Wall clock time and date at job start Wed Apr 1 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34637 * 116.99787 * 2 1 4 4 O 1.21503 * 120.00544 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99204 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00434 * 359.97438 * 5 3 2 7 7 C 1.46506 * 119.99417 * 179.97438 * 5 3 2 8 8 C 1.50695 * 109.46874 * 269.99852 * 7 5 3 9 9 O 1.21274 * 120.00413 * 0.27298 * 8 7 5 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99893 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.47293 * 90.00297 * 11 10 8 13 13 H 1.07997 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00247 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47226 * 89.99205 * 16 14 12 18 18 H 1.48494 * 109.47051 * 209.99874 * 16 14 12 19 19 H 1.48508 * 109.46947 * 329.99558 * 16 14 12 20 20 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 21 21 C 1.52999 * 109.47276 * 89.99654 * 20 10 8 22 22 N 1.46893 * 109.47361 * 180.02562 * 21 20 10 23 23 C 1.47013 * 110.99929 * 293.63619 * 22 21 20 24 24 C 1.53109 * 109.25866 * 177.60627 * 23 22 21 25 25 O 1.43011 * 109.25677 * 56.85034 * 24 23 22 26 26 C 1.43014 * 113.73945 * 301.32986 * 25 24 23 27 27 C 1.47012 * 111.00146 * 170.00252 * 22 21 20 28 28 H 1.08995 * 109.47303 * 59.99949 * 1 2 3 29 29 H 1.08994 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47042 * 300.00476 * 1 2 3 31 31 H 1.09004 * 109.47040 * 270.00253 * 6 5 3 32 32 H 1.09004 * 109.47514 * 30.00055 * 6 5 3 33 33 H 1.08998 * 109.47590 * 150.00114 * 6 5 3 34 34 H 1.09005 * 109.46943 * 149.99769 * 7 5 3 35 35 H 1.09002 * 109.47064 * 30.00032 * 7 5 3 36 36 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 37 37 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 38 38 H 0.96995 * 120.00744 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47416 * 209.99869 * 20 10 8 40 40 H 1.09008 * 109.47058 * 330.00468 * 20 10 8 41 41 H 1.08998 * 109.47074 * 300.00425 * 21 20 10 42 42 H 1.09007 * 109.46853 * 59.99785 * 21 20 10 43 43 H 1.08992 * 109.51039 * 297.54327 * 23 22 21 44 44 H 1.09006 * 109.50759 * 57.67723 * 23 22 21 45 45 H 1.08999 * 109.50103 * 296.91687 * 24 23 22 46 46 H 1.08994 * 109.53824 * 176.80489 * 24 23 22 47 47 H 1.08999 * 109.51245 * 298.73756 * 26 25 24 48 48 H 1.09006 * 109.54530 * 178.62599 * 26 25 24 49 49 H 1.09004 * 109.50986 * 302.32707 * 27 22 21 50 50 H 1.09010 * 109.50745 * 62.41541 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2070 0.0415 -0.0005 7 6 4.0744 2.5754 -0.0011 8 6 4.3019 3.0226 -1.4221 9 8 3.9393 2.3225 -2.3436 10 7 4.9039 4.2030 -1.6689 11 6 5.3374 5.0510 -0.5557 12 6 6.7517 4.6961 -0.1751 13 1 7.2751 3.9166 -0.7088 14 6 7.3771 5.3659 0.8550 15 7 6.7396 6.3148 1.5053 16 14 9.1300 4.9256 1.3273 17 1 10.0777 5.7569 0.5425 18 1 9.3310 5.1801 2.7764 19 1 9.3747 3.4896 1.0383 20 6 5.1256 4.6375 -3.0502 21 6 3.9177 5.4440 -3.5313 22 7 4.1397 5.8792 -4.9166 23 6 5.2483 6.8416 -4.9953 24 6 5.4838 7.2221 -6.4595 25 8 4.2727 7.7451 -7.0116 26 6 3.1722 6.8337 -6.9520 27 6 2.9132 6.4492 -5.4928 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.4053 -0.2630 1.0272 32 1 3.6584 -0.7482 -0.5140 33 1 5.1512 0.2212 -0.5147 34 1 5.0325 2.4952 0.5125 35 1 3.4465 3.3033 0.5128 36 1 5.2941 6.0973 -0.8578 37 1 4.6803 4.8922 0.2993 38 1 7.1796 6.7863 2.2297 39 1 6.0195 5.2595 -3.0965 40 1 5.2570 3.7642 -3.6892 41 1 3.0238 4.8221 -3.4851 42 1 3.7861 6.3173 -2.8924 43 1 4.9965 7.7345 -4.4232 44 1 6.1523 6.3897 -4.5868 45 1 5.7879 6.3385 -7.0207 46 1 6.2668 7.9780 -6.5183 47 1 3.4089 5.9389 -7.5276 48 1 2.2828 7.3084 -7.3667 49 1 2.1125 5.7110 -5.4475 50 1 2.6236 7.3356 -4.9282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490937275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:49 Heat of formation + Delta-G solvation = -138.957758 kcal Electronic energy + Delta-G solvation = -31652.578078 eV Core-core repulsion = 27295.019675 eV Total energy + Delta-G solvation = -4357.558403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40403 -39.61618 -38.97357 -36.66837 -36.00225 -35.19673 -34.78060 -32.67655 -31.23933 -30.27912 -28.56805 -27.58571 -27.30328 -26.16045 -25.18913 -24.01596 -23.04355 -22.14007 -20.63201 -20.26543 -18.54019 -17.84469 -16.99567 -16.91211 -16.60134 -16.46411 -16.14566 -15.98786 -15.52153 -15.10106 -14.99117 -14.74406 -14.49082 -14.44165 -14.07706 -13.90620 -13.65444 -13.34536 -13.06435 -12.69072 -12.57666 -12.39631 -12.27190 -12.18921 -12.02323 -11.94649 -11.59072 -11.49247 -11.39287 -11.24356 -11.00052 -10.84827 -10.68673 -10.66018 -10.41011 -10.33158 -10.18667 -9.87072 -9.68041 -9.49811 -8.68051 -8.40687 -8.33719 -7.80274 -6.26392 -4.35554 2.28705 3.02844 3.17064 3.24887 3.26096 3.31513 3.59600 3.82657 4.04638 4.21897 4.30217 4.86258 5.00499 5.03103 5.06469 5.13147 5.16201 5.24295 5.26230 5.28814 5.31632 5.46438 5.48526 5.54469 5.56002 5.61579 5.64047 5.67515 5.77827 5.83733 5.90353 5.95716 5.96457 5.97563 6.24996 6.34704 6.42315 6.47926 6.63863 7.00074 7.04452 7.09979 7.11364 7.44994 7.49357 7.67663 7.95267 8.22720 8.46613 8.70055 8.92579 9.33527 10.80035 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006391 B = 0.004252 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4379.871927 B = 6584.199166 C =10216.086720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.653 3.347 4 O -0.572 6.572 5 N -0.578 5.578 6 C 0.090 3.910 7 C 0.117 3.883 8 C 0.503 3.497 9 O -0.562 6.562 10 N -0.593 5.593 11 C 0.235 3.765 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.888 5.888 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.128 3.872 21 C 0.044 3.956 22 N -0.533 5.533 23 C 0.012 3.988 24 C 0.065 3.935 25 O -0.389 6.389 26 C 0.066 3.934 27 C 0.018 3.982 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.036 0.964 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 -5.866 -7.379 11.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.407 3.593 4 O -0.461 6.461 5 N -0.317 5.317 6 C -0.053 4.053 7 C -0.008 4.008 8 C 0.289 3.711 9 O -0.442 6.442 10 N -0.325 5.325 11 C 0.115 3.885 12 C -0.582 4.582 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.004 3.996 21 C -0.084 4.084 22 N -0.259 5.259 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.011 4.011 27 C -0.110 4.110 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.835 -6.033 -8.034 12.152 hybrid contribution 0.727 0.483 1.089 1.395 sum -6.108 -5.550 -6.945 10.786 Atomic orbital electron populations 1.23129 0.74997 1.03014 1.02621 1.86218 1.23709 1.31289 1.87277 1.17960 0.83226 0.81968 0.76167 1.90977 1.64288 1.34891 1.55918 1.46176 1.02110 1.07976 1.75403 1.21743 0.96334 0.85592 1.01637 1.21455 1.00151 0.83463 0.95692 1.20863 0.77455 0.81323 0.91427 1.90611 1.52362 1.55043 1.46212 1.48160 1.57269 1.19434 1.07591 1.19487 0.95308 0.90266 0.83401 1.21478 0.98521 1.20755 1.17416 0.91911 1.24952 0.98278 0.94646 0.95797 1.69920 1.37455 1.22911 1.22301 0.86512 0.84302 0.79012 0.77755 1.20498 1.21037 1.19695 1.21151 0.96287 0.99013 0.83122 1.22504 1.00308 0.98839 0.86780 1.62144 1.05385 1.38404 1.19949 1.22883 0.96172 0.95013 0.97556 1.22679 0.86810 0.99285 0.92440 1.87953 1.19464 1.41561 1.81792 1.22641 0.89804 0.93603 0.95099 1.22764 0.93164 0.98974 0.96127 0.92016 0.88289 0.92032 0.92425 0.90687 0.90658 0.85537 0.86812 0.94595 0.94340 0.92382 0.90451 0.90211 0.90598 0.94354 0.93746 0.88894 0.92286 0.88505 0.92315 0.88702 0.89726 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.56 101.05 1.07 1.70 16 2 O -0.37 -5.53 9.39 -40.32 -0.38 -5.91 16 3 C 0.65 11.82 8.39 54.06 0.45 12.27 16 4 O -0.57 -11.94 15.71 -19.27 -0.30 -12.25 16 5 N -0.58 -9.90 2.36 -188.80 -0.45 -10.34 16 6 C 0.09 1.19 10.44 59.84 0.62 1.82 16 7 C 0.12 2.17 4.44 -5.19 -0.02 2.15 16 8 C 0.50 10.41 7.74 -10.98 -0.09 10.32 16 9 O -0.56 -12.72 16.01 5.56 0.09 -12.63 16 10 N -0.59 -12.15 2.46 -175.06 -0.43 -12.58 16 11 C 0.24 5.33 4.96 -5.20 -0.03 5.30 16 12 C -0.54 -13.25 9.28 -34.44 -0.32 -13.57 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -23.54 13.29 55.43 0.74 -22.80 16 16 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 C 0.13 2.37 5.34 -4.04 -0.02 2.35 16 21 C 0.04 0.75 5.28 -3.83 -0.02 0.73 16 22 N -0.53 -7.87 4.73 -234.30 -1.11 -8.98 16 23 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 24 C 0.06 0.77 7.01 37.21 0.26 1.03 16 25 O -0.39 -5.12 10.83 -35.23 -0.38 -5.50 16 26 C 0.07 0.75 7.01 37.21 0.26 1.01 16 27 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.93 7.37 -51.93 -0.38 0.55 16 33 H 0.07 0.99 8.07 -51.93 -0.42 0.58 16 34 H 0.13 2.24 7.93 -51.93 -0.41 1.83 16 35 H 0.11 2.20 6.68 -51.93 -0.35 1.85 16 36 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.04 0.90 6.44 -51.93 -0.33 0.57 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.08 1.40 6.45 -51.93 -0.33 1.07 16 40 H 0.08 1.54 7.43 -51.92 -0.39 1.15 16 41 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 42 H 0.04 0.68 8.12 -51.92 -0.42 0.25 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 1.25 6.38 -51.93 -0.33 0.92 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 50 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -31.56 409.23 -7.44 -38.99 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.40 Total: 4.24 kcal Atomic # 6 Polarization: 25.01 SS G_CDS: 2.03 Total: 27.05 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -1.25 Total: -54.71 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.97 Total: -36.29 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.56 -7.44 -38.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490937275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.963 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds