Wall clock time and date at job start Wed Apr 1 2020 02:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46698 * 2 1 4 4 C 1.42898 * 113.99967 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.85316 * 21.69058 * 4 3 2 6 6 C 1.53787 * 113.61591 * 250.49616 * 4 3 2 7 7 C 1.53780 * 87.07889 * 219.93089 * 6 4 3 8 8 O 1.42903 * 113.60917 * 140.06397 * 7 6 4 9 9 C 1.52993 * 113.61747 * 270.87885 * 7 6 4 10 10 N 1.46496 * 109.47551 * 285.50197 * 9 7 6 11 11 C 1.34777 * 120.00258 * 180.02562 * 10 9 7 12 12 O 1.21579 * 119.99978 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99908 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99635 * 179.97438 * 13 11 10 15 15 C 1.50707 * 109.47011 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99820 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99914 * 180.02562 * 15 14 13 18 18 C 1.37104 * 119.99647 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00062 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99676 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00283 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99770 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47017 * 60.00263 * 22 20 18 24 24 H 1.48498 * 109.47024 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47114 * 300.00455 * 22 20 18 26 26 C 1.53777 * 87.08466 * 25.43338 * 7 6 4 27 27 C 1.52997 * 113.61922 * 89.11072 * 26 7 6 28 28 C 1.52995 * 113.61426 * 220.01955 * 26 7 6 29 29 H 1.09002 * 109.46765 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47111 * 299.99476 * 1 2 3 31 31 H 1.08997 * 109.47560 * 59.99607 * 1 2 3 32 32 H 1.08995 * 109.46898 * 240.00622 * 2 1 3 33 33 H 1.08997 * 109.47187 * 120.00001 * 2 1 3 34 34 H 1.08995 * 113.61264 * 105.38290 * 6 4 3 35 35 H 1.08999 * 113.61294 * 334.48079 * 6 4 3 36 36 H 0.96699 * 114.00083 * 80.86548 * 8 7 6 37 37 H 1.09000 * 109.47250 * 165.49975 * 9 7 6 38 38 H 1.09004 * 109.46862 * 45.49999 * 9 7 6 39 39 H 0.96999 * 119.99694 * 359.97438 * 10 9 7 40 40 H 0.96995 * 120.00015 * 359.72369 * 13 11 10 41 41 H 1.09005 * 109.47306 * 299.99972 * 14 13 11 42 42 H 1.09002 * 109.47518 * 60.00210 * 14 13 11 43 43 H 0.97000 * 120.00556 * 359.97438 * 17 15 14 44 44 H 0.96998 * 119.99972 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47102 * 59.99996 * 27 26 7 46 46 H 1.08995 * 109.47621 * 180.02562 * 27 26 7 47 47 H 1.09006 * 109.47314 * 300.00779 * 27 26 7 48 48 H 1.09004 * 109.47574 * 59.99556 * 28 26 7 49 49 H 1.09005 * 109.47248 * 179.97438 * 28 26 7 50 50 H 1.08999 * 109.46872 * 299.99423 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9264 0.5633 -0.3722 6 6 4.0083 1.9777 1.3275 7 6 4.9932 2.8060 0.4857 8 8 5.2236 4.1187 1.0013 9 6 6.2883 2.0636 0.1507 10 7 7.1375 2.0006 1.3428 11 6 8.3371 1.3891 1.2841 12 8 8.7143 0.8892 0.2420 13 7 9.1186 1.3317 2.3808 14 6 10.4222 0.6664 2.3171 15 6 11.0903 0.7404 3.6660 16 8 10.5321 1.2939 4.5897 17 7 12.3080 0.1915 3.8459 18 6 12.9159 0.2592 5.0729 19 1 12.4192 0.7528 5.8952 20 6 14.1712 -0.3072 5.2585 21 7 14.7757 -0.9073 4.2579 22 14 14.9998 -0.2143 6.9300 23 1 14.1485 -0.8889 7.9427 24 1 16.3215 -0.8882 6.8655 25 1 15.1883 1.2087 7.3107 26 6 3.9475 2.7595 -0.6408 27 6 2.9404 3.9102 -0.5902 28 6 4.5531 2.5588 -2.0314 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 4.4889 1.2036 1.9257 35 1 3.3075 2.5838 1.9016 36 1 5.8625 4.1499 1.7265 37 1 6.8154 2.5925 -0.6433 38 1 6.0521 1.0524 -0.1808 39 1 6.8367 2.3998 2.1741 40 1 8.8194 1.7340 3.2111 41 1 10.2840 -0.3780 2.0373 42 1 11.0472 1.1620 1.5741 43 1 12.7543 -0.2515 3.1073 44 1 15.6521 -1.3023 4.3874 45 1 3.4690 4.8597 -0.6761 46 1 2.2340 3.8114 -1.4143 47 1 2.4006 3.8793 0.3563 48 1 5.1006 1.6167 -2.0568 49 1 3.7562 2.5357 -2.7749 50 1 5.2337 3.3808 -2.2533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358312543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:09 Heat of formation + Delta-G solvation = -171.571979 kcal Electronic energy + Delta-G solvation = -30337.126079 eV Core-core repulsion = 25978.153417 eV Total energy + Delta-G solvation = -4358.972662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06438 -41.02039 -39.97086 -38.33647 -36.25903 -36.07109 -35.35086 -35.27669 -33.36165 -32.04534 -31.42415 -29.88921 -28.67302 -27.36588 -26.15625 -24.20792 -23.52749 -23.38169 -22.01213 -21.36076 -20.17662 -19.89887 -19.43453 -18.25383 -17.49939 -17.45583 -17.04002 -16.94558 -16.57991 -16.47700 -16.23083 -16.00911 -15.88448 -15.55926 -15.13224 -15.03605 -14.90494 -14.66475 -14.09001 -13.94388 -13.77683 -13.63699 -13.52900 -13.34228 -13.31286 -13.18460 -12.97566 -12.89670 -12.83084 -12.46245 -12.45908 -12.16557 -12.13476 -11.83237 -11.62593 -11.55276 -11.52042 -11.31499 -10.78239 -10.54699 -10.47586 -10.31366 -10.09748 -9.88303 -8.50073 -6.00290 1.38774 1.42336 1.48895 1.56070 1.90759 2.08008 2.28866 2.59905 2.97821 3.14738 3.17243 3.26748 3.27355 3.42077 3.55754 3.72809 4.02017 4.18113 4.21431 4.23031 4.31054 4.37178 4.44105 4.46851 4.50850 4.52289 4.62638 4.66244 4.80960 4.81950 4.87634 4.95554 5.03410 5.05492 5.09284 5.12857 5.27279 5.29005 5.30653 5.39191 5.42772 5.49585 5.84805 5.93295 6.31068 6.48868 6.67188 6.96755 7.04309 7.42336 7.49649 7.95409 8.66454 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.001763 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.327136 B =15873.952330 C =16188.081468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.380 6.380 4 C 0.072 3.928 5 H 0.098 0.902 6 C -0.175 4.175 7 C 0.110 3.890 8 O -0.547 6.547 9 C 0.137 3.863 10 N -0.731 5.731 11 C 0.708 3.292 12 O -0.628 6.628 13 N -0.722 5.722 14 C 0.142 3.858 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.058 4.058 27 C -0.103 4.103 28 C -0.145 4.145 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.386 0.614 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.408 0.592 40 H 0.411 0.589 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.180 4.089 -10.822 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.299 6.299 4 C 0.014 3.986 5 H 0.116 0.884 6 C -0.213 4.213 7 C 0.068 3.932 8 O -0.354 6.354 9 C 0.012 3.988 10 N -0.388 5.388 11 C 0.407 3.593 12 O -0.509 6.509 13 N -0.380 5.380 14 C 0.013 3.987 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.195 5.195 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.058 4.058 27 C -0.160 4.160 28 C -0.202 4.202 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.245 0.755 40 H 0.249 0.751 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.560 4.206 -11.631 28.395 hybrid contribution 1.262 -0.339 1.573 2.045 sum -24.298 3.867 -10.058 26.580 Atomic orbital electron populations 1.21746 0.92950 1.03185 1.02697 1.22694 0.96329 0.83266 1.00628 1.87926 1.20089 1.27310 1.94592 1.23620 0.81697 0.97377 0.95950 0.88446 1.24155 0.98855 1.00327 0.97982 1.22478 0.91405 0.83080 0.96218 1.86562 1.66468 1.26883 1.55512 1.21577 0.89152 1.00990 0.87050 1.44755 1.17259 1.61711 1.15120 1.15846 0.80889 0.79334 0.83187 1.90897 1.75031 1.54196 1.30812 1.44660 1.18564 1.61445 1.13294 1.20589 0.84358 0.99355 0.94397 1.20421 0.83135 0.83834 0.90562 1.90468 1.65825 1.50105 1.44795 1.41831 1.15580 1.49475 1.12581 1.19703 1.00975 1.36423 0.89608 0.89517 1.26121 0.96720 0.95359 1.02930 1.69672 1.16454 1.36413 1.33001 0.84932 0.77324 0.78725 0.77028 1.19498 1.19709 1.19531 1.22239 0.93818 0.95762 0.94027 1.21155 0.96925 0.95946 1.01958 1.21859 1.01218 1.02340 0.94747 0.89578 0.92396 0.92094 0.92561 0.93111 0.90251 0.88451 0.76453 0.91041 0.90439 0.75542 0.75120 0.88976 0.89029 0.76695 0.91090 0.92455 0.92017 0.92840 0.91763 0.91090 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.60 6.51 71.98 0.47 1.06 16 3 O -0.38 -6.32 9.45 -148.98 -1.41 -7.73 16 4 C 0.07 1.08 3.35 31.12 0.10 1.19 16 5 H 0.10 1.33 7.17 -2.38 -0.02 1.31 16 6 C -0.18 -2.62 6.98 31.12 0.22 -2.40 16 7 C 0.11 1.72 1.30 -10.27 -0.01 1.70 16 8 O -0.55 -9.01 12.50 -148.98 -1.86 -10.87 16 9 C 0.14 2.53 3.92 86.38 0.34 2.86 16 10 N -0.73 -14.73 5.33 -478.55 -2.55 -17.28 16 11 C 0.71 20.82 8.57 179.05 1.53 22.35 16 12 O -0.63 -22.97 16.34 -3.96 -0.06 -23.04 16 13 N -0.72 -22.33 5.53 -482.29 -2.67 -25.00 16 14 C 0.14 5.02 6.15 85.64 0.53 5.54 16 15 C 0.43 19.48 7.85 87.66 0.69 20.17 16 16 O -0.62 -31.29 15.24 -3.07 -0.05 -31.33 16 17 N -0.56 -27.59 5.29 -306.97 -1.62 -29.21 16 18 C -0.34 -18.35 9.68 84.04 0.81 -17.53 16 19 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 20 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.16 13.05 21.66 0.28 -47.87 16 22 Si 1.00 41.27 29.55 68.60 2.03 43.30 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 C -0.06 -0.90 1.30 -51.66 -0.07 -0.96 16 27 C -0.10 -1.70 7.92 71.98 0.57 -1.13 16 28 C -0.14 -2.05 8.15 71.98 0.59 -1.46 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.10 1.58 7.65 -2.39 -0.02 1.56 16 36 H 0.39 4.36 7.81 -74.06 -0.58 3.79 16 37 H 0.07 1.50 7.78 -2.39 -0.02 1.48 16 38 H 0.08 1.47 6.87 -2.38 -0.02 1.45 16 39 H 0.41 6.04 7.51 -92.71 -0.70 5.34 16 40 H 0.41 12.22 7.45 -92.71 -0.69 11.53 16 41 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 44 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.06 1.00 7.84 -2.39 -0.02 0.98 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.05 0.96 7.19 -2.38 -0.02 0.95 16 48 H 0.06 0.87 6.94 -2.38 -0.02 0.85 16 49 H 0.07 0.89 8.14 -2.38 -0.02 0.88 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -67.99 408.16 -2.64 -70.63 By element: Atomic # 1 Polarization: 49.57 SS G_CDS: -1.70 Total: 47.87 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 6.97 Total: 30.53 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -6.56 Total: -119.36 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -3.38 Total: -72.97 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -67.99 -2.64 -70.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358312543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.944 kcal (2) G-P(sol) polarization free energy of solvation -67.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds