Wall clock time and date at job start Wed Apr 1 2020 02:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47340 * 2 1 4 4 N 1.46507 * 109.47069 * 240.00089 * 2 1 3 5 5 C 1.36935 * 119.99799 * 76.37437 * 4 2 1 6 6 H 1.07991 * 120.00751 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99596 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99881 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99929 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47105 * 120.00006 * 9 7 5 12 12 H 1.48501 * 109.47263 * 240.00083 * 9 7 5 13 13 C 1.52995 * 109.47329 * 119.99895 * 2 1 3 14 14 H 1.09002 * 109.58626 * 71.39906 * 13 2 1 15 15 C 1.53193 * 109.58786 * 311.11950 * 13 2 1 16 16 C 1.53073 * 109.29830 * 185.71900 * 15 13 2 17 17 C 1.53036 * 109.65751 * 61.14849 * 16 15 13 18 18 C 1.53198 * 109.31550 * 298.70072 * 17 16 15 19 19 N 1.46925 * 108.77313 * 54.63756 * 18 17 16 20 20 C 1.34772 * 120.63375 * 126.41849 * 19 18 17 21 21 O 1.21585 * 120.00372 * 177.22211 * 20 19 18 22 22 C 1.47530 * 119.99815 * 357.21441 * 20 19 18 23 23 C 1.39250 * 120.24336 * 36.54642 * 22 20 19 24 24 C 1.38448 * 120.27882 * 180.02562 * 23 22 20 25 25 C 1.37642 * 120.79530 * 0.02562 * 24 23 22 26 26 C 1.40076 * 120.15051 * 0.02562 * 25 24 23 27 27 N 1.35406 * 133.02911 * 180.02562 * 26 25 24 28 28 N 1.28665 * 110.10566 * 179.25593 * 27 26 25 29 29 N 1.40249 * 109.42972 * 0.62909 * 28 27 26 30 30 H 0.96994 * 126.66661 * 179.47987 * 29 28 27 31 31 C 1.36983 * 106.67104 * 359.45108 * 29 28 27 32 32 H 1.08994 * 109.47379 * 296.98970 * 1 2 3 33 33 H 1.09000 * 109.47533 * 56.99503 * 1 2 3 34 34 H 1.09003 * 109.47386 * 176.99282 * 1 2 3 35 35 H 0.97001 * 119.99675 * 256.37047 * 4 2 1 36 36 H 0.96998 * 119.99521 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.49110 * 305.52660 * 15 13 2 38 38 H 1.09000 * 109.49952 * 65.62045 * 15 13 2 39 39 H 1.09006 * 109.34370 * 301.12812 * 16 15 13 40 40 H 1.08997 * 109.44316 * 181.23084 * 16 15 13 41 41 H 1.09008 * 109.49796 * 178.75111 * 17 16 15 42 42 H 1.09001 * 109.50177 * 58.65637 * 17 16 15 43 43 H 1.09001 * 109.58699 * 294.85019 * 18 17 16 44 44 H 1.08998 * 109.70671 * 174.49411 * 18 17 16 45 45 H 1.08003 * 119.86411 * 0.02896 * 23 22 20 46 46 H 1.07997 * 119.59931 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.92452 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.9831 -0.0618 -2.4121 6 1 1.5950 0.9430 -2.4895 7 6 2.4463 -0.7160 -3.5455 8 7 2.9188 -1.9409 -3.4514 9 14 2.3977 0.1414 -5.2043 10 1 1.8249 1.5019 -5.0417 11 1 3.7758 0.2468 -5.7476 12 1 1.5544 -0.6424 -6.1422 13 6 2.0400 -0.7212 1.2492 14 1 1.8529 -1.7910 1.1555 15 6 1.3163 -0.1799 2.4862 16 6 1.9299 -0.8010 3.7435 17 6 3.4084 -0.4173 3.8383 18 6 4.1532 -0.9640 2.6163 19 7 3.4822 -0.4847 1.4002 20 6 4.1765 0.1591 0.4412 21 8 3.6204 0.5062 -0.5828 22 6 5.6114 0.4429 0.6339 23 6 6.4261 -0.4761 1.2902 24 6 7.7726 -0.2103 1.4720 25 6 8.3282 0.9614 1.0103 26 6 7.5321 1.9043 0.3476 27 7 7.7959 3.1134 -0.2019 28 7 6.7263 3.6068 -0.7195 29 7 5.6584 2.7203 -0.5177 30 1 4.7391 2.8472 -0.7996 31 6 6.1662 1.6399 0.1542 32 1 -0.3634 0.4664 0.9157 33 1 -0.3634 0.5598 -0.8618 34 1 -0.3634 -1.0263 -0.0539 35 1 2.3666 -1.5933 -1.1269 36 1 3.2428 -2.3978 -4.2433 37 1 1.4268 0.9038 2.5270 38 1 0.2584 -0.4363 2.4301 39 1 1.8390 -1.8861 3.6914 40 1 1.4024 -0.4342 4.6239 41 1 3.8371 -0.8425 4.7459 42 1 3.5015 0.6683 3.8655 43 1 4.1382 -2.0537 2.6365 44 1 5.1848 -0.6125 2.6270 45 1 6.0059 -1.4001 1.6590 46 1 8.3945 -0.9309 1.9822 47 1 9.3804 1.1541 1.1595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707435097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:12 Heat of formation + Delta-G solvation = 145.867382 kcal Electronic energy + Delta-G solvation = -31969.348449 eV Core-core repulsion = 27963.742662 eV Total energy + Delta-G solvation = -4005.605788 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08186 -40.33111 -37.66552 -36.92871 -35.27620 -33.36073 -32.84790 -32.29088 -30.48082 -30.04222 -29.83945 -27.85991 -25.60075 -24.49862 -23.97277 -23.29754 -22.58585 -22.31858 -20.82414 -20.10566 -19.40986 -18.02393 -17.60656 -16.79156 -16.12013 -15.73484 -15.70439 -15.40846 -14.96238 -14.72995 -14.58280 -14.30961 -13.89298 -13.57963 -13.49988 -13.14641 -13.01988 -12.59716 -12.43960 -12.26124 -12.13689 -12.06115 -11.94710 -11.91371 -11.42995 -11.20967 -11.16035 -11.06672 -10.89129 -10.83796 -10.72606 -10.64271 -10.38514 -10.16535 -9.76794 -9.51031 -8.86944 -8.78180 -8.56669 -8.25596 -8.10602 -6.55869 -5.57146 -2.76201 0.29392 1.25678 2.06435 2.53069 3.20765 3.24692 3.52029 3.57388 3.59478 3.74532 4.11610 4.50147 4.67315 4.71087 4.76865 4.80583 4.86000 4.90899 4.98430 5.08549 5.14458 5.34545 5.39305 5.44663 5.54319 5.66538 5.69825 5.74530 5.79479 5.83425 5.86892 5.97183 6.03735 6.04640 6.08314 6.08885 6.17133 6.27012 6.38766 6.39832 6.51532 6.71329 6.84274 6.94911 7.03875 7.26088 7.82613 7.86825 7.99180 8.59433 8.80098 9.71976 10.28343 10.63578 11.66982 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.006081 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.909892 B = 4603.417430 C = 6987.479603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.182 3.818 3 H 0.057 0.943 4 N -0.688 5.688 5 C -0.183 4.183 6 H 0.063 0.937 7 C -0.025 4.025 8 N -0.940 5.940 9 Si 0.896 3.104 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.296 1.296 13 C 0.148 3.852 14 H 0.068 0.932 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.083 3.917 19 N -0.604 5.604 20 C 0.511 3.489 21 O -0.428 6.428 22 C -0.111 4.111 23 C -0.056 4.056 24 C -0.141 4.141 25 C -0.024 4.024 26 C -0.027 4.027 27 N -0.221 5.221 28 N -0.005 5.005 29 N -0.475 5.475 30 H 0.456 0.544 31 C 0.136 3.864 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.378 0.622 36 H 0.248 0.752 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.152 0.848 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 1.560 19.476 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.072 3.928 3 H 0.074 0.926 4 N -0.328 5.328 5 C -0.315 4.315 6 H 0.081 0.919 7 C -0.219 4.219 8 N -0.591 5.591 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.225 1.225 12 H -0.224 1.224 13 C 0.045 3.955 14 H 0.086 0.914 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.040 4.040 19 N -0.341 5.341 20 C 0.296 3.704 21 O -0.296 6.296 22 C -0.119 4.119 23 C -0.078 4.078 24 C -0.162 4.162 25 C -0.047 4.047 26 C -0.151 4.151 27 N -0.101 5.101 28 N 0.014 4.986 29 N -0.198 5.198 30 H 0.305 0.695 31 C 0.011 3.989 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.211 0.789 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.335 3.298 18.106 19.162 hybrid contribution -0.724 -0.876 -0.802 1.391 sum 4.611 2.422 17.304 18.071 Atomic orbital electron populations 1.22593 0.99593 1.01008 0.99829 1.20397 0.90578 0.96586 0.85246 0.92570 1.42290 1.72810 1.15413 1.02263 1.19018 1.30919 0.96984 0.84561 0.91921 1.24555 1.03245 0.96769 0.97308 1.69643 1.49737 1.12044 1.27710 0.86251 0.76902 0.78430 0.85526 1.20971 1.22488 1.22391 1.21532 0.78558 0.99805 0.95645 0.91437 1.22042 0.99904 1.00767 0.94023 1.21532 0.95459 1.00822 0.97892 1.21917 0.96113 1.01461 0.97697 1.22414 0.98175 0.98962 0.84465 1.47665 1.08602 1.58824 1.18993 1.18160 0.85467 0.82548 0.84261 1.91373 1.67490 1.46667 1.24036 1.19249 0.95901 0.93266 1.03514 1.21655 0.93331 0.98538 0.94274 1.20912 0.94927 0.97449 1.02943 1.20507 0.99413 0.91046 0.93716 1.19919 0.92081 0.95295 1.07834 1.74843 1.18879 1.07522 1.08832 1.81560 0.88735 1.12877 1.15467 1.47774 1.13042 1.13941 1.45061 0.69505 1.18997 0.93758 0.90181 0.96007 0.94294 0.92788 0.93508 0.78900 0.94204 0.91780 0.90429 0.91885 0.92116 0.91163 0.91766 0.91542 0.88017 0.83106 0.84173 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.79 37.15 0.33 -2.64 16 2 C 0.18 3.49 1.82 -67.93 -0.12 3.36 16 3 H 0.06 1.18 6.40 -51.93 -0.33 0.85 16 4 N -0.69 -16.76 3.23 -53.43 -0.17 -16.93 16 5 C -0.18 -5.08 8.19 -15.06 -0.12 -5.20 16 6 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 7 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 8 N -0.94 -29.08 13.06 55.49 0.72 -28.35 16 9 Si 0.90 23.63 29.55 -169.99 -5.02 18.61 16 10 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 11 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 12 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 13 C 0.15 2.25 2.61 -67.60 -0.18 2.07 16 14 H 0.07 1.09 8.12 -51.93 -0.42 0.66 16 15 C -0.13 -1.51 4.46 -26.59 -0.12 -1.63 16 16 C -0.12 -1.11 5.88 -26.67 -0.16 -1.27 16 17 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 18 C 0.08 0.84 4.97 -3.71 -0.02 0.83 16 19 N -0.60 -8.72 2.97 -166.44 -0.50 -9.22 16 20 C 0.51 8.93 7.15 -12.47 -0.09 8.84 16 21 O -0.43 -9.33 9.09 5.29 0.05 -9.28 16 22 C -0.11 -1.69 5.45 -104.92 -0.57 -2.27 16 23 C -0.06 -0.64 7.37 -39.13 -0.29 -0.93 16 24 C -0.14 -1.34 9.98 -39.72 -0.40 -1.73 16 25 C -0.02 -0.27 10.09 -39.11 -0.39 -0.67 16 26 C -0.03 -0.41 7.26 -84.76 -0.62 -1.02 16 27 N -0.22 -3.63 12.40 32.15 0.40 -3.24 16 28 N 0.00 -0.08 13.83 60.35 0.83 0.76 16 29 N -0.48 -7.90 7.43 32.50 0.24 -7.66 16 30 H 0.46 7.37 8.50 -182.49 -1.55 5.82 16 31 C 0.14 2.20 6.94 -83.92 -0.58 1.62 16 32 H 0.04 0.55 6.25 -51.93 -0.32 0.23 16 33 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.38 10.06 7.71 -40.82 -0.31 9.74 16 36 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.87 6.63 -51.93 -0.34 0.52 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.92 3.72 -51.93 -0.19 0.73 16 45 H 0.15 1.41 5.67 -52.48 -0.30 1.12 16 46 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -34.08 365.80 -9.07 -43.15 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.55 Total: 9.45 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.59 Total: -2.79 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 1.53 Total: -64.65 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.05 Total: -9.28 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.08 -9.07 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707435097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.018 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds