Wall clock time and date at job start Wed Apr 1 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34637 * 116.99787 * 2 1 4 4 O 1.21503 * 120.00544 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99204 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00434 * 359.97438 * 5 3 2 7 7 C 1.46506 * 119.99417 * 179.97438 * 5 3 2 8 8 C 1.50695 * 109.46874 * 269.99852 * 7 5 3 9 9 O 1.21274 * 120.00413 * 0.27298 * 8 7 5 10 10 N 1.34784 * 119.99635 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99893 * 0.02562 * 10 8 7 12 12 C 1.50697 * 109.47293 * 90.00297 * 11 10 8 13 13 H 1.07997 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00247 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47226 * 89.99205 * 16 14 12 18 18 H 1.48494 * 109.47051 * 209.99874 * 16 14 12 19 19 H 1.48508 * 109.46947 * 329.99558 * 16 14 12 20 20 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 21 21 C 1.52999 * 109.47276 * 89.99654 * 20 10 8 22 22 N 1.46893 * 109.47361 * 180.02562 * 21 20 10 23 23 C 1.47013 * 110.99929 * 293.63619 * 22 21 20 24 24 C 1.53109 * 109.25866 * 177.60627 * 23 22 21 25 25 O 1.43011 * 109.25677 * 56.85034 * 24 23 22 26 26 C 1.43014 * 113.73945 * 301.32986 * 25 24 23 27 27 C 1.47012 * 111.00146 * 170.00252 * 22 21 20 28 28 H 1.08995 * 109.47303 * 59.99949 * 1 2 3 29 29 H 1.08994 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47042 * 300.00476 * 1 2 3 31 31 H 1.09004 * 109.47040 * 270.00253 * 6 5 3 32 32 H 1.09004 * 109.47514 * 30.00055 * 6 5 3 33 33 H 1.08998 * 109.47590 * 150.00114 * 6 5 3 34 34 H 1.09005 * 109.46943 * 149.99769 * 7 5 3 35 35 H 1.09002 * 109.47064 * 30.00032 * 7 5 3 36 36 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 37 37 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 38 38 H 0.96995 * 120.00744 * 180.02562 * 15 14 12 39 39 H 1.08998 * 109.47416 * 209.99869 * 20 10 8 40 40 H 1.09008 * 109.47058 * 330.00468 * 20 10 8 41 41 H 1.08998 * 109.47074 * 300.00425 * 21 20 10 42 42 H 1.09007 * 109.46853 * 59.99785 * 21 20 10 43 43 H 1.08992 * 109.51039 * 297.54327 * 23 22 21 44 44 H 1.09006 * 109.50759 * 57.67723 * 23 22 21 45 45 H 1.08999 * 109.50103 * 296.91687 * 24 23 22 46 46 H 1.08994 * 109.53824 * 176.80489 * 24 23 22 47 47 H 1.08999 * 109.51245 * 298.73756 * 26 25 24 48 48 H 1.09006 * 109.54530 * 178.62599 * 26 25 24 49 49 H 1.09004 * 109.50986 * 302.32707 * 27 22 21 50 50 H 1.09010 * 109.50745 * 62.41541 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2070 0.0415 -0.0005 7 6 4.0744 2.5754 -0.0011 8 6 4.3019 3.0226 -1.4221 9 8 3.9393 2.3225 -2.3436 10 7 4.9039 4.2030 -1.6689 11 6 5.3374 5.0510 -0.5557 12 6 6.7517 4.6961 -0.1751 13 1 7.2751 3.9166 -0.7088 14 6 7.3771 5.3659 0.8550 15 7 6.7396 6.3148 1.5053 16 14 9.1300 4.9256 1.3273 17 1 10.0777 5.7569 0.5425 18 1 9.3310 5.1801 2.7764 19 1 9.3747 3.4896 1.0383 20 6 5.1256 4.6375 -3.0502 21 6 3.9177 5.4440 -3.5313 22 7 4.1397 5.8792 -4.9166 23 6 5.2483 6.8416 -4.9953 24 6 5.4838 7.2221 -6.4595 25 8 4.2727 7.7451 -7.0116 26 6 3.1722 6.8337 -6.9520 27 6 2.9132 6.4492 -5.4928 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.4053 -0.2630 1.0272 32 1 3.6584 -0.7482 -0.5140 33 1 5.1512 0.2212 -0.5147 34 1 5.0325 2.4952 0.5125 35 1 3.4465 3.3033 0.5128 36 1 5.2941 6.0973 -0.8578 37 1 4.6803 4.8922 0.2993 38 1 7.1796 6.7863 2.2297 39 1 6.0195 5.2595 -3.0965 40 1 5.2570 3.7642 -3.6892 41 1 3.0238 4.8221 -3.4851 42 1 3.7861 6.3173 -2.8924 43 1 4.9965 7.7345 -4.4232 44 1 6.1523 6.3897 -4.5868 45 1 5.7879 6.3385 -7.0207 46 1 6.2668 7.9780 -6.5183 47 1 3.4089 5.9389 -7.5276 48 1 2.2828 7.3084 -7.3667 49 1 2.1125 5.7110 -5.4475 50 1 2.6236 7.3356 -4.9282 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490937275.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:48 Heat of formation + Delta-G solvation = -160.519399 kcal Electronic energy + Delta-G solvation = -31653.513061 eV Core-core repulsion = 27295.019675 eV Total energy + Delta-G solvation = -4358.493386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79150 -40.88550 -40.35151 -37.95371 -37.34049 -36.57041 -36.39673 -34.53912 -32.27760 -31.68752 -29.93127 -29.03117 -28.62861 -27.38478 -26.46965 -25.06629 -24.90010 -23.48648 -21.93086 -21.39191 -20.12750 -19.19653 -18.65446 -18.38962 -18.13040 -17.78802 -17.38840 -17.17464 -16.89676 -16.39447 -16.25107 -16.09411 -15.99038 -15.68668 -15.38608 -15.14457 -14.89881 -14.61825 -14.37965 -14.31543 -14.01374 -13.81553 -13.65017 -13.38147 -13.33384 -13.18372 -12.97176 -12.88394 -12.86568 -12.59755 -12.50432 -12.34754 -12.12522 -11.90732 -11.81470 -11.75222 -11.71347 -11.47866 -11.12513 -10.73917 -10.60339 -9.84615 -9.63621 -9.45326 -8.19497 -6.35279 1.02065 1.45262 1.48017 1.56672 1.61567 1.66079 2.14468 2.44106 2.77960 2.93171 2.98966 3.11842 3.62446 3.80858 3.90188 3.95131 4.05581 4.10802 4.16503 4.22873 4.28945 4.35101 4.35273 4.35895 4.39576 4.40772 4.54996 4.65991 4.67481 4.68772 4.74035 4.77577 4.80260 4.88574 4.88953 4.93385 4.98209 5.10107 5.17373 5.23616 5.62241 5.73321 5.84977 5.87885 6.02973 6.13799 6.16903 6.48637 6.78374 7.10005 7.22946 7.38932 8.86447 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006391 B = 0.004252 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4379.871927 B = 6584.199166 C =10216.086720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.647 3.353 4 O -0.609 6.609 5 N -0.581 5.581 6 C 0.086 3.914 7 C 0.124 3.876 8 C 0.500 3.500 9 O -0.582 6.582 10 N -0.594 5.594 11 C 0.251 3.749 12 C -0.545 4.545 13 H 0.061 0.939 14 C 0.025 3.975 15 N -0.920 5.920 16 Si 0.958 3.042 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.132 3.868 21 C 0.060 3.940 22 N -0.537 5.537 23 C 0.011 3.989 24 C 0.068 3.932 25 O -0.402 6.402 26 C 0.068 3.932 27 C 0.016 3.984 28 H 0.053 0.947 29 H 0.143 0.857 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.018 0.982 37 H 0.029 0.971 38 H 0.268 0.732 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.026 0.974 43 H 0.033 0.967 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.117 0.883 47 H 0.065 0.935 48 H 0.120 0.880 49 H 0.089 0.911 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -7.054 -7.963 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.279 6.279 3 C 0.402 3.598 4 O -0.501 6.501 5 N -0.319 5.319 6 C -0.055 4.055 7 C -0.001 4.001 8 C 0.288 3.712 9 O -0.463 6.463 10 N -0.325 5.325 11 C 0.131 3.869 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.176 4.176 15 N -0.559 5.559 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.188 1.188 20 C 0.008 3.992 21 C -0.069 4.069 22 N -0.263 5.263 23 C -0.117 4.117 24 C -0.009 4.009 25 O -0.321 6.321 26 C -0.009 4.009 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.036 0.964 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.135 0.865 47 H 0.083 0.917 48 H 0.138 0.862 49 H 0.108 0.892 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.213 -7.257 -8.638 12.879 hybrid contribution 0.455 0.816 1.237 1.550 sum -5.758 -6.441 -7.401 11.376 Atomic orbital electron populations 1.23518 0.72875 1.05780 1.02330 1.86235 1.25704 1.29262 1.86719 1.18192 0.83485 0.82406 0.75741 1.90945 1.65206 1.36334 1.57611 1.46315 1.02309 1.08459 1.74846 1.21977 0.95853 0.84186 1.03533 1.21296 1.00375 0.84307 0.94111 1.21231 0.76860 0.80997 0.92153 1.90589 1.53170 1.55522 1.47058 1.48156 1.57137 1.19305 1.07939 1.19154 0.94716 0.89484 0.83588 1.21630 0.99012 1.20465 1.17269 0.92089 1.25649 1.01753 0.94462 0.95736 1.70022 1.39033 1.23953 1.22890 0.85554 0.79860 0.79031 0.77253 1.20367 1.20967 1.18833 1.21177 0.97111 0.98873 0.82001 1.22215 0.98761 0.97769 0.88156 1.62168 1.06665 1.39307 1.18121 1.22943 0.95559 0.94157 0.99047 1.22757 0.87015 1.00269 0.90819 1.87941 1.20076 1.42369 1.81723 1.22763 0.90363 0.93978 0.93760 1.22873 0.92476 0.98732 0.97176 0.92842 0.83930 0.91897 0.89794 0.89693 0.90677 0.84650 0.88017 0.96362 0.95279 0.92318 0.90191 0.90821 0.92213 0.95574 0.94851 0.89044 0.91543 0.86520 0.91691 0.86248 0.89245 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.01 10.56 113.37 1.20 2.20 16 2 O -0.37 -10.45 9.39 -55.47 -0.52 -10.97 16 3 C 0.65 23.32 8.39 129.79 1.09 24.41 16 4 O -0.61 -25.93 15.71 19.83 0.31 -25.62 16 5 N -0.58 -19.64 2.36 -981.66 -2.32 -21.96 16 6 C 0.09 2.14 10.44 127.77 1.33 3.48 16 7 C 0.12 4.67 4.44 85.63 0.38 5.05 16 8 C 0.50 21.02 7.74 87.65 0.68 21.70 16 9 O -0.58 -26.56 16.01 -3.01 -0.05 -26.61 16 10 N -0.59 -24.89 2.46 -826.17 -2.03 -26.92 16 11 C 0.25 11.64 4.96 85.63 0.43 12.07 16 12 C -0.55 -26.59 9.28 25.60 0.24 -26.35 16 13 H 0.06 2.97 7.81 -2.91 -0.02 2.94 16 14 C 0.02 1.24 5.46 84.65 0.46 1.70 16 15 N -0.92 -49.01 13.29 21.45 0.28 -48.72 16 16 Si 0.96 39.52 29.54 68.60 2.03 41.55 16 17 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 20 C 0.13 4.96 5.34 86.38 0.46 5.42 16 21 C 0.06 2.09 5.28 86.30 0.46 2.55 16 22 N -0.54 -15.84 4.73 -895.18 -4.23 -20.07 16 23 C 0.01 0.29 5.44 86.32 0.47 0.76 16 24 C 0.07 1.51 7.01 72.02 0.50 2.02 16 25 O -0.40 -9.90 10.83 -148.98 -1.61 -11.52 16 26 C 0.07 1.43 7.01 72.02 0.50 1.94 16 27 C 0.02 0.39 5.64 86.32 0.49 0.88 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 1.95 7.37 -2.38 -0.02 1.93 16 33 H 0.07 1.88 8.07 -2.39 -0.02 1.86 16 34 H 0.14 4.78 7.93 -2.38 -0.02 4.77 16 35 H 0.10 4.07 6.68 -2.39 -0.02 4.06 16 36 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 37 H 0.03 1.41 6.44 -2.39 -0.02 1.40 16 38 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 39 H 0.08 2.94 6.45 -2.39 -0.02 2.93 16 40 H 0.07 2.87 7.43 -2.38 -0.02 2.85 16 41 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 42 H 0.03 0.96 8.12 -2.38 -0.02 0.94 16 43 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 2.45 6.38 -2.38 -0.02 2.43 16 45 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 49 H 0.09 2.16 8.09 -2.38 -0.02 2.14 16 50 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -67.44 409.23 1.47 -65.97 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.92 Total: 27.06 kcal Atomic # 6 Polarization: 49.13 SS G_CDS: 8.69 Total: 57.82 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -8.29 Total: -117.68 kcal Atomic # 8 Polarization: -72.85 SS G_CDS: -1.87 Total: -74.72 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -67.44 1.47 -65.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490937275.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.547 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds