Wall clock time and date at job start Wed Apr 1 2020 02:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47462 * 2 1 4 4 C 1.53002 * 109.47252 * 240.00150 * 2 1 3 5 5 C 1.52995 * 109.47298 * 175.00218 * 4 2 1 6 6 C 1.53002 * 109.47408 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47398 * 179.97438 * 6 5 4 8 8 C 1.36933 * 119.99914 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00369 * 0.02562 * 8 7 6 10 10 C 1.38814 * 119.99905 * 179.97438 * 8 7 6 11 11 N 1.31612 * 119.99946 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00016 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47080 * 60.00142 * 12 10 8 14 14 H 1.48494 * 109.47003 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47107 * 300.00491 * 12 10 8 16 16 N 1.46502 * 109.47307 * 120.00004 * 2 1 3 17 17 C 1.34773 * 119.99878 * 275.00164 * 16 2 1 18 18 O 1.21605 * 120.00360 * 359.97438 * 17 16 2 19 19 C 1.47416 * 119.99891 * 179.97438 * 17 16 2 20 20 C 1.41335 * 126.40773 * 0.02710 * 19 17 16 21 21 N 1.30479 * 108.06284 * 179.97438 * 20 19 17 22 22 N 1.39939 * 108.91617 * 359.97438 * 21 20 19 23 23 C 1.40177 * 125.76746 * 180.26013 * 22 21 20 24 24 C 1.39263 * 120.48636 * 359.69657 * 23 22 21 25 25 C 1.38506 * 118.36102 * 179.97438 * 24 23 22 26 26 C 1.38271 * 119.23079 * 0.02562 * 25 24 23 27 27 N 1.31855 * 120.91553 * 359.97438 * 26 25 24 28 28 C 1.31821 * 121.79057 * 359.73026 * 27 26 25 29 29 C 1.34535 * 108.45645 * 0.02562 * 22 21 20 30 30 H 1.09001 * 109.46799 * 59.99754 * 1 2 3 31 31 H 1.08992 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46911 * 300.00126 * 1 2 3 33 33 H 1.09004 * 109.46753 * 295.00030 * 4 2 1 34 34 H 1.08997 * 109.47471 * 54.99981 * 4 2 1 35 35 H 1.08998 * 109.47333 * 299.99945 * 5 4 2 36 36 H 1.09007 * 109.47554 * 59.99689 * 5 4 2 37 37 H 1.08998 * 109.47139 * 300.00443 * 6 5 4 38 38 H 1.09006 * 109.46946 * 60.00045 * 6 5 4 39 39 H 0.96996 * 119.99868 * 0.02562 * 7 6 5 40 40 H 0.97001 * 120.00300 * 179.97438 * 11 10 8 41 41 H 0.97003 * 119.99987 * 94.99290 * 16 2 1 42 42 H 1.07993 * 125.96861 * 359.97438 * 20 19 17 43 43 H 1.07994 * 120.81528 * 359.95494 * 24 23 22 44 44 H 1.08003 * 120.38186 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.54338 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.66756 * 180.26964 * 28 27 26 47 47 H 1.08000 * 126.30755 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0749 -1.3351 -2.5626 7 7 5.5349 -1.2312 -2.6246 8 6 6.2187 -1.8062 -3.6623 9 1 5.6818 -2.3360 -4.4353 10 6 7.6021 -1.7074 -3.7214 11 7 8.2565 -1.0614 -2.7797 12 14 8.5349 -2.4912 -5.1373 13 1 8.0779 -1.8981 -6.4197 14 1 9.9896 -2.2451 -4.9682 15 1 8.2789 -3.9539 -5.1494 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0183 2.3571 18 8 1.8582 1.1617 2.4117 19 6 2.6379 -0.7133 3.5609 20 6 3.0111 -2.0736 3.6506 21 7 3.3901 -2.3091 4.8767 22 7 3.2803 -1.1286 5.6202 23 6 3.6008 -0.9820 6.9769 24 6 4.0700 -2.0669 7.7133 25 6 4.3738 -1.8724 9.0505 26 6 4.2022 -0.6181 9.6064 27 7 3.7558 0.3889 8.8816 28 6 3.4605 0.2481 7.6046 29 6 2.8202 -0.1571 4.8113 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7516 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1370 35 1 3.8532 0.4369 -1.3573 36 1 3.9995 -1.0728 -0.4259 37 1 3.7865 -2.3853 -2.5186 38 1 3.6403 -0.8759 -3.4506 39 1 6.0172 -0.7558 -1.9302 40 1 9.2232 -0.9926 -2.8207 41 1 2.2490 -1.6318 1.1526 42 1 2.9866 -2.7924 2.8451 43 1 4.1937 -3.0360 7.2530 44 1 4.7404 -2.6911 9.6521 45 1 4.4371 -0.4608 10.6488 46 1 3.1013 1.0973 7.0422 47 1 2.6291 0.8690 5.0888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734242559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:01 Heat of formation + Delta-G solvation = 83.155134 kcal Electronic energy + Delta-G solvation = -28049.315142 eV Core-core repulsion = 24040.989947 eV Total energy + Delta-G solvation = -4008.325195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19830 -40.50269 -39.48251 -36.69836 -34.82518 -34.63890 -32.89979 -32.56347 -31.36664 -30.65731 -29.81113 -29.24318 -25.71249 -24.99088 -24.50537 -23.27194 -22.61722 -21.57375 -20.88140 -20.67444 -20.26773 -19.03078 -17.57619 -17.01469 -16.91497 -16.38083 -16.31167 -16.05380 -15.38913 -14.88335 -14.66034 -14.59641 -14.51455 -14.18870 -13.98121 -13.73882 -13.71391 -13.45757 -13.23692 -12.96904 -12.73239 -12.66093 -12.17460 -12.08653 -11.59468 -11.30809 -11.26332 -11.13140 -10.83079 -10.78636 -10.46058 -10.38507 -10.32746 -10.22591 -10.02102 -9.94780 -9.67016 -9.65389 -9.11876 -8.84416 -8.72635 -6.89416 -5.73960 -3.02639 0.04031 0.56626 1.41799 1.66833 1.82716 3.13226 3.18383 3.30679 3.45186 3.49184 3.50657 3.76745 3.85094 4.04734 4.29662 4.31961 4.45795 4.57909 4.67582 4.79181 4.79741 4.85690 5.01396 5.06686 5.17633 5.29115 5.41401 5.44789 5.47517 5.59077 5.59847 5.65755 5.80088 5.81737 5.93374 6.01124 6.09305 6.14715 6.23560 6.38272 6.43002 6.43581 6.51122 6.89291 6.92459 6.99815 7.27251 7.48245 7.71122 8.19614 8.45130 9.55730 10.15251 10.49407 11.48942 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.002057 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.233803 B =13612.068428 C =15675.999863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.734 5.734 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.715 5.715 17 C 0.596 3.404 18 O -0.548 6.548 19 C -0.274 4.274 20 C 0.098 3.902 21 N -0.289 5.289 22 N -0.312 5.312 23 C 0.106 3.894 24 C -0.071 4.071 25 C -0.147 4.147 26 C 0.089 3.911 27 N -0.456 5.456 28 C 0.089 3.911 29 C 0.127 3.873 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.400 0.600 42 H 0.200 0.800 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.713 -1.336 23.694 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.378 5.378 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.366 5.366 17 C 0.383 3.617 18 O -0.426 6.426 19 C -0.288 4.288 20 C -0.091 4.091 21 N -0.106 5.106 22 N -0.085 5.085 23 C 0.011 3.989 24 C -0.098 4.098 25 C -0.167 4.167 26 C -0.068 4.068 27 N -0.164 5.164 28 C -0.071 4.071 29 C -0.020 4.020 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.234 0.766 42 H 0.216 0.784 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.182 0.818 46 H 0.181 0.819 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.532 -0.629 24.835 29.299 hybrid contribution 0.763 -1.070 -1.633 2.096 sum -14.769 -1.699 23.202 27.556 Atomic orbital electron populations 1.22173 0.95435 1.02003 1.02427 1.21051 0.93575 0.97845 0.83626 0.89185 1.21855 0.96886 1.00784 0.96609 1.21735 0.93634 1.01493 0.99506 1.20654 0.86174 0.96426 0.94253 1.42373 1.00220 1.66185 1.29058 1.19199 0.89442 1.27109 1.01357 0.91265 1.24758 0.96479 1.01257 0.98667 1.69651 1.07253 1.46923 1.34460 0.86256 0.78975 0.78953 0.81945 1.21272 1.21696 1.21290 1.45844 1.67316 1.14028 1.09386 1.17084 0.76808 0.85797 0.81986 1.90779 1.51350 1.15382 1.85127 1.20383 1.18135 0.95010 0.95252 1.24318 0.94620 0.95440 0.94770 1.77275 1.24603 1.03868 1.04877 1.45526 1.48173 1.07979 1.06857 1.18711 1.02449 0.96858 0.80885 1.21443 0.95649 0.98928 0.93823 1.22171 1.00314 0.99401 0.94799 1.22940 0.94956 0.88431 1.00493 1.67794 1.10154 1.33228 1.05265 1.22648 0.98404 0.94613 0.91445 1.23043 0.94069 0.95468 0.89432 0.91545 0.92534 0.92289 0.91396 0.90229 0.91934 0.92019 0.96584 0.96525 0.78336 0.93484 0.76593 0.78368 0.83018 0.83477 0.81758 0.81854 0.78902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.19 16 2 C 0.14 1.58 2.57 -67.93 -0.17 1.41 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -1.95 5.22 -26.73 -0.14 -2.09 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.01 16 7 N -0.73 -18.98 5.60 -59.90 -0.34 -19.32 16 8 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 12 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 N -0.71 -7.55 4.52 -54.89 -0.25 -7.80 16 17 C 0.60 7.41 7.78 -12.53 -0.10 7.31 16 18 O -0.55 -8.55 16.56 5.27 0.09 -8.46 16 19 C -0.27 -2.95 6.13 -105.05 -0.64 -3.60 16 20 C 0.10 0.94 11.50 -16.95 -0.19 0.74 16 21 N -0.29 -3.14 11.85 30.87 0.37 -2.77 16 22 N -0.31 -3.15 3.77 -10.11 -0.04 -3.18 16 23 C 0.11 0.93 6.70 -83.45 -0.56 0.37 16 24 C -0.07 -0.53 9.77 -39.10 -0.38 -0.92 16 25 C -0.15 -0.79 10.10 -39.47 -0.40 -1.19 16 26 C 0.09 0.54 11.18 -17.53 -0.20 0.34 16 27 N -0.46 -3.82 10.35 -13.09 -0.14 -3.96 16 28 C 0.09 0.72 10.62 -17.34 -0.18 0.53 16 29 C 0.13 1.24 10.62 -16.43 -0.17 1.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 37 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.40 3.37 7.56 -40.82 -0.31 3.06 16 42 H 0.20 1.28 7.50 -52.49 -0.39 0.88 16 43 H 0.15 1.10 7.77 -52.49 -0.41 0.69 16 44 H 0.15 0.37 8.06 -52.48 -0.42 -0.05 16 45 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 46 H 0.16 0.99 6.74 -52.48 -0.35 0.63 16 47 H 0.19 1.43 7.04 -52.49 -0.37 1.06 16 LS Contribution 401.76 15.07 6.05 6.05 Total: -1.00 -36.60 401.76 -8.46 -45.06 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.72 Total: 8.08 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.19 Total: -3.27 kcal Atomic # 7 Polarization: -65.44 SS G_CDS: 0.33 Total: -65.10 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.60 -8.46 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734242559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.215 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds