Wall clock time and date at job start Wed Apr 1 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46698 * 2 1 4 4 C 1.42898 * 113.99967 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.85316 * 21.69058 * 4 3 2 6 6 C 1.53787 * 113.61591 * 250.49616 * 4 3 2 7 7 C 1.53780 * 87.07889 * 219.93089 * 6 4 3 8 8 O 1.42903 * 113.60917 * 140.06397 * 7 6 4 9 9 C 1.52993 * 113.61747 * 270.87885 * 7 6 4 10 10 N 1.46496 * 109.47551 * 285.50197 * 9 7 6 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99978 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99635 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47011 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99820 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99914 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99647 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00062 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99676 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00283 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99770 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47017 * 60.00263 * 22 20 18 24 24 H 1.48498 * 109.47024 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47114 * 300.00455 * 22 20 18 26 26 C 1.53777 * 87.08466 * 25.43338 * 7 6 4 27 27 C 1.52997 * 113.61922 * 89.11072 * 26 7 6 28 28 C 1.52995 * 113.61426 * 220.01955 * 26 7 6 29 29 H 1.09002 * 109.46765 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47111 * 299.99476 * 1 2 3 31 31 H 1.08997 * 109.47560 * 59.99607 * 1 2 3 32 32 H 1.08995 * 109.46898 * 240.00622 * 2 1 3 33 33 H 1.08997 * 109.47187 * 120.00001 * 2 1 3 34 34 H 1.08995 * 113.61264 * 105.38290 * 6 4 3 35 35 H 1.08999 * 113.61294 * 334.48079 * 6 4 3 36 36 H 0.96699 * 114.00083 * 80.86548 * 8 7 6 37 37 H 1.09000 * 109.47250 * 165.49975 * 9 7 6 38 38 H 1.09004 * 109.46862 * 45.49999 * 9 7 6 39 39 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 40 40 H 0.96995 * 120.00015 * 359.72369 * 13 11 10 41 41 H 1.09005 * 109.47306 * 299.99972 * 14 13 11 42 42 H 1.09002 * 109.47518 * 60.00210 * 14 13 11 43 43 H 0.97000 * 120.00556 * 359.97438 * 17 15 14 44 44 H 0.96998 * 119.99972 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47102 * 59.99996 * 27 26 7 46 46 H 1.08995 * 109.47621 * 180.02562 * 27 26 7 47 47 H 1.09006 * 109.47314 * 300.00779 * 27 26 7 48 48 H 1.09004 * 109.47574 * 59.99556 * 28 26 7 49 49 H 1.09005 * 109.47248 * 179.97438 * 28 26 7 50 50 H 1.08999 * 109.46872 * 299.99423 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9264 0.5633 -0.3722 6 6 4.0083 1.9777 1.3275 7 6 4.9932 2.8060 0.4857 8 8 5.2236 4.1187 1.0013 9 6 6.2883 2.0636 0.1507 10 7 7.1375 2.0006 1.3428 11 6 8.3371 1.3891 1.2841 12 8 8.7143 0.8892 0.2420 13 7 9.1186 1.3317 2.3808 14 6 10.4222 0.6664 2.3171 15 6 11.0903 0.7404 3.6660 16 8 10.5321 1.2939 4.5897 17 7 12.3080 0.1915 3.8459 18 6 12.9159 0.2592 5.0729 19 1 12.4192 0.7528 5.8952 20 6 14.1712 -0.3072 5.2585 21 7 14.7757 -0.9073 4.2579 22 14 14.9998 -0.2143 6.9300 23 1 14.1485 -0.8889 7.9427 24 1 16.3215 -0.8882 6.8655 25 1 15.1883 1.2087 7.3107 26 6 3.9475 2.7595 -0.6408 27 6 2.9404 3.9102 -0.5902 28 6 4.5531 2.5588 -2.0314 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.4889 1.2036 1.9257 35 1 3.3075 2.5838 1.9016 36 1 5.8625 4.1499 1.7265 37 1 6.8154 2.5925 -0.6433 38 1 6.0521 1.0524 -0.1808 39 1 6.8367 2.3998 2.1741 40 1 8.8194 1.7340 3.2111 41 1 10.2840 -0.3780 2.0373 42 1 11.0472 1.1620 1.5741 43 1 12.7543 -0.2515 3.1073 44 1 15.6521 -1.3023 4.3874 45 1 3.4690 4.8597 -0.6761 46 1 2.2340 3.8114 -1.4143 47 1 2.4006 3.8793 0.3563 48 1 5.1006 1.6167 -2.0568 49 1 3.7562 2.5357 -2.7749 50 1 5.2337 3.3808 -2.2533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358312543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:10 Heat of formation + Delta-G solvation = -145.301491 kcal Electronic energy + Delta-G solvation = -30335.986905 eV Core-core repulsion = 25978.153417 eV Total energy + Delta-G solvation = -4357.833488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31653 -39.75132 -38.24932 -37.64674 -35.37297 -34.54066 -34.28176 -33.68282 -31.50898 -31.40383 -30.73788 -28.81191 -27.58333 -26.31913 -24.43462 -23.56792 -22.96462 -22.61952 -20.83571 -19.62805 -18.93317 -18.68232 -18.10159 -17.35351 -16.54422 -16.38569 -15.87083 -15.80096 -15.61840 -15.40203 -14.93858 -14.60083 -14.56555 -14.40026 -14.16121 -13.89797 -13.78753 -13.49232 -13.35208 -13.03273 -12.81519 -12.74936 -12.57085 -12.32904 -12.24809 -12.21280 -11.92070 -11.80818 -11.64707 -11.60366 -11.24016 -11.12081 -10.91462 -10.72035 -10.52387 -10.33882 -10.15096 -10.07501 -9.69676 -9.64590 -9.30242 -8.69579 -8.65460 -8.12148 -6.53161 -3.95401 2.63300 3.12178 3.18673 3.20368 3.24112 3.30215 3.72563 3.78211 3.95698 4.04254 4.11980 4.17543 4.29581 4.47744 4.64191 4.69104 4.84519 4.86691 4.89306 4.99492 5.02798 5.15336 5.19608 5.29869 5.36530 5.43347 5.45045 5.48930 5.52598 5.62972 5.66752 5.74555 5.76281 5.79346 5.87206 5.96630 6.01606 6.05144 6.18643 6.31508 6.67932 6.89371 6.93131 7.26482 7.43981 7.90052 8.12190 8.42865 8.69024 9.02555 9.37224 9.84982 10.63550 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.001763 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.327136 B =15873.952330 C =16188.081468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.072 3.928 5 H 0.091 0.909 6 C -0.181 4.181 7 C 0.102 3.898 8 O -0.537 6.537 9 C 0.133 3.867 10 N -0.750 5.750 11 C 0.707 3.293 12 O -0.595 6.595 13 N -0.723 5.723 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.599 6.599 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.054 4.054 27 C -0.108 4.108 28 C -0.146 4.146 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.376 0.624 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.394 0.606 40 H 0.407 0.593 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.396 0.604 44 H 0.275 0.725 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.539 4.233 -10.843 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.285 6.285 4 C 0.013 3.987 5 H 0.109 0.891 6 C -0.219 4.219 7 C 0.060 3.940 8 O -0.343 6.343 9 C 0.009 3.991 10 N -0.408 5.408 11 C 0.406 3.594 12 O -0.473 6.473 13 N -0.380 5.380 14 C 0.000 4.000 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.055 4.055 27 C -0.166 4.166 28 C -0.203 4.203 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.224 0.776 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.244 0.756 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.879 4.329 -11.656 27.813 hybrid contribution 1.158 -0.417 1.619 2.034 sum -23.721 3.912 -10.037 26.052 Atomic orbital electron populations 1.21738 0.93730 1.02250 1.03087 1.22531 0.95617 0.83980 1.00150 1.87940 1.19878 1.26109 1.94536 1.23590 0.81690 0.97275 0.96114 0.89146 1.24213 0.99168 1.00489 0.97986 1.22608 0.92178 0.83319 0.95887 1.86571 1.65997 1.26744 1.54969 1.21536 0.88973 1.00802 0.87817 1.44932 1.18743 1.63120 1.14018 1.15784 0.80131 0.79372 0.84095 1.90915 1.74040 1.52622 1.29732 1.44764 1.19111 1.61332 1.12794 1.20798 0.83572 0.98301 0.97333 1.19747 0.83922 0.85662 0.89336 1.90490 1.65340 1.49450 1.43266 1.41781 1.14818 1.48653 1.13024 1.19681 0.99942 1.34983 0.88964 0.87727 1.25328 0.96687 0.96190 0.99479 1.69604 1.16088 1.36232 1.31481 0.85867 0.78092 0.78702 0.81262 1.19788 1.20843 1.19778 1.22191 0.93947 0.95665 0.93660 1.21226 0.96952 0.96103 1.02273 1.21868 1.01069 1.02385 0.94975 0.91150 0.91869 0.91875 0.93318 0.93333 0.90559 0.88013 0.77614 0.90174 0.90549 0.77258 0.75574 0.89991 0.89959 0.77002 0.91513 0.91865 0.92411 0.92019 0.92003 0.91794 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.38 6.51 37.16 0.24 0.62 16 3 O -0.37 -3.25 9.45 -35.23 -0.33 -3.58 16 4 C 0.07 0.59 3.35 -25.91 -0.09 0.50 16 5 H 0.09 0.69 7.17 -51.93 -0.37 0.32 16 6 C -0.18 -1.47 6.98 -25.92 -0.18 -1.65 16 7 C 0.10 0.86 1.30 -89.81 -0.12 0.75 16 8 O -0.54 -4.78 12.50 -35.23 -0.44 -5.22 16 9 C 0.13 1.33 3.92 -4.05 -0.02 1.31 16 10 N -0.75 -8.16 5.33 -65.23 -0.35 -8.51 16 11 C 0.71 10.88 8.57 -86.91 -0.74 10.13 16 12 O -0.59 -11.21 16.34 5.30 0.09 -11.12 16 13 N -0.72 -11.62 5.53 -66.41 -0.37 -11.99 16 14 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 15 C 0.43 9.64 7.85 -10.98 -0.09 9.56 16 16 O -0.60 -15.02 15.24 5.55 0.08 -14.93 16 17 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 18 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.67 13.05 55.50 0.72 -22.95 16 22 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.05 -0.45 1.30 -153.70 -0.20 -0.65 16 27 C -0.11 -0.94 7.92 37.16 0.29 -0.65 16 28 C -0.15 -1.12 8.15 37.16 0.30 -0.81 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 36 H 0.38 2.43 7.81 45.56 0.36 2.79 16 37 H 0.08 0.89 7.78 -51.93 -0.40 0.48 16 38 H 0.08 0.78 6.87 -51.93 -0.36 0.43 16 39 H 0.39 3.29 7.51 -40.82 -0.31 2.98 16 40 H 0.41 6.30 7.45 -40.82 -0.30 5.99 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.58 7.19 -51.93 -0.37 0.20 16 48 H 0.06 0.46 6.94 -51.93 -0.36 0.10 16 49 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 408.16 15.07 6.15 6.15 Total: -1.00 -32.37 408.16 -7.41 -39.78 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -7.41 Total: 17.40 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: -0.48 Total: 13.11 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.05 Total: -56.93 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.60 Total: -34.86 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.37 -7.41 -39.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358312543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.520 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds