Wall clock time and date at job start Wed Apr 1 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 C 1.52998 * 109.47072 * 175.00012 * 4 2 1 6 6 C 1.53010 * 109.46827 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46797 * 180.02562 * 6 5 4 8 8 C 1.36939 * 119.99744 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.38805 * 119.99918 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00207 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00198 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46833 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47196 * 119.99570 * 12 10 8 15 15 H 1.48490 * 109.47328 * 239.99949 * 12 10 8 16 16 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 17 17 C 1.34777 * 120.00258 * 275.00436 * 16 2 1 18 18 O 1.21565 * 120.00159 * 359.97438 * 17 16 2 19 19 C 1.47686 * 119.99721 * 179.97438 * 17 16 2 20 20 C 1.39689 * 120.08583 * 359.72361 * 19 17 16 21 21 C 1.37744 * 119.92247 * 179.73777 * 20 19 17 22 22 C 1.39027 * 120.08007 * 0.51303 * 21 20 19 23 23 N 1.39935 * 119.92006 * 179.73774 * 22 21 20 24 24 C 1.36309 * 126.86455 * 0.02738 * 23 22 21 25 25 C 1.34963 * 106.77539 * 179.97438 * 24 23 22 26 26 N 1.33368 * 109.02036 * 359.97438 * 25 24 23 27 27 N 1.28769 * 109.92412 * 359.71206 * 26 25 24 28 28 C 1.39027 * 120.15777 * 359.76483 * 22 21 20 29 29 C 1.37740 * 120.08020 * 359.97438 * 28 22 21 30 30 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 32 32 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 33 33 H 1.08998 * 109.47261 * 295.00245 * 4 2 1 34 34 H 1.09000 * 109.47285 * 54.99999 * 4 2 1 35 35 H 1.08995 * 109.47218 * 299.99474 * 5 4 2 36 36 H 1.09000 * 109.47102 * 60.00415 * 5 4 2 37 37 H 1.09002 * 109.46994 * 299.99653 * 6 5 4 38 38 H 1.09000 * 109.47065 * 60.00241 * 6 5 4 39 39 H 0.96998 * 120.00367 * 0.02562 * 7 6 5 40 40 H 0.96996 * 119.99985 * 180.02562 * 11 10 8 41 41 H 0.96999 * 119.99694 * 94.99826 * 16 2 1 42 42 H 1.08005 * 120.03874 * 359.97438 * 20 19 17 43 43 H 1.07996 * 119.95648 * 180.25419 * 21 20 19 44 44 H 1.08000 * 126.61398 * 359.96137 * 24 23 22 45 45 H 1.08001 * 125.49063 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.95945 * 179.97438 * 28 22 21 47 47 H 1.08003 * 120.04212 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0748 -1.3341 -2.5632 7 7 5.5349 -1.2312 -2.6246 8 6 6.2187 -1.8056 -3.6627 9 1 5.6816 -2.3340 -4.4364 10 6 7.6021 -1.7086 -3.7206 11 7 8.2567 -1.0641 -2.7779 12 14 8.5351 -2.4926 -5.1363 13 1 7.5747 -3.1532 -6.0564 14 1 9.2874 -1.4458 -5.8735 15 1 9.4847 -3.5027 -4.6043 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3571 18 8 1.8583 1.1615 2.4116 19 6 2.6388 -0.7144 3.5631 20 6 2.9656 -2.0713 3.5039 21 6 3.4291 -2.7161 4.6294 22 6 3.5617 -2.0208 5.8260 23 7 4.0277 -2.6806 6.9687 24 6 4.3895 -3.9912 7.0659 25 6 4.7741 -4.1954 8.3433 26 7 4.6573 -3.0524 9.0204 27 7 4.2231 -2.1234 8.2416 28 6 3.2319 -0.6717 5.8901 29 6 2.7729 -0.0191 4.7673 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2618 -2.1370 35 1 3.8532 0.4369 -1.3574 36 1 3.9994 -1.0728 -0.4259 37 1 3.7864 -2.3844 -2.5199 38 1 3.6402 -0.8741 -3.4507 39 1 6.0173 -0.7569 -1.9295 40 1 9.2234 -0.9960 -2.8186 41 1 2.2490 -1.6316 1.1527 42 1 2.8586 -2.6132 2.5758 43 1 3.6858 -3.7641 4.5832 44 1 4.3716 -4.7248 6.2735 45 1 5.1207 -5.1333 8.7515 46 1 3.3358 -0.1348 6.8214 47 1 2.5165 1.0288 4.8180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717691931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:39 Heat of formation + Delta-G solvation = 70.892852 kcal Electronic energy + Delta-G solvation = -28133.253698 eV Core-core repulsion = 24124.396771 eV Total energy + Delta-G solvation = -4008.856927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.26068 -41.41513 -39.79923 -37.94425 -36.51769 -35.60300 -34.23160 -33.01151 -32.25664 -31.68455 -31.12714 -30.31403 -27.22702 -26.13395 -24.82294 -24.51543 -23.43916 -22.43250 -22.25576 -21.86375 -21.45324 -19.72533 -19.13162 -18.84694 -17.53159 -16.94949 -16.67744 -16.40933 -16.31160 -16.11698 -15.88556 -15.63975 -15.36897 -15.31990 -15.20000 -14.84638 -14.62681 -14.49015 -14.15920 -13.86808 -13.77264 -13.41161 -13.16775 -12.99664 -12.98927 -12.80195 -12.37293 -12.32276 -12.25017 -12.18159 -12.16021 -12.02835 -11.84541 -11.69866 -11.47760 -11.08151 -10.93316 -10.48823 -10.28092 -10.15563 -9.60359 -8.99212 -7.95276 -5.24227 -0.85604 0.12697 0.49840 1.04160 1.47803 1.48749 1.51519 1.58840 1.76869 2.10528 2.56286 2.67107 3.25643 3.38882 3.49239 3.58497 3.66241 3.71273 3.83320 4.00228 4.02655 4.11660 4.13298 4.21968 4.31064 4.35810 4.43045 4.46161 4.61283 4.70148 4.78964 4.84528 4.86856 4.89572 4.94949 5.01144 5.05053 5.09607 5.16283 5.23538 5.34121 5.35185 5.39620 5.45691 5.52682 5.57435 5.76346 6.27583 6.50207 7.02232 7.16255 7.33193 8.11183 8.32322 9.28638 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.002249 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.327155 B =12444.763049 C =15032.208633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.243 4.243 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.974 3.026 13 H -0.264 1.264 14 H -0.296 1.296 15 H -0.292 1.292 16 N -0.704 5.704 17 C 0.556 3.444 18 O -0.578 6.578 19 C -0.143 4.143 20 C -0.051 4.051 21 C -0.120 4.120 22 C 0.151 3.849 23 N -0.326 5.326 24 C 0.041 3.959 25 C -0.079 4.079 26 N -0.263 5.263 27 N -0.111 5.111 28 C -0.125 4.125 29 C -0.047 4.047 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.413 0.587 42 H 0.171 0.829 43 H 0.180 0.820 44 H 0.247 0.753 45 H 0.225 0.775 46 H 0.140 0.860 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 -9.215 16.723 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.393 5.393 8 C -0.375 4.375 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.803 3.197 13 H -0.188 1.188 14 H -0.223 1.223 15 H -0.219 1.219 16 N -0.356 5.356 17 C 0.344 3.656 18 O -0.459 6.459 19 C -0.147 4.147 20 C -0.070 4.070 21 C -0.140 4.140 22 C 0.058 3.942 23 N -0.108 5.108 24 C -0.109 4.109 25 C -0.235 4.235 26 N -0.132 5.132 27 N -0.088 5.088 28 C -0.145 4.145 29 C -0.066 4.066 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.252 0.748 42 H 0.188 0.812 43 H 0.198 0.802 44 H 0.263 0.737 45 H 0.241 0.759 46 H 0.158 0.842 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.342 -7.234 17.479 25.663 hybrid contribution 1.310 -0.791 -0.868 1.759 sum -16.032 -8.024 16.611 24.440 Atomic orbital electron populations 1.22101 0.93662 1.03224 1.02325 1.21013 0.94856 0.96613 0.83656 0.91752 1.21760 0.93490 1.02473 0.97009 1.21608 0.96517 0.99652 0.97417 1.20878 0.83032 0.97582 0.96196 1.42673 1.02624 1.65921 1.28103 1.19709 0.89935 1.26122 1.01731 0.90410 1.25606 0.97608 1.02551 1.01394 1.69830 1.07009 1.48984 1.36461 0.85065 0.78511 0.77344 0.78808 1.18782 1.22309 1.21901 1.45945 1.66073 1.14686 1.08879 1.18415 0.77130 0.86094 0.83923 1.90767 1.52210 1.17274 1.85681 1.20108 1.05203 0.95548 0.93849 1.21491 0.93865 0.92127 0.99525 1.21192 1.01197 1.02453 0.89203 1.18018 0.99243 0.92620 0.84332 1.48183 1.44254 1.09128 1.09265 1.24517 0.98453 0.86181 1.01756 1.24011 1.08805 0.99242 0.91439 1.74332 1.11197 1.00815 1.26830 1.82146 1.22522 1.18471 0.85650 1.20892 1.00886 0.92744 1.00024 1.21166 0.94294 1.00732 0.90425 0.90552 0.93852 0.90344 0.88855 0.89148 0.93842 0.92050 0.95263 0.96408 0.79733 0.94073 0.74839 0.81151 0.80234 0.73714 0.75890 0.84213 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.48 71.98 0.68 -1.76 16 2 C 0.14 2.75 2.57 44.99 0.12 2.87 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.11 -2.03 4.75 30.59 0.15 -1.88 16 5 C -0.11 -3.21 5.22 30.60 0.16 -3.05 16 6 C 0.15 5.47 6.26 86.38 0.54 6.02 16 7 N -0.75 -37.49 5.60 -343.43 -1.92 -39.41 16 8 C -0.24 -13.38 9.99 84.03 0.84 -12.54 16 9 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 10 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 11 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 12 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 13 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 16 N -0.70 -12.51 4.48 -445.58 -2.00 -14.51 16 17 C 0.56 12.79 7.73 86.74 0.67 13.46 16 18 O -0.58 -18.10 16.00 -3.92 -0.06 -18.17 16 19 C -0.14 -2.64 5.88 -20.08 -0.12 -2.75 16 20 C -0.05 -0.58 9.53 22.50 0.21 -0.37 16 21 C -0.12 -1.19 9.46 22.34 0.21 -0.98 16 22 C 0.15 2.40 6.70 38.23 0.26 2.66 16 23 N -0.33 -5.59 3.85 -187.13 -0.72 -6.31 16 24 C 0.04 0.39 10.92 83.24 0.91 1.30 16 25 C -0.08 -0.99 11.86 83.71 0.99 0.00 16 26 N -0.26 -5.80 12.33 -58.72 -0.72 -6.53 16 27 N -0.11 -2.64 13.15 37.02 0.49 -2.15 16 28 C -0.13 -2.33 9.66 22.34 0.22 -2.11 16 29 C -0.05 -0.92 9.58 22.51 0.22 -0.70 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.71 7.75 -2.39 -0.02 1.69 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.37 19.98 7.67 -92.71 -0.71 19.27 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.41 4.87 6.63 -92.71 -0.61 4.25 16 42 H 0.17 0.90 6.40 -2.91 -0.02 0.88 16 43 H 0.18 0.31 6.82 -2.91 -0.02 0.29 16 44 H 0.25 -0.41 7.16 -2.91 -0.02 -0.43 16 45 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.14 2.68 7.72 -2.91 -0.02 2.66 16 47 H 0.14 2.90 7.64 -2.91 -0.02 2.88 16 Total: -1.00 -82.20 399.14 3.57 -78.63 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.32 Total: 24.05 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 6.52 Total: -3.94 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -4.59 Total: -128.06 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.06 Total: -18.17 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -82.20 3.57 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717691931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.522 kcal (2) G-P(sol) polarization free energy of solvation -82.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds