Wall clock time and date at job start Wed Apr 1 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47032 * 2 1 4 4 N 1.46494 * 109.47440 * 239.99257 * 2 1 3 5 5 C 1.36933 * 120.00152 * 84.99813 * 4 2 1 6 6 H 1.08007 * 119.99664 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00083 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00091 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99897 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47274 * 59.99506 * 9 7 5 11 11 H 1.48498 * 109.47145 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46883 * 299.99557 * 9 7 5 13 13 C 1.53004 * 109.46957 * 119.98926 * 2 1 3 14 14 C 1.53037 * 109.46389 * 300.00550 * 13 2 1 15 15 C 1.53189 * 109.33989 * 178.61277 * 14 13 2 16 16 N 1.46991 * 108.74003 * 54.61875 * 15 14 13 17 17 C 1.34783 * 120.61172 * 126.38835 * 16 15 14 18 18 O 1.21577 * 119.99416 * 176.22711 * 17 16 15 19 19 C 1.47677 * 120.00302 * 356.22388 * 17 16 15 20 20 C 1.40181 * 120.41098 * 50.56985 * 19 17 16 21 21 N 1.31190 * 121.37623 * 179.97438 * 20 19 17 22 22 C 1.32926 * 121.84687 * 359.97438 * 21 20 19 23 23 N 1.36626 * 133.27048 * 180.02562 * 22 21 20 24 24 H 0.97000 * 125.34475 * 0.02562 * 23 22 21 25 25 N 1.39808 * 109.32042 * 179.97438 * 23 22 21 26 26 C 1.30197 * 110.12698 * 0.02562 * 25 23 22 27 27 C 1.41069 * 120.19933 * 359.97438 * 22 21 20 28 28 C 1.39508 * 120.41109 * 230.29467 * 19 17 16 29 29 C 1.46927 * 118.75738 * 306.41103 * 16 15 14 30 30 C 1.53043 * 109.44893 * 179.97438 * 13 2 1 31 31 H 1.08999 * 109.47272 * 300.00253 * 1 2 3 32 32 H 1.08993 * 109.47312 * 60.00846 * 1 2 3 33 33 H 1.09004 * 109.47084 * 180.02562 * 1 2 3 34 34 H 0.97000 * 119.99946 * 265.00065 * 4 2 1 35 35 H 0.96994 * 119.99570 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.45952 * 59.97664 * 13 2 1 37 37 H 1.09003 * 109.49368 * 298.57730 * 14 13 2 38 38 H 1.09001 * 109.49782 * 58.64097 * 14 13 2 39 39 H 1.09005 * 109.58692 * 174.43898 * 15 14 13 40 40 H 1.08999 * 109.58923 * 294.85911 * 15 14 13 41 41 H 1.08004 * 119.31581 * 359.97438 * 20 19 17 42 42 H 1.08007 * 126.20177 * 180.02562 * 26 25 23 43 43 H 1.08002 * 121.02685 * 359.97438 * 28 19 17 44 44 H 1.09001 * 109.58223 * 293.82053 * 29 16 15 45 45 H 1.08998 * 109.58886 * 173.39411 * 29 16 15 46 46 H 1.09005 * 109.49721 * 301.33204 * 30 13 2 47 47 H 1.08996 * 109.49475 * 61.40015 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1492 -0.0078 -2.3757 6 1 1.8926 1.0402 -2.4242 7 6 2.6115 -0.6624 -3.5090 8 7 2.9246 -1.9395 -3.4497 9 14 2.7905 0.2694 -5.1181 10 1 3.7464 1.3913 -4.9367 11 1 3.2995 -0.6491 -6.1681 12 1 1.4684 0.8071 -5.5285 13 6 2.0400 -0.7210 1.2494 14 6 1.5296 0.0007 2.4987 15 6 2.0130 -0.7434 3.7475 16 7 3.4754 -0.8762 3.6816 17 6 4.2494 -0.4563 4.7021 18 8 5.4516 -0.6337 4.6660 19 6 3.6371 0.2190 5.8639 20 6 2.5408 -0.3554 6.5221 21 7 1.9827 0.2278 7.5562 22 6 2.4259 1.3874 8.0312 23 7 2.0341 2.1858 9.0684 24 1 1.2975 2.0007 9.6718 25 7 2.8622 3.3109 9.1245 26 6 3.7525 3.2596 8.1759 27 6 3.5260 2.0289 7.4243 28 6 4.1462 1.4339 6.3236 29 6 4.0775 -1.4746 2.4824 30 6 3.5704 -0.7213 1.2486 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6319 -1.1523 35 1 3.2472 -2.3969 -4.2419 36 1 1.6762 -1.7486 1.2496 37 1 1.9134 1.0208 2.5117 38 1 0.4399 0.0220 2.4869 39 1 1.7362 -0.1799 4.6386 40 1 1.5576 -1.7330 3.7824 41 1 2.1475 -1.2979 6.1705 42 1 4.5203 3.9939 7.9813 43 1 4.9927 1.9007 5.8420 44 1 3.7904 -2.5239 2.4142 45 1 5.1630 -1.3936 2.5392 46 1 3.9337 -1.2146 0.3470 47 1 3.9344 0.3058 1.2732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714806734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:55 Heat of formation + Delta-G solvation = 56.946241 kcal Electronic energy + Delta-G solvation = -29646.385023 eV Core-core repulsion = 25636.923325 eV Total energy + Delta-G solvation = -4009.461698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73507 -41.34229 -39.38915 -38.71453 -36.87841 -34.62549 -34.33124 -32.76872 -32.21486 -31.77866 -30.92712 -29.87416 -26.91232 -25.75353 -25.36380 -24.57085 -23.80896 -22.94723 -22.29476 -21.14735 -20.36661 -19.50952 -19.20700 -18.72328 -17.51981 -17.34339 -16.74150 -16.62784 -16.45295 -16.09186 -15.68327 -15.47305 -15.29832 -15.01076 -14.89806 -14.63989 -14.43159 -14.24609 -14.06325 -13.92877 -13.81159 -13.49575 -13.26324 -12.95885 -12.84313 -12.72240 -12.33688 -12.26567 -12.20989 -12.09174 -11.88641 -11.83725 -11.45517 -11.36302 -11.24210 -11.10365 -10.84579 -10.57675 -10.19853 -9.73686 -9.52248 -8.92263 -7.89409 -5.15188 -0.37361 -0.20660 1.29675 1.35702 1.48002 1.49624 1.55172 1.55561 1.93839 2.56553 2.59231 3.15568 3.24709 3.43387 3.44460 3.52192 3.68894 3.79203 3.87032 3.90220 4.05789 4.16861 4.26126 4.30582 4.41119 4.47214 4.55005 4.59847 4.66659 4.79285 4.84193 4.87512 4.93065 4.96825 5.04506 5.07813 5.14657 5.19467 5.27979 5.31620 5.36965 5.52972 5.54390 5.66227 5.72449 5.99640 6.20696 6.33702 6.35530 6.73585 7.04672 7.40063 8.19616 8.41478 9.33659 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002242 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.774537 B =12486.815654 C =12728.276329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.032 0.968 4 N -0.732 5.732 5 C -0.230 4.230 6 H 0.069 0.931 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.281 1.281 13 C -0.079 4.079 14 C -0.121 4.121 15 C 0.100 3.900 16 N -0.596 5.596 17 C 0.572 3.428 18 O -0.577 6.577 19 C -0.231 4.231 20 C 0.208 3.792 21 N -0.514 5.514 22 C 0.314 3.686 23 N -0.490 5.490 24 H 0.453 0.547 25 N -0.255 5.255 26 C 0.111 3.889 27 C -0.243 4.243 28 C 0.064 3.936 29 C 0.120 3.880 30 C -0.113 4.113 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.044 0.956 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.196 0.804 42 H 0.243 0.757 43 H 0.160 0.840 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 6.821 26.708 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.050 0.950 4 N -0.373 5.373 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.794 3.206 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.207 1.207 13 C -0.099 4.099 14 C -0.160 4.160 15 C -0.021 4.021 16 N -0.327 5.327 17 C 0.361 3.639 18 O -0.458 6.458 19 C -0.239 4.239 20 C 0.038 3.962 21 N -0.229 5.229 22 C 0.073 3.927 23 N -0.208 5.208 24 H 0.301 0.699 25 N -0.068 5.068 26 C -0.088 4.088 27 C -0.253 4.253 28 C 0.036 3.964 29 C -0.002 4.002 30 C -0.151 4.151 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.212 0.788 42 H 0.259 0.741 43 H 0.178 0.822 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.486 7.247 28.067 29.196 hybrid contribution 0.913 -0.267 -2.281 2.471 sum -2.572 6.980 25.786 26.838 Atomic orbital electron populations 1.22351 0.97769 1.00921 1.00568 1.20465 0.92653 0.94630 0.85912 0.94987 1.42578 1.78325 1.10263 1.06097 1.19498 1.34345 0.93874 0.88545 0.91307 1.25420 1.03488 0.96843 1.01044 1.69784 1.52926 1.09959 1.29196 0.85356 0.77777 0.77377 0.80140 1.20803 1.22407 1.20703 1.21267 0.94312 1.00039 0.94250 1.21968 1.02332 0.99057 0.92623 1.22273 0.77818 1.02691 0.99338 1.48144 1.08189 1.59666 1.16689 1.18178 0.85676 0.77695 0.82398 1.90788 1.16110 1.58343 1.80537 1.20462 1.02487 0.99708 1.01239 1.23241 0.88095 0.97976 0.86845 1.66806 1.32543 1.08700 1.14846 1.19438 0.92283 0.90613 0.90368 1.45915 1.31380 1.16184 1.27358 0.69927 1.76757 1.04536 1.03779 1.21732 1.25821 0.97532 0.95532 0.89943 1.20604 1.02058 1.00244 1.02441 1.21209 0.94811 0.90699 0.89724 1.21573 0.98639 0.97123 0.82858 1.21726 0.96438 1.00034 0.96936 0.90456 0.95412 0.93649 0.79482 0.94263 0.90910 0.92079 0.88241 0.88002 0.88285 0.78778 0.74142 0.82216 0.89924 0.90600 0.92339 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.14 71.98 0.66 -4.32 16 2 C 0.17 6.16 2.47 44.99 0.11 6.27 16 3 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 4 N -0.73 -34.95 4.41 -322.95 -1.42 -36.37 16 5 C -0.23 -12.49 9.93 84.03 0.83 -11.65 16 6 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 7 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 8 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 9 Si 0.96 46.05 29.55 68.60 2.03 48.08 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C -0.08 -2.18 1.79 -10.77 -0.02 -2.20 16 14 C -0.12 -2.35 5.04 30.67 0.15 -2.19 16 15 C 0.10 1.54 5.37 86.35 0.46 2.01 16 16 N -0.60 -12.75 2.97 -822.32 -2.44 -15.19 16 17 C 0.57 13.57 7.25 86.74 0.63 14.20 16 18 O -0.58 -18.34 16.47 -3.96 -0.07 -18.40 16 19 C -0.23 -4.26 5.01 -20.01 -0.10 -4.36 16 20 C 0.21 3.22 8.51 85.26 0.73 3.94 16 21 N -0.51 -9.01 10.37 -191.97 -1.99 -11.00 16 22 C 0.31 5.48 8.47 134.18 1.14 6.62 16 23 N -0.49 -7.21 7.33 -55.36 -0.41 -7.61 16 24 H 0.45 4.57 8.96 -213.51 -1.91 2.65 16 25 N -0.26 -3.78 12.54 -53.07 -0.67 -4.45 16 26 C 0.11 1.27 12.30 86.94 1.07 2.34 16 27 C -0.24 -3.83 6.36 -20.24 -0.13 -3.96 16 28 C 0.06 1.06 9.93 22.92 0.23 1.29 16 29 C 0.12 3.08 6.42 86.36 0.55 3.64 16 30 C -0.11 -3.43 5.22 30.67 0.16 -3.27 16 31 H 0.08 1.84 6.40 -2.39 -0.02 1.83 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.37 19.15 7.58 -92.71 -0.70 18.44 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.59 6.36 -2.39 -0.02 1.57 16 39 H 0.10 1.26 4.55 -2.38 -0.01 1.25 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.20 1.98 7.04 -2.91 -0.02 1.96 16 42 H 0.24 0.64 8.06 -2.91 -0.02 0.62 16 43 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 2.20 7.02 -2.39 -0.02 2.18 16 46 H 0.06 2.19 7.41 -2.38 -0.02 2.17 16 47 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -73.63 379.40 0.67 -72.96 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -1.59 Total: 25.50 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 6.94 Total: 4.52 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -6.65 Total: -132.66 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.07 Total: -18.40 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.63 0.67 -72.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714806734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.906 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds