Wall clock time and date at job start Wed Apr 1 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47340 * 2 1 4 4 N 1.46507 * 109.47069 * 240.00089 * 2 1 3 5 5 C 1.36935 * 119.99799 * 76.37437 * 4 2 1 6 6 H 1.07991 * 120.00751 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99596 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99881 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99929 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47105 * 120.00006 * 9 7 5 12 12 H 1.48501 * 109.47263 * 240.00083 * 9 7 5 13 13 C 1.52995 * 109.47329 * 119.99895 * 2 1 3 14 14 H 1.09002 * 109.58626 * 71.39906 * 13 2 1 15 15 C 1.53193 * 109.58786 * 311.11950 * 13 2 1 16 16 C 1.53073 * 109.29830 * 185.71900 * 15 13 2 17 17 C 1.53036 * 109.65751 * 61.14849 * 16 15 13 18 18 C 1.53198 * 109.31550 * 298.70072 * 17 16 15 19 19 N 1.46925 * 108.77313 * 54.63756 * 18 17 16 20 20 C 1.34772 * 120.63375 * 126.41849 * 19 18 17 21 21 O 1.21585 * 120.00372 * 177.22211 * 20 19 18 22 22 C 1.47530 * 119.99815 * 357.21441 * 20 19 18 23 23 C 1.39250 * 120.24336 * 36.54642 * 22 20 19 24 24 C 1.38448 * 120.27882 * 180.02562 * 23 22 20 25 25 C 1.37642 * 120.79530 * 0.02562 * 24 23 22 26 26 C 1.40076 * 120.15051 * 0.02562 * 25 24 23 27 27 N 1.35406 * 133.02911 * 180.02562 * 26 25 24 28 28 N 1.28665 * 110.10566 * 179.25593 * 27 26 25 29 29 N 1.40249 * 109.42972 * 0.62909 * 28 27 26 30 30 H 0.96994 * 126.66661 * 179.47987 * 29 28 27 31 31 C 1.36983 * 106.67104 * 359.45108 * 29 28 27 32 32 H 1.08994 * 109.47379 * 296.98970 * 1 2 3 33 33 H 1.09000 * 109.47533 * 56.99503 * 1 2 3 34 34 H 1.09003 * 109.47386 * 176.99282 * 1 2 3 35 35 H 0.97001 * 119.99675 * 256.37047 * 4 2 1 36 36 H 0.96998 * 119.99521 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.49110 * 305.52660 * 15 13 2 38 38 H 1.09000 * 109.49952 * 65.62045 * 15 13 2 39 39 H 1.09006 * 109.34370 * 301.12812 * 16 15 13 40 40 H 1.08997 * 109.44316 * 181.23084 * 16 15 13 41 41 H 1.09008 * 109.49796 * 178.75111 * 17 16 15 42 42 H 1.09001 * 109.50177 * 58.65637 * 17 16 15 43 43 H 1.09001 * 109.58699 * 294.85019 * 18 17 16 44 44 H 1.08998 * 109.70671 * 174.49411 * 18 17 16 45 45 H 1.08003 * 119.86411 * 0.02896 * 23 22 20 46 46 H 1.07997 * 119.59931 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.92452 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.9831 -0.0618 -2.4121 6 1 1.5950 0.9430 -2.4895 7 6 2.4463 -0.7160 -3.5455 8 7 2.9188 -1.9409 -3.4514 9 14 2.3977 0.1414 -5.2043 10 1 1.8249 1.5019 -5.0417 11 1 3.7758 0.2468 -5.7476 12 1 1.5544 -0.6424 -6.1422 13 6 2.0400 -0.7212 1.2492 14 1 1.8529 -1.7910 1.1555 15 6 1.3163 -0.1799 2.4862 16 6 1.9299 -0.8010 3.7435 17 6 3.4084 -0.4173 3.8383 18 6 4.1532 -0.9640 2.6163 19 7 3.4822 -0.4847 1.4002 20 6 4.1765 0.1591 0.4412 21 8 3.6204 0.5062 -0.5828 22 6 5.6114 0.4429 0.6339 23 6 6.4261 -0.4761 1.2902 24 6 7.7726 -0.2103 1.4720 25 6 8.3282 0.9614 1.0103 26 6 7.5321 1.9043 0.3476 27 7 7.7959 3.1134 -0.2019 28 7 6.7263 3.6068 -0.7195 29 7 5.6584 2.7203 -0.5177 30 1 4.7391 2.8472 -0.7996 31 6 6.1662 1.6399 0.1542 32 1 -0.3634 0.4664 0.9157 33 1 -0.3634 0.5598 -0.8618 34 1 -0.3634 -1.0263 -0.0539 35 1 2.3666 -1.5933 -1.1269 36 1 3.2428 -2.3978 -4.2433 37 1 1.4268 0.9038 2.5270 38 1 0.2584 -0.4363 2.4301 39 1 1.8390 -1.8861 3.6914 40 1 1.4024 -0.4342 4.6239 41 1 3.8371 -0.8425 4.7459 42 1 3.5015 0.6683 3.8655 43 1 4.1382 -2.0537 2.6365 44 1 5.1848 -0.6125 2.6270 45 1 6.0059 -1.4001 1.6590 46 1 8.3945 -0.9309 1.9822 47 1 9.3804 1.1541 1.1595 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707435097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:11 Heat of formation + Delta-G solvation = 121.659434 kcal Electronic energy + Delta-G solvation = -31970.398185 eV Core-core repulsion = 27963.742662 eV Total energy + Delta-G solvation = -4006.655523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.22159 -41.53687 -38.74487 -38.09178 -36.80780 -34.59828 -34.23181 -33.70905 -31.76006 -31.21741 -31.08935 -29.36248 -26.79102 -26.04941 -25.15900 -24.51252 -23.86939 -23.42146 -21.92910 -21.39885 -20.62230 -19.24470 -18.90316 -18.45774 -17.25686 -16.93738 -16.87709 -16.70102 -16.38621 -15.86754 -15.73276 -15.49849 -15.42781 -14.83528 -14.80989 -14.49506 -14.19915 -13.85028 -13.68782 -13.55750 -13.39083 -13.15691 -13.00559 -12.99548 -12.98266 -12.87023 -12.59800 -12.34831 -12.31085 -12.20449 -12.10376 -11.82430 -11.66353 -11.60125 -11.31782 -11.15198 -10.80338 -10.03058 -9.85564 -9.42996 -9.30669 -8.54557 -7.79715 -4.94906 -0.76150 0.22464 0.91292 1.35605 1.37698 1.39756 1.46679 2.04812 2.11917 2.61074 2.65331 3.03834 3.46377 3.54550 3.69269 3.76079 3.86375 3.87596 3.96356 4.05338 4.10524 4.21635 4.33740 4.38901 4.41358 4.56684 4.64340 4.71940 4.74939 4.77917 4.87332 4.89932 4.95265 5.06886 5.10693 5.17282 5.19552 5.21175 5.24513 5.30051 5.42067 5.48837 5.56554 5.61783 5.65072 5.80636 5.92190 6.42238 6.64762 6.79430 7.47399 7.55800 8.28459 8.50722 9.45708 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.006081 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.909892 B = 4603.417430 C = 6987.479603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.180 3.820 3 H 0.035 0.965 4 N -0.692 5.692 5 C -0.155 4.155 6 H 0.053 0.947 7 C -0.090 4.090 8 N -0.975 5.975 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.310 1.310 12 H -0.297 1.297 13 C 0.152 3.848 14 H 0.062 0.938 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.074 3.926 19 N -0.601 5.601 20 C 0.510 3.490 21 O -0.491 6.491 22 C -0.147 4.147 23 C -0.034 4.034 24 C -0.122 4.122 25 C -0.015 4.015 26 C -0.046 4.046 27 N -0.229 5.229 28 N -0.032 5.032 29 N -0.486 5.486 30 H 0.451 0.549 31 C 0.116 3.884 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.364 0.636 36 H 0.239 0.761 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.178 0.822 46 H 0.195 0.805 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 0.138 23.584 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.053 0.947 4 N -0.330 5.330 5 C -0.288 4.288 6 H 0.071 0.929 7 C -0.280 4.280 8 N -0.631 5.631 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.239 1.239 12 H -0.225 1.225 13 C 0.048 3.952 14 H 0.080 0.920 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.166 4.166 18 C -0.047 4.047 19 N -0.336 5.336 20 C 0.296 3.704 21 O -0.363 6.363 22 C -0.155 4.155 23 C -0.055 4.055 24 C -0.143 4.143 25 C -0.037 4.037 26 C -0.171 4.171 27 N -0.108 5.108 28 N -0.013 5.013 29 N -0.209 5.209 30 H 0.299 0.701 31 C -0.009 4.009 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.195 0.805 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.195 0.805 46 H 0.212 0.788 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.725 1.915 22.306 23.377 hybrid contribution -1.059 -0.432 -1.820 2.150 sum 5.666 1.483 20.486 21.307 Atomic orbital electron populations 1.22455 0.98156 1.00838 1.00592 1.20499 0.91310 0.95596 0.85424 0.94687 1.42313 1.73026 1.14760 1.02851 1.19153 1.27677 0.96045 0.85945 0.92864 1.25071 1.05310 0.97723 0.99880 1.69766 1.52551 1.13274 1.27505 0.85419 0.75973 0.77979 0.82751 1.20107 1.23878 1.22468 1.21402 0.79638 0.98882 0.95254 0.92023 1.21988 1.00129 1.00342 0.93559 1.21533 0.95807 1.01132 0.96835 1.21905 0.95680 1.00997 0.98035 1.22770 0.98739 1.00072 0.83072 1.47809 1.08330 1.57717 1.19718 1.18629 0.86563 0.81311 0.83870 1.91326 1.68857 1.49760 1.26399 1.19240 0.95219 0.94425 1.06648 1.22123 0.93995 0.98008 0.91402 1.21491 0.94196 0.97329 1.01250 1.21092 1.00731 0.90257 0.91648 1.20456 0.92222 0.95581 1.08823 1.74754 1.18827 1.08402 1.08827 1.81508 0.89122 1.13664 1.17051 1.47797 1.12806 1.14573 1.45679 0.70129 1.19401 0.94606 0.90518 0.96399 0.90581 0.95308 0.93668 0.80455 0.95242 0.92495 0.89589 0.91066 0.90160 0.87899 0.92739 0.89674 0.86719 0.80493 0.78836 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 8.79 71.98 0.63 -5.00 16 2 C 0.18 7.08 1.82 44.99 0.08 7.16 16 3 H 0.04 1.55 6.40 -2.39 -0.02 1.54 16 4 N -0.69 -35.06 3.23 -322.95 -1.04 -36.11 16 5 C -0.15 -8.98 8.19 84.04 0.69 -8.29 16 6 H 0.05 3.13 7.83 -2.92 -0.02 3.11 16 7 C -0.09 -5.51 5.50 84.86 0.47 -5.04 16 8 N -0.98 -62.80 13.06 21.65 0.28 -62.52 16 9 Si 0.94 50.80 29.55 68.60 2.03 52.83 16 10 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.31 -17.12 7.11 99.48 0.71 -16.41 16 12 H -0.30 -15.77 7.11 99.48 0.71 -15.07 16 13 C 0.15 4.49 2.61 44.97 0.12 4.61 16 14 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 15 C -0.12 -2.57 4.46 30.68 0.14 -2.44 16 16 C -0.12 -1.68 5.88 30.63 0.18 -1.50 16 17 C -0.13 -1.69 6.08 30.67 0.19 -1.51 16 18 C 0.07 1.24 4.97 86.36 0.43 1.67 16 19 N -0.60 -16.65 2.97 -798.76 -2.38 -19.02 16 20 C 0.51 18.07 7.15 86.69 0.62 18.69 16 21 O -0.49 -22.56 9.09 -3.98 -0.04 -22.60 16 22 C -0.15 -4.38 5.45 -20.06 -0.11 -4.49 16 23 C -0.03 -0.65 7.37 22.56 0.17 -0.48 16 24 C -0.12 -1.66 9.98 22.18 0.22 -1.44 16 25 C -0.02 -0.28 10.09 22.58 0.23 -0.05 16 26 C -0.05 -1.34 7.26 39.58 0.29 -1.05 16 27 N -0.23 -7.62 12.40 -52.20 -0.65 -8.27 16 28 N -0.03 -1.15 13.83 37.02 0.51 -0.64 16 29 N -0.49 -17.29 7.43 -51.10 -0.38 -17.67 16 30 H 0.45 16.22 8.50 -213.23 -1.81 14.41 16 31 C 0.12 3.81 6.94 39.40 0.27 4.08 16 32 H 0.08 2.07 6.25 -2.39 -0.01 2.06 16 33 H 0.03 1.12 8.12 -2.39 -0.02 1.10 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.36 20.15 7.71 -92.71 -0.71 19.43 16 36 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.68 6.63 -2.39 -0.02 1.66 16 39 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.12 1.59 3.72 -2.39 -0.01 1.58 16 45 H 0.18 2.44 5.67 -2.91 -0.02 2.43 16 46 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 47 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -81.73 365.80 1.45 -80.27 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -1.49 Total: 28.79 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 4.61 Total: 4.93 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -3.65 Total: -144.23 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.04 Total: -22.60 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.03 Total: 52.83 kcal Total: -81.73 1.45 -80.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707435097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.934 kcal (2) G-P(sol) polarization free energy of solvation -81.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds