 -0.33 0.25 16 33 H 0.36 7.87 5.44 -40.82 -0.22 7.64 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.91 6.36 -51.93 -0.33 0.58 16 38 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.21 1.80 6.04 -52.49 -0.32 1.49 16 41 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.16 0.11 8.06 -52.49 -0.42 -0.31 16 43 H 0.20 0.45 8.06 -52.48 -0.42 0.03 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 1.03 3.95 -51.93 -0.21 0.82 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.37 7.40 -51.93 -0.38 0.98 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -37.55 375.92 -8.72 -46.27 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.39 Total: 6.53 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.59 Total: -0.93 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: 0.23 Total: -65.06 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.55 -8.72 -46.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664457515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.885 kcal (2) G-P(sol) polarization free energy of solvation -37.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds