Wall clock time and date at job start Wed Apr 1 2020 02:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00144 * 2 1 4 4 N 1.46492 * 109.47568 * 124.99621 * 3 2 1 5 5 C 1.37499 * 127.17647 * 270.31719 * 4 3 2 6 6 C 1.47949 * 126.47687 * 0.02562 * 5 4 3 7 7 C 1.36709 * 126.93511 * 180.02562 * 6 5 4 8 8 N 1.35202 * 106.01278 * 179.97438 * 7 6 5 9 9 C 1.46513 * 125.72886 * 179.97438 * 8 7 6 10 10 N 1.28635 * 108.54558 * 359.97438 * 8 7 6 11 11 N 1.28611 * 110.54053 * 359.71857 * 10 8 7 12 12 N 1.31227 * 107.04924 * 179.83454 * 5 4 3 13 13 N 1.28508 * 109.96109 * 0.44360 * 12 5 4 14 14 C 1.31249 * 110.09593 * 359.71340 * 13 12 5 15 15 N 1.38536 * 126.38161 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00252 * 256.23440 * 15 14 13 17 17 C 1.50704 * 109.47114 * 59.20727 * 16 15 14 18 18 H 1.07998 * 119.99893 * 3.86569 * 17 16 15 19 19 C 1.37878 * 119.99749 * 183.86754 * 17 16 15 20 20 N 1.31517 * 119.99498 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46945 * 90.00414 * 21 19 17 23 23 H 1.48502 * 109.47304 * 210.00087 * 21 19 17 24 24 H 1.48496 * 109.47397 * 330.00399 * 21 19 17 25 25 C 1.46907 * 110.99663 * 20.18855 * 15 14 13 26 26 C 1.52998 * 109.47066 * 163.99008 * 25 15 14 27 27 C 1.52997 * 117.49743 * 243.46036 * 26 25 15 28 28 C 1.52994 * 117.49953 * 174.80115 * 26 25 15 29 29 H 1.07998 * 120.00160 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99834 * 359.72969 * 1 2 3 31 31 H 1.08001 * 120.00126 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46843 * 245.00072 * 3 2 1 33 33 H 1.09007 * 109.46996 * 4.99412 * 3 2 1 34 34 H 1.07996 * 126.98972 * 359.97240 * 7 6 5 35 35 H 1.08998 * 109.46813 * 89.99989 * 9 8 7 36 36 H 1.08995 * 109.46713 * 210.00345 * 9 8 7 37 37 H 1.08998 * 109.46565 * 330.00135 * 9 8 7 38 38 H 1.09002 * 109.46955 * 179.20436 * 16 15 14 39 39 H 1.08995 * 109.47197 * 299.20770 * 16 15 14 40 40 H 0.97002 * 119.99946 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46479 * 283.98949 * 25 15 14 42 42 H 1.08991 * 109.47185 * 43.98575 * 25 15 14 43 43 H 1.09002 * 115.55105 * 29.12889 * 26 25 15 44 44 H 1.08999 * 117.50098 * 359.97438 * 27 26 25 45 45 H 1.09000 * 117.50000 * 145.01835 * 27 26 25 46 46 H 1.09002 * 117.50068 * 214.97489 * 28 26 25 47 47 H 1.09011 * 117.49925 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7422 1.7905 2.4031 6 6 1.4681 2.3567 2.8980 7 6 1.2080 2.8155 4.1592 8 7 -0.0770 3.2355 4.1457 9 6 -0.8014 3.8100 5.2823 10 7 -0.5570 3.0461 2.9673 11 7 0.3331 2.5309 2.1950 12 7 3.8446 1.6271 3.0960 13 7 4.7582 1.1137 2.3523 14 6 4.2937 0.9122 1.1414 15 7 4.9917 0.3747 0.0723 16 6 5.3887 1.4226 -0.8776 17 6 6.2551 2.4358 -0.1747 18 1 6.5390 2.2813 0.8557 19 6 6.6851 3.5599 -0.8473 20 7 7.4407 4.4443 -0.2337 21 14 6.1945 3.8267 -2.6298 22 1 4.9193 4.5858 -2.6839 23 1 7.2577 4.5948 -3.3262 24 1 6.0165 2.5118 -3.2964 25 6 6.1600 -0.3861 0.5355 26 6 6.6683 -1.2801 -0.5973 27 6 6.6122 -2.7938 -0.3819 28 6 7.9582 -2.0655 -0.3528 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 2.6214 1.4025 -0.9315 33 1 1.3586 2.1317 0.0895 34 1 1.8902 2.8378 4.9961 35 1 -0.6709 4.8922 5.2867 36 1 -1.8615 3.5722 5.1951 37 1 -0.4105 3.3931 6.2104 38 1 5.9471 0.9750 -1.6998 39 1 4.4983 1.9148 -1.2686 40 1 7.7437 5.2351 -0.7069 41 1 6.9481 0.3050 0.8346 42 1 5.8766 -1.0044 1.3871 43 1 6.4890 -0.9083 -1.6061 44 1 6.2136 -3.1527 0.5669 45 1 6.3964 -3.4179 -1.2491 46 1 8.6275 -2.2109 -1.2008 47 1 8.4451 -1.9450 0.6151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597284122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:35 Heat of formation + Delta-G solvation = 251.198529 kcal Electronic energy + Delta-G solvation = -30595.284724 eV Core-core repulsion = 26626.539189 eV Total energy + Delta-G solvation = -3968.745535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.31478 -42.20082 -37.94580 -35.91328 -35.65593 -34.78557 -32.52137 -32.40370 -31.76736 -28.95625 -28.22199 -27.81578 -26.57414 -25.45514 -23.70480 -22.55518 -22.04916 -21.82001 -20.73997 -20.48615 -19.68359 -19.21953 -17.68931 -17.09944 -16.79249 -16.50001 -15.94490 -15.71478 -15.19559 -14.82732 -14.61110 -14.45795 -14.13265 -13.96034 -13.58749 -13.49464 -13.35154 -13.21716 -12.55404 -12.39397 -12.22442 -11.87569 -11.50499 -11.42200 -11.41043 -11.17923 -11.04196 -11.02518 -10.76045 -10.57697 -10.50709 -10.33244 -10.00599 -9.90484 -9.83567 -9.65892 -9.51024 -9.39429 -9.37782 -8.66357 -8.46572 -7.43480 -6.13935 -4.15907 1.32421 1.83112 2.08183 2.20488 2.83954 3.04269 3.20483 3.28430 3.29426 3.64990 3.95091 4.16144 4.30683 4.32244 4.52141 4.66068 4.72841 4.94501 4.98113 5.01549 5.13103 5.14677 5.20469 5.31774 5.33313 5.42176 5.44391 5.67535 5.75434 5.84427 5.87286 5.93264 5.97032 6.03936 6.19766 6.23865 6.37834 6.41294 6.48815 6.61719 6.65877 6.69161 6.74882 6.82465 6.83618 7.10597 7.33114 7.62006 7.99118 8.32432 8.36036 8.95859 9.34375 9.44760 10.98549 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003957 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.515926 B = 7074.597029 C = 8061.883059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.167 4.167 3 C 0.140 3.860 4 N -0.457 5.457 5 C 0.229 3.771 6 C 0.070 3.930 7 C -0.004 4.004 8 N -0.295 5.295 9 C 0.083 3.917 10 N -0.082 5.082 11 N -0.253 5.253 12 N -0.262 5.262 13 N -0.313 5.313 14 C 0.419 3.581 15 N -0.458 5.458 16 C 0.159 3.841 17 C -0.557 4.557 18 H 0.091 0.909 19 C 0.080 3.920 20 N -0.887 5.887 21 Si 0.869 3.131 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.263 1.263 25 C 0.105 3.895 26 C -0.132 4.132 27 C -0.184 4.184 28 C -0.178 4.178 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.203 0.797 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.768 -6.991 6.290 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.018 3.982 4 N -0.150 5.150 5 C -0.037 4.037 6 C -0.069 4.069 7 C -0.158 4.158 8 N -0.088 5.088 9 C -0.058 4.058 10 N -0.062 5.062 11 N -0.122 5.122 12 N -0.105 5.105 13 N -0.159 5.159 14 C 0.063 3.937 15 N -0.182 5.182 16 C 0.034 3.966 17 C -0.596 4.596 18 H 0.109 0.891 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.695 3.305 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.022 4.022 26 C -0.151 4.151 27 C -0.221 4.221 28 C -0.216 4.216 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.220 0.780 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.272 -6.956 6.243 17.905 hybrid contribution 0.302 0.869 -1.035 1.385 sum -14.970 -6.087 5.209 16.979 Atomic orbital electron populations 1.23902 0.95584 1.02145 0.98463 1.23021 0.96072 0.97950 1.01554 1.21004 0.91650 0.97588 0.87960 1.45966 1.10511 1.48115 1.10393 1.20603 0.94210 1.06284 0.82636 1.18442 0.91389 1.05672 0.91350 1.23470 0.87272 1.03972 1.01039 1.47065 1.09619 1.41162 1.10929 1.22298 0.98399 1.00167 0.84952 1.78184 1.21727 1.17458 0.88859 1.75271 0.98182 1.14326 1.24447 1.74153 0.96075 1.14662 1.25604 1.74656 1.20707 1.19320 1.01169 1.22337 0.82483 0.95609 0.93295 1.59170 1.24400 1.24430 1.10172 1.20409 0.95977 0.88782 0.91468 1.21686 1.31840 1.04850 1.01178 0.89075 1.24882 0.94336 0.95560 0.97619 1.69919 1.34651 1.10971 1.36901 0.86971 0.78679 0.78985 0.85843 1.20226 1.20920 1.18761 1.21504 0.91235 0.94915 0.94539 1.22212 1.00289 0.91907 1.00667 1.23009 1.01209 0.95389 1.02527 1.22921 0.90853 1.04792 1.03016 0.88499 0.87650 0.86910 0.87941 0.87733 0.77971 0.88889 0.87992 0.88040 0.93366 0.95805 0.92570 0.90350 0.91333 0.87380 0.89221 0.89456 0.89097 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 14.32 29.01 0.42 -1.61 16 2 C -0.17 -2.40 9.85 -36.03 -0.35 -2.75 16 3 C 0.14 2.35 6.27 -5.20 -0.03 2.32 16 4 N -0.46 -9.05 2.82 -115.91 -0.33 -9.37 16 5 C 0.23 4.51 7.94 -153.82 -1.22 3.29 16 6 C 0.07 1.15 7.06 -83.21 -0.59 0.57 16 7 C 0.00 -0.05 11.59 -16.62 -0.19 -0.25 16 8 N -0.29 -3.13 3.73 -67.72 -0.25 -3.38 16 9 C 0.08 0.38 11.38 59.85 0.68 1.06 16 10 N -0.08 -1.14 13.13 60.35 0.79 -0.34 16 11 N -0.25 -4.03 10.76 33.01 0.36 -3.68 16 12 N -0.26 -5.69 12.21 32.60 0.40 -5.29 16 13 N -0.31 -7.33 10.94 30.34 0.33 -7.00 16 14 C 0.42 9.14 5.80 -318.69 -1.85 7.29 16 15 N -0.46 -9.51 4.70 -175.84 -0.83 -10.34 16 16 C 0.16 3.65 3.97 -4.97 -0.02 3.63 16 17 C -0.56 -15.36 8.16 -34.44 -0.28 -15.64 16 18 H 0.09 2.83 6.50 -52.49 -0.34 2.48 16 19 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 20 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 21 Si 0.87 20.86 27.39 -169.99 -4.66 16.20 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -5.91 6.65 56.52 0.38 -5.54 16 25 C 0.11 2.04 4.58 -3.82 -0.02 2.02 16 26 C -0.13 -2.17 5.69 -90.62 -0.52 -2.68 16 27 C -0.18 -2.49 10.18 -26.70 -0.27 -2.76 16 28 C -0.18 -2.51 10.25 -26.70 -0.27 -2.79 16 29 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.11 1.32 7.84 -52.48 -0.41 0.90 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.10 1.74 6.49 -51.92 -0.34 1.40 16 33 H 0.10 1.71 6.36 -51.92 -0.33 1.38 16 34 H 0.20 1.98 8.06 -52.49 -0.42 1.55 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.05 1.08 5.93 -51.93 -0.31 0.78 16 39 H 0.02 0.55 5.79 -51.93 -0.30 0.25 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 1.77 6.45 -51.93 -0.33 1.43 16 42 H 0.07 1.29 7.57 -51.93 -0.39 0.90 16 43 H 0.11 1.84 6.78 -51.93 -0.35 1.49 16 44 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -35.01 392.11 -8.61 -43.62 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.49 Total: 6.06 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -4.62 Total: -6.13 kcal Atomic # 7 Polarization: -66.91 SS G_CDS: 1.25 Total: -65.67 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.66 Total: 16.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.01 -8.61 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597284122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 294.823 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 259.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 251.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds