Wall clock time and date at job start Wed Apr 1 2020 02:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46704 * 2 1 4 4 N 1.46497 * 109.46992 * 239.99951 * 2 1 3 5 5 C 1.36930 * 120.00410 * 85.00099 * 4 2 1 6 6 H 1.08007 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00314 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99922 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99981 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46910 * 90.00325 * 9 7 5 11 11 H 1.48496 * 109.46998 * 210.00047 * 9 7 5 12 12 H 1.48496 * 109.47022 * 330.00111 * 9 7 5 13 13 C 1.53003 * 109.47067 * 119.99971 * 2 1 3 14 14 H 1.09003 * 109.58297 * 302.41083 * 13 2 1 15 15 C 1.53184 * 109.58722 * 62.83658 * 13 2 1 16 16 C 1.53041 * 109.31276 * 174.42373 * 15 13 2 17 17 C 1.53042 * 109.53665 * 298.63704 * 16 15 13 18 18 C 1.52758 * 109.38143 * 61.24018 * 17 16 15 19 19 N 1.46917 * 109.58691 * 182.13154 * 13 2 1 20 20 C 1.34782 * 120.62887 * 6.57436 * 19 13 2 21 21 O 1.21550 * 120.00138 * 6.03180 * 20 19 13 22 22 C 1.47886 * 119.99853 * 186.02366 * 20 19 13 23 23 C 1.39902 * 125.69547 * 174.07583 * 22 20 19 24 24 C 1.38578 * 107.59383 * 180.02562 * 23 22 20 25 25 N 1.34115 * 132.33919 * 179.31218 * 24 23 22 26 26 C 1.31129 * 120.83569 * 180.02562 * 25 24 23 27 27 C 1.40345 * 120.30433 * 0.02562 * 26 25 24 28 28 C 1.35454 * 119.46028 * 0.02562 * 27 26 25 29 29 N 1.36675 * 119.14107 * 0.27172 * 28 27 26 30 30 N 1.32376 * 125.69445 * 353.46187 * 22 20 19 31 31 H 1.08996 * 109.47316 * 294.93909 * 1 2 3 32 32 H 1.08994 * 109.47055 * 54.94191 * 1 2 3 33 33 H 1.09001 * 109.46870 * 174.94241 * 1 2 3 34 34 H 0.97005 * 119.99947 * 264.99939 * 4 2 1 35 35 H 0.97004 * 119.99771 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.50047 * 294.37336 * 15 13 2 37 37 H 1.08996 * 109.49992 * 54.44207 * 15 13 2 38 38 H 1.09000 * 109.46003 * 58.65916 * 16 15 13 39 39 H 1.09003 * 109.46369 * 178.63357 * 16 15 13 40 40 H 1.09003 * 109.49813 * 181.31781 * 17 16 15 41 41 H 1.08995 * 109.49565 * 301.41185 * 17 16 15 42 42 H 1.09004 * 109.50559 * 185.70796 * 18 17 16 43 43 H 1.08993 * 109.43435 * 65.42923 * 18 17 16 44 44 H 1.08006 * 126.19936 * 359.38869 * 23 22 20 45 45 H 1.08005 * 119.84462 * 179.97438 * 26 25 24 46 46 H 1.07996 * 120.27138 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.43031 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6124 -0.6619 -3.5089 8 7 2.7385 -0.0051 -4.6426 9 14 3.0579 -2.4740 -3.4247 10 1 1.8613 -3.2933 -3.7440 11 1 4.1335 -2.7654 -4.4061 12 1 3.5331 -2.8038 -2.0570 13 6 2.0401 -0.7213 1.2493 14 1 1.6429 -0.2344 2.1400 15 6 1.5901 -2.1851 1.2168 16 6 2.2179 -2.9340 2.3946 17 6 3.7429 -2.8945 2.2717 18 6 4.2174 -1.4431 2.3128 19 7 3.5083 -0.6783 1.2779 20 6 4.1920 0.0443 0.3685 21 8 3.5950 0.7549 -0.4165 22 6 5.6685 -0.0272 0.3258 23 6 6.4876 0.5753 -0.6351 24 6 7.8011 0.2678 -0.3182 25 7 8.9675 0.5752 -0.9045 26 6 10.1036 0.1558 -0.4017 27 6 10.1166 -0.6260 0.7638 28 6 8.9455 -0.9445 1.3654 29 7 7.7741 -0.5006 0.8187 30 7 6.4365 -0.6624 1.1971 31 1 -0.3634 0.4333 0.9318 32 1 -0.3633 0.5903 -0.8412 33 1 -0.3633 -1.0237 -0.0906 34 1 2.2491 -1.6318 -1.1526 35 1 3.0619 -0.4625 -5.4346 36 1 0.5037 -2.2336 1.2924 37 1 1.9105 -2.6436 0.2813 38 1 1.9164 -2.4598 3.3286 39 1 1.8800 -3.9703 2.3878 40 1 4.1889 -3.4479 3.0982 41 1 4.0435 -3.3464 1.3265 42 1 5.2904 -1.4055 2.1242 43 1 4.0016 -1.0186 3.2932 44 1 6.1556 1.1638 -1.4777 45 1 11.0336 0.4124 -0.8873 46 1 11.0526 -0.9708 1.1776 47 1 8.9373 -1.5448 2.2631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689909621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:23 Heat of formation + Delta-G solvation = 158.340413 kcal Electronic energy + Delta-G solvation = -31832.399217 eV Core-core repulsion = 27827.334300 eV Total energy + Delta-G solvation = -4005.064916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33399 -40.23956 -38.08772 -36.87667 -35.29510 -34.08371 -32.66704 -32.15794 -31.05352 -29.96788 -29.13461 -28.40095 -26.00915 -24.74373 -23.90223 -23.60973 -22.90172 -22.04154 -20.67257 -19.86672 -18.89946 -18.10925 -17.71045 -17.19327 -16.57632 -16.13695 -15.61694 -15.41015 -14.80261 -14.66805 -14.50200 -14.32257 -13.89669 -13.70569 -13.62676 -13.29073 -13.19541 -12.94845 -12.84839 -12.51660 -12.34871 -12.20823 -11.94187 -11.59600 -11.49560 -11.32295 -11.27909 -10.76985 -10.70999 -10.68996 -10.60398 -10.35942 -10.12489 -9.96068 -9.63190 -9.51267 -9.27050 -8.77343 -8.44355 -8.07633 -7.96167 -6.90069 -5.47818 -2.77195 0.38322 0.65740 1.85353 2.06309 3.21420 3.29602 3.48839 3.50420 3.56827 3.77586 3.85739 3.97600 4.18616 4.64365 4.75974 4.81406 4.90371 5.01175 5.07658 5.13068 5.17791 5.29627 5.44414 5.49921 5.54623 5.56812 5.70099 5.71892 5.80626 5.85795 5.91475 6.03803 6.07393 6.12031 6.18859 6.24067 6.32851 6.38046 6.42855 6.47510 6.58763 6.69736 6.95797 7.03607 7.27149 7.34803 7.51758 7.85827 8.32021 8.68986 8.79373 9.50137 10.22439 10.42929 11.72489 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010251 B = 0.005077 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.832544 B = 5513.277424 C = 7028.420540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.095 0.905 4 N -0.736 5.736 5 C -0.185 4.185 6 H 0.090 0.910 7 C -0.006 4.006 8 N -0.943 5.943 9 Si 0.870 3.130 10 H -0.289 1.289 11 H -0.296 1.296 12 H -0.285 1.285 13 C 0.145 3.855 14 H 0.071 0.929 15 C -0.133 4.133 16 C -0.118 4.118 17 C -0.133 4.133 18 C 0.080 3.920 19 N -0.601 5.601 20 C 0.574 3.426 21 O -0.428 6.428 22 C 0.095 3.905 23 C -0.187 4.187 24 C 0.245 3.755 25 N -0.451 5.451 26 C 0.171 3.829 27 C -0.228 4.228 28 C 0.159 3.841 29 N -0.314 5.314 30 N -0.292 5.292 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.354 0.646 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.132 0.868 43 H 0.059 0.941 44 H 0.177 0.823 45 H 0.179 0.821 46 H 0.165 0.835 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.634 -4.375 19.571 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.059 3.941 3 H 0.113 0.887 4 N -0.379 5.379 5 C -0.315 4.315 6 H 0.108 0.892 7 C -0.199 4.199 8 N -0.594 5.594 9 Si 0.702 3.298 10 H -0.217 1.217 11 H -0.223 1.223 12 H -0.212 1.212 13 C 0.041 3.959 14 H 0.089 0.911 15 C -0.172 4.172 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.044 4.044 19 N -0.337 5.337 20 C 0.357 3.643 21 O -0.293 6.293 22 C -0.063 4.063 23 C -0.218 4.218 24 C 0.020 3.980 25 N -0.161 5.161 26 C -0.016 4.016 27 C -0.252 4.252 28 C 0.024 3.976 29 N -0.086 5.086 30 N -0.122 5.122 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.188 0.812 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.077 0.923 44 H 0.195 0.805 45 H 0.196 0.804 46 H 0.183 0.817 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 11.905 -3.913 19.188 22.918 hybrid contribution 0.666 -1.869 0.033 1.985 sum 12.571 -5.783 19.221 23.684 Atomic orbital electron populations 1.22531 0.99343 1.00936 1.00014 1.20764 0.90732 0.98363 0.84195 0.88740 1.42836 1.79289 1.08585 1.07229 1.18975 1.32964 0.95141 0.84464 0.89199 1.24514 1.03070 0.96273 0.96036 1.69671 1.54851 1.34729 1.00142 0.86746 0.77921 0.88733 0.76359 1.21673 1.22282 1.21206 1.21673 0.78240 0.95945 1.00017 0.91093 1.22001 1.00669 0.95627 0.98879 1.21533 0.95282 1.00199 0.98563 1.21814 0.96276 0.96949 1.02086 1.22482 1.00610 0.90645 0.90686 1.47692 1.06352 1.48869 1.30786 1.17063 0.82837 0.82920 0.81524 1.91065 1.64990 1.36862 1.36402 1.22639 0.95648 0.94840 0.93176 1.21181 0.86619 1.09395 1.04567 1.20545 0.94641 0.95585 0.87276 1.68255 0.96361 1.21801 1.29712 1.23394 0.96334 0.90280 0.91544 1.21799 0.98216 1.05341 0.99857 1.22030 0.81819 0.95475 0.98263 1.47575 1.06584 1.34494 1.19906 1.77679 0.82875 1.27963 1.23730 0.94496 0.92273 0.93701 0.81214 0.93696 0.90538 0.91259 0.92056 0.92193 0.91403 0.91880 0.85168 0.92277 0.80530 0.80441 0.81743 0.80595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.07 37.16 0.34 -2.67 16 2 C 0.17 3.40 1.89 -67.93 -0.13 3.27 16 3 H 0.10 2.12 5.86 -52.24 -0.31 1.82 16 4 N -0.74 -17.98 3.29 -53.42 -0.18 -18.16 16 5 C -0.19 -5.41 8.59 -15.06 -0.13 -5.54 16 6 H 0.09 2.88 8.06 -52.48 -0.42 2.46 16 7 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 8 N -0.94 -31.20 13.97 55.49 0.78 -30.43 16 9 Si 0.87 23.81 27.74 -169.99 -4.71 19.09 16 10 H -0.29 -7.83 7.11 56.52 0.40 -7.42 16 11 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 12 H -0.29 -7.52 6.52 56.52 0.37 -7.15 16 13 C 0.14 2.38 2.75 -67.61 -0.19 2.19 16 14 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.13 -2.00 4.81 -26.61 -0.13 -2.13 16 16 C -0.12 -1.42 5.89 -26.69 -0.16 -1.58 16 17 C -0.13 -1.67 6.06 -26.83 -0.16 -1.83 16 18 C 0.08 1.10 6.30 -3.93 -0.02 1.07 16 19 N -0.60 -10.26 2.97 -166.58 -0.49 -10.75 16 20 C 0.57 11.62 7.12 -12.31 -0.09 11.53 16 21 O -0.43 -10.15 10.06 5.32 0.05 -10.09 16 22 C 0.10 1.79 6.84 -83.06 -0.57 1.22 16 23 C -0.19 -3.59 10.66 -38.83 -0.41 -4.01 16 24 C 0.25 4.03 7.90 -155.42 -1.23 2.80 16 25 N -0.45 -6.44 10.48 -12.22 -0.13 -6.57 16 26 C 0.17 1.52 11.27 -17.06 -0.19 1.32 16 27 C -0.23 -1.49 10.05 -39.78 -0.40 -1.89 16 28 C 0.16 1.40 11.30 -16.39 -0.19 1.21 16 29 N -0.31 -4.42 3.90 -12.20 -0.05 -4.47 16 30 N -0.29 -4.65 8.95 33.23 0.30 -4.35 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.78 6.91 -51.93 -0.36 0.42 16 34 H 0.35 8.75 3.69 -40.82 -0.15 8.60 16 35 H 0.25 8.07 8.31 -40.82 -0.34 7.73 16 36 H 0.08 1.05 6.93 -51.93 -0.36 0.69 16 37 H 0.07 1.25 6.21 -51.93 -0.32 0.93 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.13 1.87 3.63 -126.49 -0.46 1.41 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.18 3.62 8.06 -52.48 -0.42 3.19 16 45 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 47 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -37.63 365.06 -9.31 -46.93 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.62 Total: 8.59 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -3.75 Total: 4.70 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: 0.23 Total: -74.73 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.05 Total: -10.09 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.71 Total: 19.09 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.63 -9.31 -46.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689909621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.273 kcal (2) G-P(sol) polarization free energy of solvation -37.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds