Wall clock time and date at job start Wed Apr 1 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00144 * 2 1 4 4 N 1.46492 * 109.47568 * 124.99621 * 3 2 1 5 5 C 1.37499 * 127.17647 * 270.31719 * 4 3 2 6 6 C 1.47949 * 126.47687 * 0.02562 * 5 4 3 7 7 C 1.36709 * 126.93511 * 180.02562 * 6 5 4 8 8 N 1.35202 * 106.01278 * 179.97438 * 7 6 5 9 9 C 1.46513 * 125.72886 * 179.97438 * 8 7 6 10 10 N 1.28635 * 108.54558 * 359.97438 * 8 7 6 11 11 N 1.28611 * 110.54053 * 359.71857 * 10 8 7 12 12 N 1.31227 * 107.04924 * 179.83454 * 5 4 3 13 13 N 1.28508 * 109.96109 * 0.44360 * 12 5 4 14 14 C 1.31249 * 110.09593 * 359.71340 * 13 12 5 15 15 N 1.38536 * 126.38161 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00252 * 256.23440 * 15 14 13 17 17 C 1.50704 * 109.47114 * 59.20727 * 16 15 14 18 18 H 1.07998 * 119.99893 * 3.86569 * 17 16 15 19 19 C 1.37878 * 119.99749 * 183.86754 * 17 16 15 20 20 N 1.31517 * 119.99498 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00126 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46945 * 90.00414 * 21 19 17 23 23 H 1.48502 * 109.47304 * 210.00087 * 21 19 17 24 24 H 1.48496 * 109.47397 * 330.00399 * 21 19 17 25 25 C 1.46907 * 110.99663 * 20.18855 * 15 14 13 26 26 C 1.52998 * 109.47066 * 163.99008 * 25 15 14 27 27 C 1.52997 * 117.49743 * 243.46036 * 26 25 15 28 28 C 1.52994 * 117.49953 * 174.80115 * 26 25 15 29 29 H 1.07998 * 120.00160 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99834 * 359.72969 * 1 2 3 31 31 H 1.08001 * 120.00126 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46843 * 245.00072 * 3 2 1 33 33 H 1.09007 * 109.46996 * 4.99412 * 3 2 1 34 34 H 1.07996 * 126.98972 * 359.97240 * 7 6 5 35 35 H 1.08998 * 109.46813 * 89.99989 * 9 8 7 36 36 H 1.08995 * 109.46713 * 210.00345 * 9 8 7 37 37 H 1.08998 * 109.46565 * 330.00135 * 9 8 7 38 38 H 1.09002 * 109.46955 * 179.20436 * 16 15 14 39 39 H 1.08995 * 109.47197 * 299.20770 * 16 15 14 40 40 H 0.97002 * 119.99946 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46479 * 283.98949 * 25 15 14 42 42 H 1.08991 * 109.47185 * 43.98575 * 25 15 14 43 43 H 1.09002 * 115.55105 * 29.12889 * 26 25 15 44 44 H 1.08999 * 117.50098 * 359.97438 * 27 26 25 45 45 H 1.09000 * 117.50000 * 145.01835 * 27 26 25 46 46 H 1.09002 * 117.50068 * 214.97489 * 28 26 25 47 47 H 1.09011 * 117.49925 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7422 1.7905 2.4031 6 6 1.4681 2.3567 2.8980 7 6 1.2080 2.8155 4.1592 8 7 -0.0770 3.2355 4.1457 9 6 -0.8014 3.8100 5.2823 10 7 -0.5570 3.0461 2.9673 11 7 0.3331 2.5309 2.1950 12 7 3.8446 1.6271 3.0960 13 7 4.7582 1.1137 2.3523 14 6 4.2937 0.9122 1.1414 15 7 4.9917 0.3747 0.0723 16 6 5.3887 1.4226 -0.8776 17 6 6.2551 2.4358 -0.1747 18 1 6.5390 2.2813 0.8557 19 6 6.6851 3.5599 -0.8473 20 7 7.4407 4.4443 -0.2337 21 14 6.1945 3.8267 -2.6298 22 1 4.9193 4.5858 -2.6839 23 1 7.2577 4.5948 -3.3262 24 1 6.0165 2.5118 -3.2964 25 6 6.1600 -0.3861 0.5355 26 6 6.6683 -1.2801 -0.5973 27 6 6.6122 -2.7938 -0.3819 28 6 7.9582 -2.0655 -0.3528 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 2.6214 1.4025 -0.9315 33 1 1.3586 2.1317 0.0895 34 1 1.8902 2.8378 4.9961 35 1 -0.6709 4.8922 5.2867 36 1 -1.8615 3.5722 5.1951 37 1 -0.4105 3.3931 6.2104 38 1 5.9471 0.9750 -1.6998 39 1 4.4983 1.9148 -1.2686 40 1 7.7437 5.2351 -0.7069 41 1 6.9481 0.3050 0.8346 42 1 5.8766 -1.0044 1.3871 43 1 6.4890 -0.9083 -1.6061 44 1 6.2136 -3.1527 0.5669 45 1 6.3964 -3.4179 -1.2491 46 1 8.6275 -2.2109 -1.2008 47 1 8.4451 -1.9450 0.6151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597284122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:34 Heat of formation + Delta-G solvation = 229.203526 kcal Electronic energy + Delta-G solvation = -30596.238499 eV Core-core repulsion = 26626.539189 eV Total energy + Delta-G solvation = -3969.699310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.38628 -43.74844 -39.45158 -37.29959 -36.99658 -35.70923 -34.61427 -33.69936 -33.03379 -30.58288 -29.62497 -28.80930 -27.91497 -27.09800 -25.04903 -24.23744 -23.15241 -22.97674 -22.09772 -21.80215 -20.90506 -20.73804 -19.14560 -18.79867 -17.85491 -17.75213 -17.39259 -17.18849 -16.62866 -16.22614 -15.98434 -15.86618 -15.51383 -15.42368 -14.72203 -14.55016 -14.50336 -14.16805 -14.06605 -13.84202 -13.47772 -13.36484 -13.18987 -12.90001 -12.70370 -12.51243 -12.42714 -12.31090 -12.23153 -12.14454 -12.08946 -11.77128 -11.58477 -11.39306 -11.18655 -11.04605 -10.93194 -10.86131 -10.76417 -10.47953 -10.02227 -9.09796 -8.32590 -6.39620 0.16652 0.63635 0.91998 1.30007 1.31307 1.34183 1.40873 1.43123 1.71298 2.11707 2.28996 2.69193 2.87456 3.01039 3.12963 3.53840 3.72760 3.77317 3.87371 3.91791 4.03071 4.06172 4.12887 4.18784 4.24342 4.34341 4.38081 4.41802 4.57159 4.65260 4.69084 4.73287 4.82184 4.84967 4.89056 4.92490 4.95135 5.00700 5.05318 5.09493 5.32266 5.35279 5.38521 5.52901 5.55969 5.62419 5.76040 5.83249 6.18766 6.33938 6.70833 7.24389 7.25230 7.72259 8.83914 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.003957 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.515926 B = 7074.597029 C = 8061.883059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.186 4.186 3 C 0.139 3.861 4 N -0.458 5.458 5 C 0.244 3.756 6 C 0.026 3.974 7 C 0.018 3.982 8 N -0.278 5.278 9 C 0.068 3.932 10 N -0.090 5.090 11 N -0.270 5.270 12 N -0.293 5.293 13 N -0.349 5.349 14 C 0.398 3.602 15 N -0.443 5.443 16 C 0.169 3.831 17 C -0.553 4.553 18 H 0.042 0.958 19 C 0.017 3.983 20 N -0.942 5.942 21 Si 0.938 3.062 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.233 1.233 25 C 0.116 3.884 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.173 4.173 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.564 -8.102 5.506 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.204 4.204 3 C 0.018 3.982 4 N -0.151 5.151 5 C -0.023 4.023 6 C -0.113 4.113 7 C -0.137 4.137 8 N -0.071 5.071 9 C -0.070 4.070 10 N -0.070 5.070 11 N -0.139 5.139 12 N -0.135 5.135 13 N -0.194 5.194 14 C 0.041 3.959 15 N -0.166 5.166 16 C 0.043 3.957 17 C -0.592 4.592 18 H 0.061 0.939 19 C -0.181 4.181 20 N -0.582 5.582 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.155 1.155 25 C -0.011 4.011 26 C -0.177 4.177 27 C -0.195 4.195 28 C -0.211 4.211 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.114 0.886 33 H 0.124 0.876 34 H 0.246 0.754 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.127 0.873 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.111 -8.088 5.481 20.578 hybrid contribution 1.004 1.286 -0.528 1.715 sum -17.107 -6.802 4.953 19.064 Atomic orbital electron populations 1.24084 0.94752 1.03328 0.95086 1.22814 0.96584 0.96480 1.04570 1.21164 0.91193 0.99221 0.86629 1.46234 1.10211 1.47427 1.11229 1.21199 0.94759 1.04045 0.82344 1.18473 0.90824 1.08704 0.93266 1.23840 0.88111 1.01504 1.00218 1.47538 1.09058 1.39287 1.11202 1.22907 0.98979 1.01221 0.83931 1.78092 1.21408 1.17540 0.89960 1.75212 0.98157 1.15116 1.25430 1.74041 0.96795 1.16513 1.26197 1.74530 1.22117 1.20383 1.02373 1.22483 0.83432 0.96733 0.93226 1.59273 1.24403 1.23241 1.09726 1.20229 0.95255 0.88356 0.91841 1.21829 1.31873 1.06039 0.99436 0.93933 1.25842 0.94257 0.95114 1.02922 1.70094 1.36827 1.11956 1.39286 0.85852 0.78194 0.80258 0.79591 1.19774 1.20712 1.15541 1.21372 0.89491 0.94245 0.96041 1.22086 1.03046 0.93501 0.99030 1.23074 0.99791 0.92975 1.03636 1.23028 0.90906 1.03571 1.03566 0.85975 0.87595 0.87213 0.88569 0.87582 0.75438 0.87128 0.86369 0.84951 0.91925 0.95229 0.92553 0.94683 0.91467 0.87686 0.88884 0.87050 0.87305 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 14.32 67.78 0.97 -2.09 16 2 C -0.19 -5.17 9.85 25.64 0.25 -4.91 16 3 C 0.14 4.68 6.27 85.63 0.54 5.21 16 4 N -0.46 -18.69 2.82 -520.63 -1.47 -20.16 16 5 C 0.24 9.90 7.94 136.28 1.08 10.98 16 6 C 0.03 0.86 7.06 40.93 0.29 1.15 16 7 C 0.02 0.42 11.59 83.82 0.97 1.39 16 8 N -0.28 -5.19 3.73 -368.16 -1.37 -6.56 16 9 C 0.07 0.36 11.38 127.76 1.45 1.82 16 10 N -0.09 -2.30 13.13 37.02 0.49 -1.82 16 11 N -0.27 -8.37 10.76 -49.48 -0.53 -8.90 16 12 N -0.29 -13.37 12.21 -50.78 -0.62 -13.99 16 13 N -0.35 -17.39 10.94 -57.92 -0.63 -18.03 16 14 C 0.40 18.20 5.80 260.05 1.51 19.71 16 15 N -0.44 -19.02 4.70 -710.22 -3.34 -22.35 16 16 C 0.17 7.91 3.97 85.56 0.34 8.25 16 17 C -0.55 -31.91 8.16 25.60 0.21 -31.70 16 18 H 0.04 2.84 6.50 -2.91 -0.02 2.82 16 19 C 0.02 1.01 5.47 84.65 0.46 1.47 16 20 N -0.94 -60.01 13.96 21.45 0.30 -59.71 16 21 Si 0.94 43.26 27.39 68.60 1.88 45.14 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.23 -9.51 6.65 99.48 0.66 -8.85 16 25 C 0.12 4.72 4.58 86.30 0.40 5.11 16 26 C -0.16 -5.15 5.69 -10.80 -0.06 -5.21 16 27 C -0.16 -3.96 10.18 30.62 0.31 -3.65 16 28 C -0.17 -4.71 10.25 30.62 0.31 -4.39 16 29 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.11 2.43 7.84 -2.91 -0.02 2.41 16 31 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.10 3.28 6.49 -2.38 -0.02 3.26 16 33 H 0.11 3.49 6.36 -2.38 -0.02 3.47 16 34 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 2.77 5.93 -2.39 -0.01 2.76 16 39 H 0.03 1.36 5.79 -2.39 -0.01 1.35 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.03 1.71 6.45 -2.39 -0.02 1.70 16 42 H 0.07 2.69 7.57 -2.39 -0.02 2.67 16 43 H 0.11 3.49 6.78 -2.39 -0.02 3.47 16 44 H 0.09 2.29 8.03 -2.39 -0.02 2.27 16 45 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 46 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 47 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -82.22 392.11 4.69 -77.53 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.95 Total: 25.71 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 9.04 Total: 3.14 kcal Atomic # 7 Polarization: -144.34 SS G_CDS: -7.18 Total: -151.52 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -82.22 4.69 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597284122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 306.732 kcal (2) G-P(sol) polarization free energy of solvation -82.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 229.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds