Wall clock time and date at job start Wed Apr 1 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47369 * 2 1 4 4 C 1.42895 * 114.00141 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.85184 * 21.68808 * 4 3 2 6 6 C 1.53780 * 113.61160 * 250.49497 * 4 3 2 7 7 C 1.53786 * 87.08019 * 219.93198 * 6 4 3 8 8 C 1.52990 * 113.61603 * 270.79802 * 7 6 4 9 9 O 1.42899 * 109.47247 * 283.90502 * 8 7 6 10 10 N 1.46501 * 113.61143 * 139.97694 * 7 6 4 11 11 C 1.34781 * 120.00010 * 185.71836 * 10 7 6 12 12 O 1.21585 * 119.99647 * 355.24280 * 11 10 7 13 13 N 1.34772 * 120.00281 * 175.23064 * 11 10 7 14 14 C 1.46494 * 120.00307 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.47631 * 180.02562 * 14 13 11 16 16 O 1.21299 * 119.99656 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00464 * 179.72450 * 15 14 13 18 18 C 1.37097 * 120.00342 * 180.27464 * 17 15 14 19 19 H 1.07997 * 119.99750 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00405 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99535 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47161 * 90.00013 * 22 20 18 24 24 H 1.48494 * 109.47292 * 209.99844 * 22 20 18 25 25 H 1.48492 * 109.47218 * 330.00275 * 22 20 18 26 26 C 1.53778 * 113.69008 * 152.96087 * 4 3 2 27 27 C 1.52995 * 113.61710 * 25.43917 * 26 4 3 28 28 C 1.53002 * 113.61025 * 254.53520 * 26 4 3 29 29 H 1.09004 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47191 * 300.00244 * 1 2 3 31 31 H 1.09007 * 109.46925 * 60.00407 * 1 2 3 32 32 H 1.08996 * 109.47191 * 239.99756 * 2 1 3 33 33 H 1.09006 * 109.46778 * 120.00122 * 2 1 3 34 34 H 1.09000 * 113.61746 * 105.38753 * 6 4 3 35 35 H 1.09002 * 113.69624 * 334.49056 * 6 4 3 36 36 H 1.08998 * 109.46942 * 43.90791 * 8 7 6 37 37 H 1.08997 * 109.47180 * 163.90460 * 8 7 6 38 38 H 0.96707 * 113.99749 * 179.97438 * 9 8 7 39 39 H 0.97003 * 120.00186 * 5.72647 * 10 7 6 40 40 H 0.97001 * 119.99600 * 0.02562 * 13 11 10 41 41 H 1.09006 * 109.46659 * 60.00674 * 14 13 11 42 42 H 1.08999 * 109.47360 * 300.00646 * 14 13 11 43 43 H 0.97004 * 119.99858 * 0.28131 * 17 15 14 44 44 H 0.96998 * 119.99192 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.46957 * 157.49577 * 27 26 4 46 46 H 1.09000 * 109.47283 * 277.49996 * 27 26 4 47 47 H 1.09000 * 109.46983 * 37.50029 * 27 26 4 48 48 H 1.08992 * 109.47867 * 322.50185 * 28 26 4 49 49 H 1.09004 * 109.46885 * 82.50605 * 28 26 4 50 50 H 1.09005 * 109.46970 * 202.50288 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9264 0.5631 -0.3721 6 6 4.0083 1.9775 1.3274 7 6 4.9934 2.8058 0.4857 8 6 6.2893 2.0640 0.1525 9 8 7.1326 2.0367 1.3059 10 7 5.2281 4.1522 1.0132 11 6 5.9782 5.0281 0.3155 12 8 6.5311 4.6746 -0.7080 13 7 6.1152 6.2957 0.7522 14 6 6.9300 7.2479 -0.0064 15 6 6.9204 8.5841 0.6902 16 8 6.2948 8.7269 1.7195 17 7 7.6118 9.6188 0.1728 18 6 7.6076 10.8330 0.8095 19 1 7.0506 10.9601 1.7260 20 6 8.3200 11.8999 0.2758 21 7 8.9982 11.7450 -0.8391 22 14 8.3149 13.5539 1.1438 23 1 9.4403 13.6088 2.1112 24 1 8.4700 14.6391 0.1421 25 1 7.0305 13.7288 1.8683 26 6 3.9475 2.7593 -0.6408 27 6 2.9406 3.9101 -0.5902 28 6 4.5532 2.5585 -2.0314 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.4889 1.2034 1.9257 35 1 3.3086 2.5837 1.9028 36 1 6.0559 1.0435 -0.1512 37 1 6.8026 2.5767 -0.6608 38 1 7.9739 1.5804 1.1672 39 1 4.8438 4.4134 1.8647 40 1 5.6742 6.5776 1.5689 41 1 6.5196 7.3581 -1.0102 42 1 7.9538 6.8795 -0.0708 43 1 8.1123 9.5045 -0.6502 44 1 9.4958 12.4897 -1.2114 45 1 3.4693 4.8594 -0.6761 46 1 2.2344 3.8115 -1.4147 47 1 2.4008 3.8792 0.3562 48 1 5.1008 1.6164 -2.0568 49 1 3.7564 2.5359 -2.7749 50 1 5.2340 3.3804 -2.2533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358303531.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:24 Heat of formation + Delta-G solvation = -140.517480 kcal Electronic energy + Delta-G solvation = -31338.479244 eV Core-core repulsion = 26980.853207 eV Total energy + Delta-G solvation = -4357.626038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.36061 -39.27719 -38.12776 -37.29728 -36.12992 -34.34193 -33.62086 -33.21383 -31.40412 -31.33157 -30.64165 -28.32473 -27.56437 -26.20782 -24.48715 -23.49039 -22.93032 -22.35150 -20.57912 -19.55657 -18.45658 -18.33869 -17.87413 -17.39777 -17.18226 -15.97875 -15.82312 -15.58028 -15.46690 -15.21645 -14.91017 -14.66703 -14.42673 -14.28038 -13.82644 -13.73680 -13.55052 -13.39878 -13.25565 -13.09310 -12.70303 -12.44144 -12.25805 -12.13400 -12.10134 -11.92597 -11.80142 -11.60440 -11.53669 -11.49381 -11.10811 -10.97380 -10.75616 -10.56579 -10.43999 -10.34959 -10.27771 -9.60626 -9.58967 -9.48457 -8.96236 -8.58348 -8.50802 -8.06684 -6.48633 -3.90398 2.82771 3.13766 3.23827 3.29378 3.41306 3.51007 3.78937 3.82359 4.09659 4.12326 4.32648 4.41285 4.55923 4.70047 4.72609 4.90037 4.94848 5.01195 5.01789 5.10232 5.18703 5.20241 5.29111 5.31898 5.43398 5.55846 5.59867 5.64292 5.72745 5.76954 5.84072 5.84682 5.94372 5.97112 6.03615 6.06033 6.12683 6.30128 6.32811 6.67018 6.85800 6.97908 7.20833 7.48813 7.53946 7.95799 8.34935 8.48817 8.91843 9.07881 9.43056 9.91228 10.68356 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021678 B = 0.002090 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.337396 B =13391.225611 C =13834.129590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.071 3.929 5 H 0.088 0.912 6 C -0.153 4.153 7 C 0.190 3.810 8 C 0.080 3.920 9 O -0.565 6.565 10 N -0.723 5.723 11 C 0.712 3.288 12 O -0.596 6.596 13 N -0.726 5.726 14 C 0.131 3.869 15 C 0.429 3.571 16 O -0.597 6.597 17 N -0.550 5.550 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.074 4.074 27 C -0.110 4.110 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.377 0.623 39 H 0.397 0.603 40 H 0.406 0.594 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.396 0.604 44 H 0.274 0.726 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.739 -25.159 -0.641 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.013 3.987 5 H 0.105 0.895 6 C -0.191 4.191 7 C 0.101 3.899 8 C 0.002 3.998 9 O -0.370 6.370 10 N -0.377 5.377 11 C 0.412 3.588 12 O -0.476 6.476 13 N -0.383 5.383 14 C 0.002 3.998 15 C 0.215 3.785 16 O -0.484 6.484 17 N -0.185 5.185 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.536 5.536 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.076 4.076 27 C -0.167 4.167 28 C -0.200 4.200 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.223 0.777 39 H 0.232 0.768 40 H 0.243 0.757 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.153 -24.694 -0.762 27.106 hybrid contribution 0.678 0.452 0.417 0.915 sum -10.475 -24.241 -0.346 26.410 Atomic orbital electron populations 1.21740 0.93800 1.02125 1.03201 1.22507 0.95608 0.84212 0.99879 1.87972 1.20059 1.25847 1.94504 1.23693 0.81420 0.97528 0.96075 0.89451 1.23787 0.97725 1.00010 0.97581 1.21125 0.92083 0.81825 0.94830 1.22380 0.90706 0.97440 0.89300 1.86451 1.32661 1.81204 1.36703 1.44709 1.56249 1.12009 1.24757 1.15771 0.79322 0.80453 0.83221 1.90796 1.52506 1.78167 1.26087 1.44777 1.54565 1.08875 1.30058 1.20737 0.95895 0.88080 0.95051 1.19802 0.85272 0.85739 0.87698 1.90494 1.47972 1.83888 1.26039 1.41786 1.42942 1.09349 1.24455 1.19722 1.29275 0.86116 1.08218 0.87723 1.25321 0.96111 1.00162 0.96197 1.69621 1.31181 1.33363 1.19391 0.85812 0.78930 0.80603 0.78676 1.20306 1.20830 1.19350 1.22515 0.94798 0.95086 0.95195 1.21270 0.97075 0.96219 1.02163 1.21841 1.00934 1.02473 0.94738 0.91269 0.91831 0.91835 0.93492 0.93497 0.90159 0.88377 0.93808 0.89854 0.77662 0.76829 0.75727 0.90153 0.90179 0.77049 0.91646 0.92275 0.92258 0.92199 0.93013 0.92654 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.05 0.39 6.51 37.16 0.24 0.63 16 3 O -0.37 -3.51 9.45 -35.23 -0.33 -3.84 16 4 C 0.07 0.65 3.35 -25.92 -0.09 0.56 16 5 H 0.09 0.67 7.18 -51.93 -0.37 0.30 16 6 C -0.15 -1.43 6.84 -25.92 -0.18 -1.60 16 7 C 0.19 2.13 0.72 -131.01 -0.09 2.03 16 8 C 0.08 0.89 4.68 37.15 0.17 1.07 16 9 O -0.57 -6.51 13.53 -35.23 -0.48 -6.99 16 10 N -0.72 -9.29 4.22 -51.66 -0.22 -9.51 16 11 C 0.71 11.51 7.63 -86.92 -0.66 10.84 16 12 O -0.60 -10.79 12.88 5.29 0.07 -10.72 16 13 N -0.73 -12.45 5.53 -66.42 -0.37 -12.82 16 14 C 0.13 2.47 6.15 -5.20 -0.03 2.44 16 15 C 0.43 9.99 7.85 -10.99 -0.09 9.90 16 16 O -0.60 -15.50 15.24 5.54 0.08 -15.41 16 17 N -0.55 -13.80 5.29 -10.97 -0.06 -13.86 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 21 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 22 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C -0.07 -0.80 1.24 -153.70 -0.19 -0.99 16 27 C -0.11 -1.27 7.88 37.16 0.29 -0.98 16 28 C -0.14 -1.53 8.12 37.16 0.30 -1.23 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.10 0.91 7.66 -51.93 -0.40 0.52 16 36 H 0.04 0.38 6.96 -51.93 -0.36 0.02 16 37 H 0.08 1.11 5.75 -51.93 -0.30 0.82 16 38 H 0.38 2.80 9.12 45.56 0.42 3.22 16 39 H 0.40 4.51 8.68 -40.82 -0.35 4.16 16 40 H 0.41 6.91 7.46 -40.82 -0.30 6.61 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.06 0.79 7.17 -51.93 -0.37 0.42 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.67 7.19 -51.93 -0.37 0.30 16 48 H 0.05 0.47 6.99 -51.93 -0.36 0.11 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 1.08 6.75 -51.93 -0.35 0.73 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -32.65 402.15 -6.91 -39.56 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -7.19 Total: 20.97 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -0.18 Total: 14.20 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.08 Total: -59.54 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.66 Total: -36.96 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.65 -6.91 -39.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358303531.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.959 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds