Wall clock time and date at job start Wed Apr 1 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35991 * 126.35696 * 2 1 4 4 N 1.30280 * 110.05662 * 180.02562 * 3 2 1 5 5 C 1.34648 * 109.67111 * 359.97438 * 4 3 2 6 6 C 1.37941 * 126.35838 * 180.02562 * 2 1 3 7 7 N 1.32109 * 133.80980 * 359.93722 * 6 2 1 8 8 C 1.31729 * 121.94893 * 180.02562 * 7 6 2 9 9 C 1.38337 * 121.54968 * 359.73299 * 8 7 6 10 10 C 1.39647 * 119.37029 * 0.52047 * 9 8 7 11 11 C 1.47765 * 121.06915 * 179.76929 * 10 9 8 12 12 O 1.21565 * 119.99750 * 179.71807 * 11 10 9 13 13 N 1.34773 * 120.00319 * 0.02562 * 11 10 9 14 14 C 1.46499 * 120.00343 * 179.72343 * 13 11 10 15 15 C 1.52998 * 109.47529 * 175.12546 * 14 13 11 16 16 N 1.46504 * 110.01384 * 303.90111 * 15 14 13 17 17 C 1.36942 * 119.99718 * 301.45995 * 16 15 14 18 18 H 1.07989 * 120.00232 * 354.60842 * 17 16 15 19 19 C 1.38811 * 119.99496 * 174.60441 * 17 16 15 20 20 N 1.31622 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00008 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46957 * 90.00186 * 21 19 17 23 23 H 1.48501 * 109.47176 * 210.00598 * 21 19 17 24 24 H 1.48496 * 109.46787 * 330.00344 * 21 19 17 25 25 C 1.54269 * 110.03187 * 182.46177 * 15 14 13 26 26 C 1.54892 * 104.19066 * 217.10426 * 25 15 14 27 27 C 1.54888 * 102.75062 * 37.94340 * 26 25 15 28 28 C 1.53872 * 110.03134 * 65.29184 * 15 14 13 29 29 H 1.09006 * 109.47102 * 89.97629 * 1 2 3 30 30 H 1.09006 * 109.47140 * 209.97306 * 1 2 3 31 31 H 1.08994 * 109.47323 * 329.97603 * 1 2 3 32 32 H 1.07995 * 124.96937 * 0.04201 * 3 2 1 33 33 H 1.07998 * 119.22710 * 179.97438 * 8 7 6 34 34 H 1.07990 * 120.31549 * 180.29613 * 9 8 7 35 35 H 0.97006 * 119.99810 * 359.71661 * 13 11 10 36 36 H 1.09005 * 109.46516 * 295.12683 * 14 13 11 37 37 H 1.09001 * 109.47259 * 55.11766 * 14 13 11 38 38 H 0.97002 * 119.99847 * 121.46211 * 16 15 14 39 39 H 0.97011 * 119.99490 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.48680 * 335.77954 * 25 15 14 41 41 H 1.08997 * 110.48639 * 98.42774 * 25 15 14 42 42 H 1.08999 * 110.75462 * 279.62237 * 26 25 15 43 43 H 1.08998 * 110.75233 * 156.25748 * 26 25 15 44 44 H 1.09004 * 110.48501 * 203.38315 * 27 26 25 45 45 H 1.08995 * 110.48764 * 80.73202 * 27 26 25 46 46 H 1.08999 * 110.02946 * 238.56915 * 28 15 14 47 47 H 1.08998 * 110.03429 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2711 1.0952 0.0000 4 7 3.5215 0.7295 -0.0005 5 6 3.6007 -0.6146 -0.0004 6 6 2.2827 -1.1109 -0.0005 7 7 2.0571 -2.4126 0.0000 8 6 3.0394 -3.2902 -0.0002 9 6 4.3646 -2.8934 -0.0064 10 6 4.6717 -1.5312 -0.0016 11 6 6.0741 -1.0655 -0.0028 12 8 6.3191 0.1252 -0.0037 13 7 7.0814 -1.9608 -0.0092 14 6 8.4718 -1.4992 -0.0165 15 6 9.4094 -2.7026 0.0998 16 7 9.0860 -3.4760 1.3012 17 6 9.1326 -2.8791 2.5328 18 1 9.4911 -1.8649 2.6282 19 6 8.7190 -3.5778 3.6587 20 7 8.2824 -4.8141 3.5425 21 14 8.7818 -2.7635 5.3387 22 1 7.4951 -2.0704 5.6013 23 1 9.0096 -3.7963 6.3812 24 1 9.8909 -1.7766 5.3691 25 6 10.8758 -2.2265 0.1553 26 6 11.6528 -3.2951 -0.6530 27 6 10.6769 -3.6254 -1.8096 28 6 9.2830 -3.5919 -1.1495 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 1.9253 2.1183 0.0006 33 1 2.8047 -4.3444 0.0006 34 1 5.1542 -3.6301 -0.0113 35 1 6.8859 -2.9110 -0.0088 36 1 8.6738 -0.9698 -0.9477 37 1 8.6361 -0.8277 0.8262 38 1 8.8388 -4.4108 1.2243 39 1 7.9937 -5.3025 4.3295 40 1 10.9767 -1.2468 -0.3117 41 1 11.2284 -2.1970 1.1863 42 1 11.8423 -4.1785 -0.0433 43 1 12.5853 -2.8842 -1.0399 44 1 10.8845 -4.6167 -2.2125 45 1 10.7458 -2.8716 -2.5938 46 1 8.9819 -4.5992 -0.8618 47 1 8.5540 -3.1660 -1.8389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:04 Heat of formation + Delta-G solvation = 70.475407 kcal Electronic energy + Delta-G solvation = -30285.822155 eV Core-core repulsion = 26276.947126 eV Total energy + Delta-G solvation = -4008.875029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43427 -39.49281 -38.41932 -37.75462 -34.55487 -34.05001 -33.32324 -32.02818 -30.50971 -29.76439 -28.25663 -27.81250 -27.32849 -25.20392 -24.02834 -23.14754 -22.92455 -21.62839 -20.35132 -19.60834 -18.64356 -17.92023 -17.47014 -17.15784 -16.91285 -16.24737 -15.68253 -15.31498 -14.99999 -14.60628 -14.51387 -14.49749 -14.05590 -13.94744 -13.66291 -13.42780 -13.30736 -13.04654 -12.74776 -12.66864 -12.46204 -12.35298 -11.89201 -11.43209 -11.08780 -10.82857 -10.76122 -10.72213 -10.70525 -10.61994 -10.49379 -10.21878 -10.12390 -9.84195 -9.74448 -9.62733 -9.06468 -8.88347 -8.77751 -8.55488 -8.31865 -6.99631 -5.79575 -3.08014 0.45741 1.15423 2.19223 2.74010 3.25656 3.44277 3.50315 3.51651 3.58205 4.01196 4.06732 4.21427 4.43015 4.58725 4.75531 4.83361 4.86148 4.94949 5.10761 5.12573 5.14541 5.20060 5.25103 5.52368 5.57858 5.70216 5.78027 5.83284 5.88135 5.95796 5.96701 6.05844 6.10537 6.20085 6.28449 6.32547 6.46387 6.53307 6.58194 6.62939 6.78878 6.80245 6.84412 7.02408 7.12895 7.73494 7.74022 7.76154 8.09354 8.39331 8.75272 9.51613 10.04647 10.40202 11.42467 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.003523 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.316915 B = 7945.613843 C = 9131.177812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.488 5.488 3 C 0.265 3.735 4 N -0.459 5.459 5 C 0.051 3.949 6 C 0.229 3.771 7 N -0.472 5.472 8 C 0.134 3.866 9 C -0.145 4.145 10 C -0.025 4.025 11 C 0.548 3.452 12 O -0.519 6.519 13 N -0.693 5.693 14 C 0.121 3.879 15 C 0.189 3.811 16 N -0.711 5.711 17 C -0.231 4.231 18 H 0.069 0.931 19 C -0.007 4.007 20 N -0.931 5.931 21 Si 0.899 3.101 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.132 4.132 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.127 4.127 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.222 0.778 33 H 0.173 0.827 34 H 0.152 0.848 35 H 0.400 0.600 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.384 0.616 39 H 0.254 0.746 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.689 4.228 -11.931 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.182 5.182 3 C -0.021 4.021 4 N -0.176 5.176 5 C -0.072 4.072 6 C -0.007 4.007 7 N -0.186 5.186 8 C -0.032 4.032 9 C -0.168 4.168 10 C -0.038 4.038 11 C 0.333 3.667 12 O -0.395 6.395 13 N -0.343 5.343 14 C -0.005 4.005 15 C 0.096 3.904 16 N -0.352 5.352 17 C -0.362 4.362 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.580 5.580 21 Si 0.730 3.270 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.207 1.207 25 C -0.172 4.172 26 C -0.154 4.154 27 C -0.158 4.158 28 C -0.165 4.165 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.238 0.762 33 H 0.190 0.810 34 H 0.169 0.831 35 H 0.236 0.764 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.800 5.498 -11.764 17.546 hybrid contribution -0.220 -0.558 1.203 1.344 sum -12.020 4.941 -10.561 16.746 Atomic orbital electron populations 1.21982 0.75463 1.04810 1.03530 1.45072 1.07560 1.04609 1.60914 1.25677 0.84904 0.93163 0.98332 1.70338 1.17270 1.10779 1.19255 1.19193 0.91938 0.91247 1.04849 1.18922 0.88931 0.88081 1.04738 1.66156 1.38155 0.99409 1.14869 1.22500 0.87146 0.98401 0.95136 1.22281 0.98944 0.94863 1.00752 1.19817 0.93048 0.91938 0.98969 1.17874 0.84184 0.86392 0.78282 1.90802 1.84348 1.15623 1.48756 1.45622 1.05983 1.09690 1.73049 1.21912 0.80098 0.98020 1.00449 1.20469 0.92097 0.90200 0.87587 1.42547 1.81783 1.10435 1.00453 1.19086 1.35271 0.97559 0.84317 0.91259 1.24649 1.01643 0.96354 0.97670 1.69644 1.49697 1.09920 1.28696 0.86310 0.77762 0.78212 0.84674 1.21863 1.21885 1.20747 1.22823 0.96304 0.96949 1.01112 1.22384 0.97025 0.99507 0.96528 1.22300 0.95370 1.00498 0.97649 1.22443 0.97035 1.00378 0.96620 0.90720 0.89334 0.89309 0.76189 0.81044 0.83056 0.76381 0.92961 0.91306 0.78125 0.93633 0.92879 0.90262 0.91403 0.92748 0.92367 0.92281 0.91249 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.20 59.84 0.67 1.21 16 2 N -0.49 -5.59 3.20 -124.98 -0.40 -5.99 16 3 C 0.26 3.09 12.50 -89.69 -1.12 1.97 16 4 N -0.46 -7.92 10.63 -11.88 -0.13 -8.04 16 5 C 0.05 0.91 6.85 -84.62 -0.58 0.33 16 6 C 0.23 3.46 8.02 -155.65 -1.25 2.22 16 7 N -0.47 -6.75 10.35 -12.30 -0.13 -6.88 16 8 C 0.13 1.71 11.14 -17.56 -0.20 1.51 16 9 C -0.15 -2.07 9.60 -39.02 -0.37 -2.44 16 10 C -0.02 -0.44 5.93 -104.45 -0.62 -1.06 16 11 C 0.55 10.97 7.79 -12.37 -0.10 10.87 16 12 O -0.52 -12.08 16.19 5.31 0.09 -12.00 16 13 N -0.69 -12.71 5.06 -61.28 -0.31 -13.02 16 14 C 0.12 2.28 3.99 -4.04 -0.02 2.26 16 15 C 0.19 3.39 0.68 -130.70 -0.09 3.31 16 16 N -0.71 -15.76 4.76 -46.20 -0.22 -15.98 16 17 C -0.23 -5.97 8.39 -15.06 -0.13 -6.10 16 18 H 0.07 1.82 7.23 -52.49 -0.38 1.44 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -26.45 13.06 55.49 0.73 -25.73 16 21 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 C -0.13 -2.26 5.94 -25.07 -0.15 -2.41 16 26 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 27 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 28 C -0.13 -1.89 5.80 -25.61 -0.15 -2.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.22 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.15 1.88 6.53 -52.49 -0.34 1.53 16 35 H 0.40 6.80 6.13 -40.82 -0.25 6.55 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.50 7.49 -51.93 -0.39 1.11 16 38 H 0.38 9.04 7.28 -40.82 -0.30 8.74 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 41 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.06 7.44 -51.93 -0.39 0.67 16 47 H 0.06 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.58 385.37 -10.70 -46.28 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -6.58 Total: 12.52 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -4.53 Total: 5.64 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -0.46 Total: -75.65 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.58 -10.70 -46.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.751 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds