Wall clock time and date at job start Wed Apr 1 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 N 1.46500 * 109.46783 * 119.99364 * 2 1 3 5 5 C 1.36938 * 120.00559 * 275.00151 * 4 2 1 6 6 H 1.07996 * 119.99768 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00218 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00132 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99873 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47478 * 89.99636 * 9 7 5 11 11 H 1.48503 * 109.47206 * 209.99770 * 9 7 5 12 12 H 1.48497 * 109.47248 * 329.99352 * 9 7 5 13 13 C 1.52991 * 109.47345 * 239.99812 * 2 1 3 14 14 C 1.53034 * 109.46168 * 60.00275 * 13 2 1 15 15 C 1.53200 * 109.31520 * 181.38586 * 14 13 2 16 16 N 1.46923 * 108.77241 * 305.36355 * 15 14 13 17 17 C 1.34775 * 120.63285 * 233.58277 * 16 15 14 18 18 O 1.21762 * 119.99705 * 7.00683 * 17 16 15 19 19 C 1.46189 * 120.00360 * 187.00483 * 17 16 15 20 20 C 1.38719 * 126.76169 * 24.83108 * 19 17 16 21 21 N 1.32281 * 108.17620 * 180.02562 * 20 19 17 22 22 C 1.33134 * 109.71687 * 0.02562 * 21 20 19 23 23 C 1.40625 * 132.29165 * 180.28832 * 22 21 20 24 24 C 1.36304 * 119.22501 * 180.17844 * 23 22 21 25 25 C 1.39874 * 120.11825 * 359.50353 * 24 23 22 26 26 N 1.30800 * 120.78035 * 0.25724 * 25 24 23 27 27 N 1.36652 * 108.62598 * 359.97438 * 22 21 20 28 28 C 1.46930 * 118.73796 * 53.86101 * 16 15 14 29 29 C 1.53050 * 109.46020 * 180.02562 * 13 2 1 30 30 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47630 * 300.00334 * 1 2 3 32 32 H 1.09007 * 109.46967 * 60.00086 * 1 2 3 33 33 H 0.97005 * 119.99971 * 95.00193 * 4 2 1 34 34 H 0.96998 * 120.00452 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.45153 * 300.03099 * 13 2 1 36 36 H 1.08996 * 109.50024 * 61.43271 * 14 13 2 37 37 H 1.08997 * 109.49881 * 301.33486 * 14 13 2 38 38 H 1.09002 * 109.58667 * 185.57677 * 15 14 13 39 39 H 1.09000 * 109.70108 * 65.21916 * 15 14 13 40 40 H 1.08000 * 125.91758 * 0.02562 * 20 19 17 41 41 H 1.08007 * 120.38594 * 359.93135 * 23 22 21 42 42 H 1.08002 * 119.94476 * 179.78136 * 24 23 22 43 43 H 1.08003 * 119.60884 * 180.23820 * 25 24 23 44 44 H 1.08996 * 109.58957 * 65.92449 * 28 16 15 45 45 H 1.09003 * 109.58113 * 186.35075 * 28 16 15 46 46 H 1.08992 * 109.49294 * 298.56612 * 29 13 2 47 47 H 1.08998 * 109.49292 * 58.62649 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3759 6 1 1.8918 1.0404 2.4244 7 6 2.6111 -0.6618 3.5094 8 7 2.7363 -0.0053 4.6433 9 14 3.0553 -2.4742 3.4256 10 1 4.4882 -2.6165 3.0624 11 1 2.8152 -3.1045 4.7486 12 1 2.2157 -3.1427 2.3993 13 6 2.0400 -0.7212 -1.2491 14 6 1.5299 0.0003 -2.4985 15 6 2.0137 -0.7444 -3.7469 16 7 3.4754 -0.8772 -3.6813 17 6 4.2495 -0.4587 -4.7022 18 8 3.7530 0.1493 -5.6331 19 6 5.6850 -0.7346 -4.6919 20 6 6.3275 -1.7659 -4.0226 21 7 7.6244 -1.6704 -4.2651 22 6 7.8573 -0.6272 -5.0589 23 6 9.0404 -0.1012 -5.6075 24 6 8.9717 1.0051 -6.4008 25 6 7.7346 1.5994 -6.6708 26 7 6.6321 1.1093 -6.1656 27 7 6.6661 -0.0213 -5.3441 28 6 4.0770 -1.4807 -2.4843 29 6 3.5705 -0.7216 -1.2485 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2489 -1.6317 1.1528 34 1 3.0596 -0.4625 5.4353 35 1 1.6761 -1.7487 -1.2491 36 1 1.9138 1.0204 -2.5118 37 1 0.4402 0.0214 -2.4871 38 1 1.7375 -0.1812 -4.6383 39 1 1.5581 -1.7340 -3.7840 40 1 5.8514 -2.5168 -3.4096 41 1 9.9929 -0.5660 -5.3995 42 1 9.8735 1.4209 -6.8254 43 1 7.6892 2.4735 -7.3035 44 1 3.7862 -2.5290 -2.4181 45 1 5.1627 -1.4034 -2.5427 46 1 3.9345 0.3054 -1.2739 47 1 3.9337 -1.2141 -0.3465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664457515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:45 Heat of formation + Delta-G solvation = 89.024218 kcal Electronic energy + Delta-G solvation = -30060.578322 eV Core-core repulsion = 26052.507630 eV Total energy + Delta-G solvation = -4008.070692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.75722 -41.20340 -39.26746 -39.00006 -37.02613 -34.74506 -34.68974 -33.09735 -32.39566 -32.13424 -30.99948 -29.94938 -26.97433 -26.18819 -25.47808 -24.51459 -23.94988 -23.33909 -22.26648 -21.44406 -20.77616 -19.57666 -18.88893 -18.54230 -18.24291 -17.45993 -16.97713 -16.71847 -16.61022 -16.17983 -16.01361 -15.37733 -15.18679 -15.18017 -14.80337 -14.75280 -14.57472 -14.36950 -14.17229 -13.87115 -13.83405 -13.69853 -13.36797 -13.03792 -12.92203 -12.77842 -12.42468 -12.33448 -12.22872 -12.18801 -12.00998 -11.81382 -11.53605 -11.40635 -11.28148 -11.20737 -11.01526 -10.91348 -10.58059 -9.80705 -9.35615 -9.24889 -7.97948 -5.30314 -0.62333 -0.28245 0.57743 1.14505 1.40878 1.45484 1.52680 1.79276 2.04932 2.20649 2.53095 2.88744 3.02097 3.33959 3.45416 3.55670 3.61645 3.78357 3.79635 3.84282 3.99236 4.11870 4.14237 4.22344 4.34695 4.38745 4.49206 4.53652 4.56493 4.74653 4.76721 4.78820 4.82299 4.86182 4.90157 5.01120 5.06239 5.09034 5.11123 5.22502 5.28586 5.32443 5.46940 5.53765 5.66063 5.82116 6.19308 6.26364 6.35404 6.39716 6.95698 7.13775 7.90206 8.11011 9.24344 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.002837 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.997489 B = 9867.482893 C =10969.084843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.028 0.972 4 N -0.746 5.746 5 C -0.222 4.222 6 H 0.048 0.952 7 C -0.070 4.070 8 N -0.991 5.991 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.303 1.303 12 H -0.245 1.245 13 C -0.083 4.083 14 C -0.118 4.118 15 C 0.118 3.882 16 N -0.591 5.591 17 C 0.592 3.408 18 O -0.572 6.572 19 C -0.096 4.096 20 C 0.079 3.921 21 N -0.488 5.488 22 C 0.172 3.828 23 C -0.030 4.030 24 C -0.139 4.139 25 C 0.136 3.864 26 N -0.300 5.300 27 N -0.254 5.254 28 C 0.089 3.911 29 C -0.121 4.121 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.195 0.805 42 H 0.214 0.786 43 H 0.246 0.754 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.042 0.958 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -2.966 -27.848 30.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.046 0.954 4 N -0.389 5.389 5 C -0.353 4.353 6 H 0.066 0.934 7 C -0.261 4.261 8 N -0.642 5.642 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.230 1.230 12 H -0.169 1.169 13 C -0.102 4.102 14 C -0.157 4.157 15 C -0.004 4.004 16 N -0.323 5.323 17 C 0.380 3.620 18 O -0.453 6.453 19 C -0.216 4.216 20 C -0.082 4.082 21 N -0.208 5.208 22 C -0.074 4.074 23 C -0.057 4.057 24 C -0.164 4.164 25 C -0.054 4.054 26 N -0.111 5.111 27 N -0.022 5.022 28 C -0.033 4.033 29 C -0.160 4.160 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.201 0.799 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.246 0.754 41 H 0.212 0.788 42 H 0.231 0.769 43 H 0.262 0.738 44 H 0.128 0.872 45 H 0.119 0.881 46 H 0.061 0.939 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.225 -2.716 -27.958 30.249 hybrid contribution 0.246 -0.152 0.748 0.802 sum 11.471 -2.868 -27.210 29.668 Atomic orbital electron populations 1.22342 0.97450 1.01551 1.00502 1.20392 0.92800 0.94617 0.85311 0.95397 1.42716 1.80015 1.09475 1.06738 1.18966 1.34628 0.94036 0.87667 0.93439 1.25532 1.02608 1.02863 0.95049 1.69904 1.55098 1.37901 1.01282 0.85393 0.78870 0.80427 0.77026 1.20102 1.22986 1.16886 1.21332 0.94848 1.00618 0.93394 1.21930 1.02315 0.98627 0.92802 1.21767 0.77453 1.02275 0.98861 1.47858 1.07539 1.60324 1.16579 1.16713 0.84097 0.78619 0.82548 1.90813 1.75131 1.42330 1.37001 1.20899 0.90549 1.01193 1.08927 1.23969 0.88818 0.97400 0.98015 1.70466 1.17183 1.16963 1.16206 1.22124 0.88828 0.94686 1.01751 1.21217 0.95892 0.95236 0.93386 1.22221 1.00627 0.95111 0.98485 1.25286 0.88245 0.98721 0.93184 1.76125 1.29222 0.98196 1.07601 1.46745 1.07756 1.18041 1.29695 1.22685 0.99704 0.98481 0.82416 1.21908 0.96104 1.00256 0.97701 0.92461 0.95653 0.90736 0.79923 0.93566 0.89174 0.93262 0.88181 0.90019 0.88317 0.75370 0.78761 0.76889 0.73825 0.87215 0.88092 0.93919 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 9.14 71.98 0.66 -4.48 16 2 C 0.18 6.31 2.47 44.99 0.11 6.42 16 3 H 0.03 1.14 8.08 -2.39 -0.02 1.12 16 4 N -0.75 -33.03 4.21 -322.96 -1.36 -34.39 16 5 C -0.22 -12.50 10.41 84.03 0.87 -11.63 16 6 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 8 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 9 Si 0.96 44.47 27.74 68.60 1.90 46.37 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 12 H -0.24 -9.97 6.52 99.48 0.65 -9.32 16 13 C -0.08 -2.18 1.79 -10.77 -0.02 -2.20 16 14 C -0.12 -2.70 5.04 30.67 0.15 -2.55 16 15 C 0.12 2.54 6.44 86.37 0.56 3.09 16 16 N -0.59 -14.36 2.97 -823.28 -2.44 -16.80 16 17 C 0.59 17.88 7.63 86.31 0.66 18.53 16 18 O -0.57 -21.17 16.54 -4.55 -0.08 -21.25 16 19 C -0.10 -2.69 6.68 40.40 0.27 -2.42 16 20 C 0.08 1.84 9.52 84.74 0.81 2.65 16 21 N -0.49 -12.11 11.25 -192.62 -2.17 -14.28 16 22 C 0.17 3.90 7.85 133.99 1.05 4.95 16 23 C -0.03 -0.35 10.11 22.40 0.23 -0.13 16 24 C -0.14 -0.77 10.03 22.21 0.22 -0.55 16 25 C 0.14 1.46 11.30 85.24 0.96 2.42 16 26 N -0.30 -7.23 11.94 -57.04 -0.68 -7.91 16 27 N -0.25 -6.91 4.05 -181.39 -0.74 -7.65 16 28 C 0.09 1.84 5.18 86.51 0.45 2.29 16 29 C -0.12 -3.30 5.24 30.82 0.16 -3.14 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.91 6.40 -2.38 -0.02 1.90 16 33 H 0.37 15.23 5.44 -92.70 -0.50 14.73 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.93 6.36 -2.39 -0.02 1.92 16 38 H 0.08 1.98 7.00 -2.39 -0.02 1.97 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.23 3.70 6.04 -2.91 -0.02 3.68 16 41 H 0.20 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.21 -1.10 8.06 -2.91 -0.02 -1.13 16 43 H 0.25 0.12 8.06 -2.91 -0.02 0.10 16 44 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 2.05 3.95 -2.39 -0.01 2.05 16 46 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.07 2.25 7.40 -2.39 -0.02 2.23 16 Total: -1.00 -89.59 375.92 2.80 -86.78 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.45 Total: 23.24 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 7.61 Total: 9.63 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -7.08 Total: -144.78 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.08 Total: -21.25 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.90 Total: 46.37 kcal Total: -89.59 2.80 -86.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664457515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.809 kcal (2) G-P(sol) polarization free energy of solvation -89.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds