Wall clock time and date at job start Wed Apr 1 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47566 * 2 1 4 4 C 1.53002 * 109.47128 * 240.00142 * 2 1 3 5 5 O 1.45198 * 109.47086 * 120.00109 * 2 1 3 6 6 C 1.34636 * 117.00027 * 60.00010 * 5 2 1 7 7 O 1.21514 * 119.99977 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00213 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00389 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47566 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.54268 * 59.88664 * 10 9 8 12 12 C 1.53093 * 109.50978 * 179.97438 * 10 9 8 13 13 N 1.47016 * 109.26034 * 176.78195 * 12 10 9 14 14 C 1.46900 * 110.99935 * 177.61128 * 13 12 10 15 15 C 1.50707 * 109.46713 * 293.63546 * 14 13 12 16 16 O 1.21293 * 120.00052 * 353.81086 * 15 14 13 17 17 N 1.34777 * 119.99608 * 173.81134 * 15 14 13 18 18 C 1.37102 * 119.99820 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99574 * 359.97438 * 18 17 15 20 20 C 1.38942 * 119.99759 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00409 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99685 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47258 * 90.00274 * 22 20 18 24 24 H 1.48502 * 109.47245 * 209.99732 * 22 20 18 25 25 H 1.48498 * 109.47147 * 330.00109 * 22 20 18 26 26 C 1.47015 * 110.75341 * 301.38475 * 13 12 10 27 27 C 1.53097 * 109.25945 * 58.61247 * 26 13 12 28 28 O 1.43016 * 109.50376 * 299.78372 * 10 9 8 29 29 H 1.09003 * 109.47166 * 300.00175 * 1 2 3 30 30 H 1.09005 * 109.46745 * 59.99725 * 1 2 3 31 31 H 1.08998 * 109.47680 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47501 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47303 * 300.00478 * 3 2 1 34 34 H 1.09003 * 109.47021 * 59.99736 * 3 2 1 35 35 H 1.09002 * 109.46647 * 300.00019 * 4 2 1 36 36 H 1.08994 * 109.47102 * 59.99664 * 4 2 1 37 37 H 1.08994 * 109.47195 * 180.02562 * 4 2 1 38 38 H 0.97003 * 120.00191 * 359.97438 * 8 6 5 39 39 H 1.09004 * 109.47002 * 59.99771 * 9 8 6 40 40 H 1.08995 * 109.47349 * 299.99876 * 9 8 6 41 41 H 1.09008 * 109.50800 * 56.84642 * 12 10 9 42 42 H 1.08998 * 109.50842 * 296.72001 * 12 10 9 43 43 H 1.08996 * 109.47322 * 53.63878 * 14 13 12 44 44 H 1.09001 * 109.47034 * 173.64221 * 14 13 12 45 45 H 0.97003 * 120.00312 * 359.97438 * 17 15 14 46 46 H 0.97001 * 120.00074 * 179.97438 * 21 20 18 47 47 H 1.08994 * 109.50942 * 178.54965 * 26 13 12 48 48 H 1.09009 * 109.50587 * 298.63791 * 26 13 12 49 49 H 1.09000 * 109.50453 * 63.08222 * 27 26 13 50 50 H 1.08997 * 109.51059 * 183.21793 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5039 8 7 2.0671 -2.6655 2.4171 9 6 1.6731 -4.0666 2.5836 10 6 2.2732 -4.6147 3.8798 11 1 1.9095 -4.0309 4.7254 12 6 1.8614 -6.0787 4.0550 13 7 2.5032 -6.6221 5.2608 14 6 2.0886 -8.0114 5.4972 15 6 0.6200 -8.0469 5.8340 16 8 0.0069 -7.0111 5.9836 17 7 -0.0119 -9.2297 5.9689 18 6 -1.3480 -9.2620 6.2747 19 1 -1.8939 -8.3397 6.4079 20 6 -1.9996 -10.4813 6.4132 21 7 -1.3355 -11.6035 6.2506 22 14 -3.8199 -10.5253 6.8306 23 1 -4.6155 -10.5247 5.5767 24 1 -4.1202 -11.7553 7.6066 25 1 -4.1711 -9.3311 7.6403 26 6 3.9665 -6.5183 5.1638 27 6 4.3573 -5.0499 4.9776 28 8 3.6996 -4.5294 3.8191 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7216 -1.2491 38 1 2.6267 -2.2366 3.0833 39 1 2.0395 -4.6499 1.7388 40 1 0.5862 -4.1355 2.6285 41 1 2.1780 -6.6526 3.1840 42 1 0.7782 -6.1422 4.1592 43 1 2.2700 -8.6025 4.5996 44 1 2.6617 -8.4255 6.3269 45 1 0.4783 -10.0581 5.8488 46 1 -1.7904 -12.4547 6.3477 47 1 4.4200 -6.9026 6.0774 48 1 4.3169 -7.0999 4.3110 49 1 4.0544 -4.4785 5.8550 50 1 5.4369 -4.9741 4.8480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495553721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:55 Heat of formation + Delta-G solvation = -155.522853 kcal Electronic energy + Delta-G solvation = -30648.655791 eV Core-core repulsion = 26290.379071 eV Total energy + Delta-G solvation = -4358.276720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.87865 -39.82501 -38.15759 -37.48331 -35.48635 -34.89248 -34.13937 -33.83601 -31.56751 -31.25803 -29.15102 -27.66530 -27.59682 -26.88657 -25.26018 -23.87760 -23.00182 -21.82783 -20.63713 -19.99921 -19.23824 -18.31382 -17.89277 -16.87086 -16.69872 -16.31747 -16.08723 -15.87363 -15.62119 -15.04543 -14.79415 -14.68568 -14.60828 -14.38947 -14.12845 -13.74510 -13.64055 -13.39977 -13.35609 -13.18419 -12.76866 -12.40008 -12.35031 -12.13422 -12.11868 -11.99337 -11.74793 -11.62873 -11.54373 -11.51592 -11.29397 -11.21984 -10.97090 -10.57945 -10.53928 -10.41052 -10.24447 -10.18182 -9.72688 -9.50496 -9.26735 -8.51148 -8.04535 -7.96365 -6.44355 -3.85325 2.03294 2.76806 3.16243 3.25373 3.30925 3.55232 3.79130 3.86206 4.05344 4.20228 4.47410 4.51627 4.66051 4.72086 4.88408 4.98624 5.03358 5.11525 5.20477 5.20937 5.26335 5.28582 5.30641 5.39185 5.43270 5.49597 5.51641 5.57198 5.62403 5.69601 5.72586 5.75515 5.79614 5.82952 5.99683 6.05151 6.07148 6.14813 6.22525 6.24268 6.40422 7.01848 7.07951 7.21169 7.33986 7.52783 8.03106 8.29719 8.58166 9.15142 9.50947 10.02114 10.73219 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002162 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.905660 B =12949.833133 C =14595.953509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.569 6.569 8 N -0.702 5.702 9 C 0.148 3.852 10 C 0.085 3.915 11 H 0.079 0.921 12 C 0.028 3.972 13 N -0.512 5.512 14 C 0.047 3.953 15 C 0.442 3.558 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.015 3.985 27 C 0.068 3.932 28 O -0.385 6.385 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.112 0.888 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.061 0.939 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.234 18.586 -9.738 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.403 3.597 7 O -0.459 6.459 8 N -0.361 5.361 9 C 0.025 3.975 10 C 0.027 3.973 11 H 0.097 0.903 12 C -0.100 4.100 13 N -0.237 5.237 14 C -0.085 4.085 15 C 0.227 3.773 16 O -0.462 6.462 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.114 4.114 27 C -0.009 4.009 28 O -0.304 6.304 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.130 0.870 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.059 0.941 49 H 0.079 0.921 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.332 19.228 -9.836 24.390 hybrid contribution -0.157 -1.251 0.001 1.261 sum 11.175 17.976 -9.834 23.340 Atomic orbital electron populations 1.22524 0.93950 1.05235 1.02427 1.22051 0.94413 0.91447 0.82156 1.21858 1.02203 0.92610 1.03079 1.22515 1.01503 1.03622 0.96424 1.86293 1.71632 1.23741 1.46424 1.18045 0.78956 0.80459 0.82287 1.90909 1.41195 1.70455 1.43326 1.44558 1.55367 1.12459 1.23696 1.21360 1.00162 0.78851 0.97090 1.22368 0.81282 0.96508 0.97130 0.90271 1.22740 1.03070 0.93502 0.90723 1.61757 1.05284 1.19500 1.37156 1.21886 0.96968 0.88486 1.01121 1.19703 0.87903 0.84756 0.84957 1.90499 1.67371 1.32626 1.55714 1.41881 1.10153 1.06473 1.61423 1.19691 0.84503 0.94277 1.44376 0.87870 1.25268 1.00513 0.94723 0.97438 1.69609 1.37178 0.97665 1.49773 0.85858 0.82054 0.77803 0.78586 1.20387 1.20928 1.19393 1.22833 0.89202 0.97735 1.01609 1.22625 0.96976 0.92690 0.88561 1.87945 1.18360 1.82785 1.41295 0.92142 0.91218 0.89240 0.91509 0.90196 0.91474 0.89294 0.91219 0.92221 0.75572 0.90387 0.89099 0.94380 0.86975 0.93316 0.89038 0.77488 0.91845 0.89611 0.94144 0.92109 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 2 C 0.14 1.31 1.13 -90.62 -0.10 1.21 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.73 8.37 37.16 0.31 -1.41 16 5 O -0.37 -4.28 9.94 -40.31 -0.40 -4.68 16 6 C 0.65 8.54 8.06 54.05 0.44 8.98 16 7 O -0.57 -8.70 11.88 -19.28 -0.23 -8.93 16 8 N -0.70 -8.22 5.45 -65.28 -0.36 -8.57 16 9 C 0.15 1.84 5.37 -4.04 -0.02 1.82 16 10 C 0.09 1.10 2.89 -26.68 -0.08 1.03 16 11 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 12 C 0.03 0.44 4.58 -3.71 -0.02 0.42 16 13 N -0.51 -8.12 4.42 -235.74 -1.04 -9.16 16 14 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 15 C 0.44 10.08 7.36 -10.98 -0.08 10.00 16 16 O -0.58 -15.01 14.25 5.55 0.08 -14.93 16 17 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 18 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.86 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.01 0.18 5.65 -3.71 -0.02 0.16 16 27 C 0.07 0.73 7.01 37.21 0.26 0.99 16 28 O -0.38 -4.72 10.23 -35.23 -0.36 -5.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 4.14 8.47 -40.82 -0.35 3.79 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.11 2.08 6.10 -51.93 -0.32 1.76 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 44 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 45 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 48 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -32.06 401.56 -7.84 -39.90 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.28 Total: 13.03 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 1.06 Total: 14.03 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.73 Total: -55.26 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.91 Total: -33.62 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.06 -7.84 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495553721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.620 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds