Wall clock time and date at job start Wed Apr 1 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.46973 * 2 1 4 4 C 1.42901 * 113.99896 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.85189 * 341.19828 * 4 3 2 6 6 C 1.53784 * 113.69188 * 112.46289 * 4 3 2 7 7 C 1.53779 * 87.08073 * 139.99286 * 6 4 3 8 8 O 1.42905 * 113.69151 * 220.00734 * 7 6 4 9 9 C 1.53002 * 113.61519 * 89.11850 * 7 6 4 10 10 N 1.46506 * 109.47035 * 82.49862 * 9 7 6 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99797 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99769 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46707 * 180.02562 * 14 13 11 16 16 O 1.21285 * 120.00416 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99790 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00294 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99734 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00276 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00011 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00043 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47476 * 59.99965 * 22 20 18 24 24 H 1.48504 * 109.47356 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47017 * 299.99742 * 22 20 18 26 26 C 1.53777 * 87.08310 * 334.56793 * 7 6 4 27 27 C 1.53005 * 113.61495 * 139.97966 * 26 7 6 28 28 C 1.53004 * 113.61546 * 270.88282 * 26 7 6 29 29 H 1.08996 * 109.47434 * 300.00208 * 1 2 3 30 30 H 1.09002 * 109.47030 * 60.00545 * 1 2 3 31 31 H 1.08995 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47434 * 239.99792 * 2 1 3 33 33 H 1.09001 * 109.46835 * 119.99969 * 2 1 3 34 34 H 1.08995 * 113.61074 * 25.44448 * 6 4 3 35 35 H 1.09002 * 113.61372 * 254.54035 * 6 4 3 36 36 H 0.96704 * 113.99922 * 279.07038 * 8 7 6 37 37 H 1.09004 * 109.46930 * 322.50092 * 9 7 6 38 38 H 1.09000 * 109.47312 * 202.50036 * 9 7 6 39 39 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 40 40 H 0.96999 * 120.00050 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.46398 * 299.99705 * 14 13 11 42 42 H 1.08992 * 109.47350 * 59.99653 * 14 13 11 43 43 H 0.97003 * 119.99677 * 0.02562 * 17 15 14 44 44 H 0.97005 * 120.00362 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.46543 * 60.00042 * 27 26 7 46 46 H 1.08993 * 109.47146 * 180.02562 * 27 26 7 47 47 H 1.08994 * 109.47049 * 300.00473 * 27 26 7 48 48 H 1.08997 * 109.46834 * 59.99939 * 28 26 7 49 49 H 1.08994 * 109.46979 * 179.97438 * 28 26 7 50 50 H 1.09000 * 109.46913 * 300.00362 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9278 0.5456 0.3247 6 6 4.0049 2.0451 -1.3006 7 6 4.9914 2.8300 -0.4200 8 8 5.2198 4.1683 -0.8661 9 6 6.2877 2.0722 -0.1264 10 7 7.2123 2.2320 -1.2516 11 6 8.4263 1.6478 -1.2144 12 8 8.7539 0.9877 -0.2473 13 7 9.2771 1.7953 -2.2492 14 6 10.5965 1.1597 -2.2090 15 6 11.3460 1.4777 -3.4772 16 8 10.8288 2.1669 -4.3307 17 7 12.5911 0.9962 -3.6628 18 6 13.2728 1.2850 -4.8167 19 1 12.8122 1.8987 -5.5767 20 6 14.5561 0.7882 -5.0083 21 7 15.1167 0.0418 -4.0833 22 14 15.4852 1.1823 -6.5802 23 1 15.6479 2.6532 -6.7036 24 1 16.8229 0.5386 -6.5393 25 1 14.7238 0.6689 -7.7472 26 6 3.9483 2.7253 0.7051 27 6 4.5574 2.4543 2.0823 28 6 2.9406 3.8765 0.7157 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3024 2.6792 -1.8414 35 1 4.4845 1.3028 -1.9388 36 1 5.8576 4.2382 -1.5896 37 1 6.0662 1.0142 0.0143 38 1 6.7448 2.4713 0.7790 39 1 6.9511 2.7590 -2.0229 40 1 9.0155 2.3216 -3.0209 41 1 11.1554 1.5370 -1.3527 42 1 10.4772 0.0802 -2.1180 43 1 13.0045 0.4447 -2.9803 44 1 16.0128 -0.3048 -4.2169 45 1 5.2382 3.2642 2.3442 46 1 3.7624 2.3927 2.8254 47 1 5.1055 1.5125 2.0581 48 1 2.3986 3.8936 -0.2298 49 1 2.2362 3.7352 1.5354 50 1 3.4689 4.8206 0.8487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358312539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:03 Heat of formation + Delta-G solvation = -144.040455 kcal Electronic energy + Delta-G solvation = -30304.156204 eV Core-core repulsion = 25946.377398 eV Total energy + Delta-G solvation = -4357.778805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31638 -39.75566 -38.25288 -37.65781 -35.41217 -34.53046 -34.25316 -33.68228 -31.51983 -31.40153 -30.76479 -28.81215 -27.58390 -26.31702 -24.43506 -23.53718 -22.97943 -22.63179 -20.85903 -19.62758 -18.93214 -18.71953 -18.10549 -17.36157 -16.55394 -16.39132 -15.86924 -15.78261 -15.62137 -15.40102 -14.94439 -14.62504 -14.53562 -14.37894 -14.16742 -13.89898 -13.77784 -13.49020 -13.38790 -13.03558 -12.81112 -12.74125 -12.58355 -12.32453 -12.25356 -12.21162 -11.92277 -11.80227 -11.64524 -11.61611 -11.24315 -11.11911 -10.93342 -10.71780 -10.52169 -10.33680 -10.14906 -10.08547 -9.69219 -9.64442 -9.30217 -8.69558 -8.65287 -8.11922 -6.52941 -3.95171 2.62706 3.12369 3.18681 3.20554 3.24299 3.30141 3.72734 3.76934 3.95399 4.04033 4.12134 4.17185 4.29114 4.47883 4.63078 4.68317 4.84692 4.86863 4.89001 4.98726 5.02586 5.15574 5.19963 5.29525 5.36848 5.43111 5.44833 5.48060 5.51818 5.63048 5.66126 5.74018 5.75829 5.79212 5.87349 5.96826 6.01040 6.05318 6.18585 6.30728 6.67900 6.88931 6.92108 7.25574 7.44175 7.90215 8.11913 8.43111 8.68902 9.02778 9.37426 9.85218 10.63758 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.001728 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.322141 B =16197.064367 C =16389.593673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.071 3.929 5 H 0.091 0.909 6 C -0.179 4.179 7 C 0.102 3.898 8 O -0.536 6.536 9 C 0.133 3.867 10 N -0.750 5.750 11 C 0.707 3.293 12 O -0.595 6.595 13 N -0.723 5.723 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.056 4.056 27 C -0.146 4.146 28 C -0.108 4.108 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.374 0.626 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.392 0.608 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.275 0.725 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.389 1.826 10.400 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.284 6.284 4 C 0.013 3.987 5 H 0.109 0.891 6 C -0.217 4.217 7 C 0.060 3.940 8 O -0.342 6.342 9 C 0.008 3.992 10 N -0.408 5.408 11 C 0.407 3.593 12 O -0.473 6.473 13 N -0.380 5.380 14 C 0.000 4.000 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.057 4.057 27 C -0.203 4.203 28 C -0.165 4.165 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.223 0.777 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.227 0.773 40 H 0.244 0.756 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.744 1.853 11.194 28.134 hybrid contribution 1.218 -0.188 -1.567 1.994 sum -24.526 1.664 9.628 26.401 Atomic orbital electron populations 1.21737 0.93734 1.02247 1.03096 1.22536 0.95627 0.83991 1.00135 1.87944 1.19881 1.26102 1.94510 1.23595 0.81695 0.97289 0.96110 0.89096 1.24205 0.99116 1.00500 0.97854 1.22620 0.92209 0.82825 0.96350 1.86588 1.66036 1.25252 1.56306 1.21551 0.87523 1.00397 0.89691 1.44919 1.15743 1.57681 1.22447 1.15777 0.80083 0.80195 0.83294 1.90919 1.76910 1.45436 1.34048 1.44763 1.15907 1.56420 1.20893 1.20798 0.82793 0.98345 0.98064 1.19744 0.83841 0.86239 0.88842 1.90487 1.68681 1.43460 1.45898 1.41779 1.12461 1.44823 1.19213 1.19678 0.96966 1.30645 0.96285 0.87728 1.25324 0.96971 0.96182 0.99195 1.69605 1.16220 1.33540 1.34043 0.85867 0.78205 0.78829 0.81021 1.19779 1.20845 1.19794 1.22229 0.94012 0.95778 0.93641 1.21866 1.01045 1.02199 0.95172 1.21223 0.96942 0.96091 1.02283 0.91868 0.91870 0.91154 0.93344 0.93309 0.88016 0.90555 0.77720 0.90585 0.90128 0.77337 0.75567 0.89950 0.89989 0.77006 0.91517 0.91508 0.91803 0.92010 0.92024 0.92425 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.37 6.50 37.16 0.24 0.61 16 3 O -0.37 -3.21 9.45 -35.23 -0.33 -3.55 16 4 C 0.07 0.58 3.37 -25.92 -0.09 0.49 16 5 H 0.09 0.67 7.20 -51.93 -0.37 0.30 16 6 C -0.18 -1.46 6.96 -25.92 -0.18 -1.64 16 7 C 0.10 0.87 1.41 -89.81 -0.13 0.74 16 8 O -0.54 -4.81 12.49 -35.23 -0.44 -5.25 16 9 C 0.13 1.33 4.01 -4.04 -0.02 1.31 16 10 N -0.75 -8.21 5.35 -65.22 -0.35 -8.56 16 11 C 0.71 10.92 8.57 -86.92 -0.74 10.17 16 12 O -0.59 -11.22 16.34 5.28 0.09 -11.14 16 13 N -0.72 -11.63 5.53 -66.41 -0.37 -12.00 16 14 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 15 C 0.43 9.65 7.85 -10.98 -0.09 9.56 16 16 O -0.60 -15.01 15.24 5.55 0.08 -14.93 16 17 N -0.55 -13.43 5.29 -10.97 -0.06 -13.49 16 18 C -0.31 -8.25 9.68 -14.94 -0.14 -8.39 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.67 13.05 55.50 0.72 -22.95 16 22 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 26 C -0.06 -0.47 1.30 -153.69 -0.20 -0.67 16 27 C -0.15 -1.12 8.00 37.16 0.30 -0.82 16 28 C -0.11 -0.94 7.92 37.16 0.29 -0.65 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 35 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.37 2.44 7.33 45.56 0.33 2.77 16 37 H 0.08 0.78 7.26 -51.93 -0.38 0.40 16 38 H 0.08 0.89 7.34 -51.93 -0.38 0.51 16 39 H 0.39 3.28 7.05 -40.82 -0.29 2.99 16 40 H 0.41 6.30 7.45 -40.82 -0.30 5.99 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.46 7.14 -51.93 -0.37 0.08 16 48 H 0.06 0.58 7.18 -51.93 -0.37 0.20 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -32.44 407.35 -7.45 -39.89 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -7.41 Total: 17.34 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -0.50 Total: 13.14 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.05 Total: -57.00 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.60 Total: -34.86 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.44 -7.45 -39.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358312539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.151 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds