Wall clock time and date at job start Wed Apr 1 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47183 * 2 1 4 4 C 1.42900 * 114.00447 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.90583 * 21.74429 * 4 3 2 6 6 C 1.53774 * 113.61443 * 250.49504 * 4 3 2 7 7 C 1.53779 * 87.07918 * 220.01236 * 6 4 3 8 8 C 1.53007 * 113.61210 * 140.06574 * 7 6 4 9 9 O 1.42901 * 109.46985 * 76.91881 * 8 7 6 10 10 N 1.46497 * 113.61861 * 270.87797 * 7 6 4 11 11 C 1.34777 * 120.00195 * 183.14669 * 10 7 6 12 12 O 1.21583 * 119.99982 * 355.29840 * 11 10 7 13 13 N 1.34779 * 120.00017 * 175.30678 * 11 10 7 14 14 C 1.46494 * 119.99898 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47220 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99604 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00365 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00273 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99625 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99880 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00381 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99646 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47377 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47177 * 120.00290 * 22 20 18 25 25 H 1.48498 * 109.47109 * 240.00475 * 22 20 18 26 26 C 1.53772 * 87.08198 * 25.43441 * 7 6 4 27 27 C 1.52998 * 113.61648 * 89.11092 * 26 7 6 28 28 C 1.53001 * 113.61651 * 220.01697 * 26 7 6 29 29 H 1.09001 * 109.47354 * 300.00128 * 1 2 3 30 30 H 1.09003 * 109.47099 * 60.00352 * 1 2 3 31 31 H 1.09001 * 109.47367 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47354 * 239.99872 * 2 1 3 33 33 H 1.09003 * 109.47099 * 119.99648 * 2 1 3 34 34 H 1.09006 * 113.61356 * 105.46768 * 6 4 3 35 35 H 1.08994 * 113.69319 * 334.57461 * 6 4 3 36 36 H 1.09000 * 109.47363 * 196.91884 * 8 7 6 37 37 H 1.08999 * 109.46835 * 316.92377 * 8 7 6 38 38 H 0.96702 * 113.99755 * 179.97438 * 9 8 7 39 39 H 0.96995 * 119.99712 * 3.15730 * 10 7 6 40 40 H 0.96995 * 119.99725 * 0.27602 * 13 11 10 41 41 H 1.09004 * 109.47280 * 299.99779 * 14 13 11 42 42 H 1.08999 * 109.47265 * 60.00044 * 14 13 11 43 43 H 0.97008 * 119.99693 * 359.97438 * 17 15 14 44 44 H 0.96994 * 120.00464 * 179.97438 * 21 20 18 45 45 H 1.09008 * 109.46811 * 60.00338 * 27 26 7 46 46 H 1.09003 * 109.47294 * 180.02562 * 27 26 7 47 47 H 1.08997 * 109.47359 * 300.00123 * 27 26 7 48 48 H 1.09000 * 109.46812 * 59.99471 * 28 26 7 49 49 H 1.08992 * 109.47392 * 179.97438 * 28 26 7 50 50 H 1.09005 * 109.46849 * 299.99660 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9277 0.5639 -0.3711 6 6 4.0072 1.9780 1.3289 7 6 4.9914 2.8077 0.4876 8 6 5.2363 4.2134 1.0401 9 8 6.1196 4.1375 2.1608 10 7 6.2326 2.0984 0.1672 11 6 7.2126 2.7278 -0.5109 12 8 7.0343 3.8546 -0.9311 13 7 8.3904 2.1079 -0.7233 14 6 9.4555 2.7918 -1.4609 15 6 10.6582 1.8891 -1.5589 16 8 10.6287 0.7834 -1.0610 17 7 11.7670 2.3106 -2.1987 18 6 12.8613 1.4896 -2.2873 19 1 12.8350 0.5051 -1.8441 20 6 14.0042 1.9241 -2.9475 21 7 14.0364 3.1222 -3.4863 22 14 15.4955 0.8056 -3.0676 23 1 15.2061 -0.4805 -2.3840 24 1 15.8065 0.5471 -4.4965 25 1 16.6593 1.4608 -2.4184 26 6 3.9461 2.7602 -0.6392 27 6 2.9377 3.9097 -0.5886 28 6 4.5524 2.5606 -2.0297 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.4886 1.2043 1.9271 35 1 3.3065 2.5831 1.9040 36 1 5.6848 4.8353 0.2655 37 1 4.2883 4.6507 1.3537 38 1 6.3199 4.9941 2.5625 39 1 6.3489 1.1758 0.4430 40 1 8.5312 1.2074 -0.3916 41 1 9.1033 3.0384 -2.4625 42 1 9.7305 3.7071 -0.9368 43 1 11.7907 3.1951 -2.5965 44 1 14.8343 3.4256 -3.9468 45 1 3.4652 4.8598 -0.6742 46 1 2.2316 3.8101 -1.4131 47 1 2.3976 3.8778 0.3576 48 1 5.1012 1.6191 -2.0550 49 1 3.7560 2.5367 -2.7733 50 1 5.2322 3.3835 -2.2511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358303532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:27 Heat of formation + Delta-G solvation = -165.322576 kcal Electronic energy + Delta-G solvation = -31372.489383 eV Core-core repulsion = 27013.787715 eV Total energy + Delta-G solvation = -4358.701668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31103 -40.65902 -39.74609 -38.10314 -36.96062 -36.20881 -35.19373 -34.34143 -33.35272 -32.01704 -31.36773 -29.24262 -29.02430 -27.61024 -26.30802 -23.97860 -23.42540 -23.24171 -21.93783 -21.35066 -20.13178 -19.57010 -19.42935 -18.25574 -17.74206 -17.38009 -17.08544 -16.86916 -16.54838 -16.42857 -16.24880 -16.00810 -15.72867 -15.59335 -15.20666 -14.93391 -14.59749 -14.36360 -14.20091 -13.93426 -13.82871 -13.58136 -13.54770 -13.33746 -13.18095 -12.97657 -12.91209 -12.89792 -12.75978 -12.44413 -12.26647 -12.11496 -12.00043 -11.91462 -11.68174 -11.57724 -11.44826 -11.24646 -10.55111 -10.49687 -10.27084 -10.18728 -10.08720 -9.72147 -8.50873 -6.00921 1.35112 1.42344 1.54781 1.61520 1.90670 2.20535 2.28616 2.70330 3.02887 3.13889 3.16510 3.30891 3.32929 3.58493 3.83524 3.94230 4.20667 4.21678 4.24542 4.33414 4.36032 4.42310 4.46275 4.48812 4.50393 4.54582 4.62587 4.76408 4.80156 4.86451 4.90444 4.92515 5.00961 5.07633 5.09882 5.11823 5.31065 5.34787 5.38276 5.43903 5.44999 5.67010 5.92540 5.98205 6.34262 6.48717 6.87904 7.04035 7.08254 7.44024 7.63425 7.95338 8.66309 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.002133 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.167549 B =13123.735963 C =13674.247037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.379 6.379 4 C 0.078 3.922 5 H 0.091 0.909 6 C -0.139 4.139 7 C 0.177 3.823 8 C 0.078 3.922 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.716 3.284 12 O -0.613 6.613 13 N -0.728 5.728 14 C 0.146 3.854 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.086 0.914 20 C -0.012 4.012 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.079 4.079 27 C -0.114 4.114 28 C -0.131 4.131 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.390 0.610 39 H 0.405 0.595 40 H 0.407 0.593 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.060 0.940 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.880 -0.721 8.176 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.298 6.298 4 C 0.020 3.980 5 H 0.109 0.891 6 C -0.177 4.177 7 C 0.089 3.911 8 C -0.001 4.001 9 O -0.390 6.390 10 N -0.363 5.363 11 C 0.416 3.584 12 O -0.494 6.494 13 N -0.385 5.385 14 C 0.018 3.982 15 C 0.221 3.779 16 O -0.513 6.513 17 N -0.195 5.195 18 C -0.465 4.465 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.081 4.081 27 C -0.172 4.172 28 C -0.188 4.188 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.239 0.761 39 H 0.241 0.759 40 H 0.244 0.756 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.029 -0.795 7.882 27.207 hybrid contribution 1.432 -0.340 -0.135 1.478 sum -24.596 -1.135 7.747 25.812 Atomic orbital electron populations 1.21743 0.92931 1.03140 1.02721 1.22683 0.96316 0.83357 1.00536 1.87922 1.20084 1.27249 1.94557 1.23762 0.81453 0.97182 0.95639 0.89073 1.23762 0.96809 0.99969 0.97137 1.20987 0.82326 0.92020 0.95730 1.22457 0.93388 0.95886 0.88332 1.86408 1.68837 1.36434 1.47369 1.44451 1.15478 1.16086 1.60309 1.15746 0.79882 0.84037 0.78737 1.90802 1.81770 1.19231 1.57608 1.44713 1.12715 1.20428 1.60653 1.20518 0.85353 0.94241 0.98135 1.20459 0.85476 0.88579 0.83405 1.90467 1.83820 1.23695 1.53271 1.41841 1.11821 1.17446 1.48441 1.19764 0.92025 0.99484 1.35230 0.89634 1.26132 1.01616 0.98068 0.95424 1.69681 1.31227 1.18630 1.36079 0.84809 0.76967 0.77862 0.78318 1.19464 1.19624 1.19646 1.22555 0.94665 0.96400 0.94477 1.21413 0.97140 0.95567 1.03070 1.21655 1.00214 1.01373 0.95574 0.92008 0.92418 0.89654 0.93236 0.92607 0.89646 0.87067 0.92803 0.90999 0.76090 0.75877 0.75639 0.89131 0.89348 0.76717 0.91086 0.92499 0.91834 0.91080 0.93522 0.92146 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.61 6.51 71.98 0.47 1.08 16 3 O -0.38 -6.45 9.44 -148.98 -1.41 -7.85 16 4 C 0.08 1.31 3.61 31.12 0.11 1.42 16 5 H 0.09 1.46 7.72 -2.38 -0.02 1.45 16 6 C -0.14 -2.27 6.81 31.12 0.21 -2.05 16 7 C 0.18 3.74 0.79 4.13 0.00 3.75 16 8 C 0.08 1.73 4.76 71.98 0.34 2.08 16 9 O -0.58 -13.63 13.52 -148.98 -2.01 -15.65 16 10 N -0.71 -17.10 4.34 -435.62 -1.89 -19.00 16 11 C 0.72 22.50 7.32 179.05 1.31 23.81 16 12 O -0.61 -22.08 12.31 -3.98 -0.05 -22.13 16 13 N -0.73 -24.44 5.53 -482.30 -2.67 -27.10 16 14 C 0.15 5.44 6.15 85.63 0.53 5.97 16 15 C 0.43 20.23 7.85 87.66 0.69 20.92 16 16 O -0.62 -32.56 15.24 -3.07 -0.05 -32.61 16 17 N -0.56 -28.35 5.29 -306.98 -1.62 -29.97 16 18 C -0.34 -18.61 9.68 84.04 0.81 -17.79 16 19 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 20 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 21 N -0.92 -48.87 13.05 21.66 0.28 -48.58 16 22 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 C -0.08 -1.57 1.27 -51.66 -0.07 -1.63 16 27 C -0.11 -2.02 7.19 71.98 0.52 -1.50 16 28 C -0.13 -3.07 7.87 71.98 0.57 -2.50 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.08 1.27 8.13 -2.38 -0.02 1.25 16 35 H 0.11 1.68 7.56 -2.39 -0.02 1.66 16 36 H 0.05 1.51 6.04 -2.39 -0.01 1.49 16 37 H 0.07 1.24 6.91 -2.39 -0.02 1.23 16 38 H 0.39 6.15 9.12 -74.06 -0.68 5.48 16 39 H 0.41 8.19 8.66 -92.71 -0.80 7.38 16 40 H 0.41 13.54 7.46 -92.71 -0.69 12.85 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.40 19.41 7.90 -92.70 -0.73 18.68 16 44 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.06 1.03 7.33 -2.38 -0.02 1.01 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.11 7.07 -2.39 -0.02 1.09 16 48 H 0.05 1.11 7.52 -2.39 -0.02 1.10 16 49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.05 1.50 6.44 -2.38 -0.02 1.48 16 Total: -1.00 -68.86 401.80 -2.59 -71.45 By element: Atomic # 1 Polarization: 56.74 SS G_CDS: -1.90 Total: 54.84 kcal Atomic # 6 Polarization: 25.90 SS G_CDS: 6.70 Total: 32.60 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.90 Total: -124.65 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -3.52 Total: -78.23 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -68.86 -2.59 -71.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358303532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.872 kcal (2) G-P(sol) polarization free energy of solvation -68.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds