Wall clock time and date at job start Wed Apr 1 2020 02:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.50443 * 2 1 4 4 C 1.53039 * 109.50422 * 239.92294 * 2 1 3 5 5 N 1.46843 * 109.52404 * 180.87663 * 4 2 1 6 6 C 1.46900 * 111.00386 * 185.83585 * 5 4 2 7 7 C 1.50700 * 109.47270 * 169.99896 * 6 5 4 8 8 O 1.21283 * 119.99939 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99552 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99586 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47006 * 90.00023 * 10 9 7 12 12 H 1.07991 * 120.00449 * 359.72165 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.46497 * 120.00280 * 0.02562 * 9 7 6 20 20 C 1.52999 * 109.47309 * 269.99886 * 19 9 7 21 21 C 1.47198 * 109.47237 * 180.02562 * 20 19 9 22 22 N 8.53642 * 108.96424 * 232.27606 * 2 1 3 23 23 C 1.46854 * 111.19874 * 61.74056 * 5 4 2 24 24 C 1.53039 * 109.52300 * 298.26231 * 23 5 4 25 25 H 1.08999 * 109.53218 * 179.13744 * 24 23 5 26 26 C 1.53006 * 109.49952 * 299.23260 * 24 23 5 27 27 C 1.53114 * 109.28251 * 59.17468 * 24 23 5 28 28 F 1.39900 * 109.52527 * 182.44253 * 27 24 23 29 29 F 1.39900 * 109.52022 * 62.24881 * 27 24 23 30 30 H 1.08999 * 109.46913 * 180.08112 * 1 2 3 31 31 H 1.08997 * 109.47079 * 300.07865 * 1 2 3 32 32 H 1.08994 * 109.47207 * 60.08035 * 1 2 3 33 33 H 1.09002 * 109.46049 * 60.86262 * 4 2 1 34 34 H 1.08994 * 109.45228 * 300.88590 * 4 2 1 35 35 H 1.09007 * 109.46144 * 50.00116 * 6 5 4 36 36 H 1.09002 * 109.47197 * 290.00509 * 6 5 4 37 37 H 1.08998 * 109.47049 * 329.99451 * 10 9 7 38 38 H 1.09001 * 109.46896 * 209.99722 * 10 9 7 39 39 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 40 40 H 1.08993 * 109.47146 * 30.00231 * 19 9 7 41 41 H 1.09008 * 109.47223 * 150.00153 * 19 9 7 42 42 H 1.09003 * 109.47121 * 300.00263 * 20 19 9 43 43 H 1.09001 * 109.47048 * 60.00241 * 20 19 9 44 44 H 1.09002 * 109.45802 * 58.27180 * 23 5 4 45 45 H 1.08998 * 109.46424 * 178.23886 * 23 5 4 46 46 H 1.09001 * 109.46862 * 179.80516 * 26 24 23 47 47 H 1.08998 * 109.47055 * 299.80534 * 26 24 23 48 48 H 1.08999 * 109.47062 * 59.80724 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 -1.2483 5 7 3.5092 -0.7416 -1.2382 6 6 4.0373 -1.3049 -2.4879 7 6 5.5270 -1.0851 -2.5481 8 8 6.0931 -0.5156 -1.6391 9 7 6.2300 -1.5213 -3.6119 10 6 7.6783 -1.3081 -3.6702 11 6 8.3844 -2.4811 -3.0407 12 1 7.8117 -3.3011 -2.6335 13 6 9.7617 -2.5050 -2.9799 14 7 10.4593 -1.5066 -3.4762 15 14 10.6368 -3.9555 -2.1927 16 1 9.6326 -4.9392 -1.7142 17 1 11.5245 -4.6004 -3.1933 18 1 11.4491 -3.4795 -1.0443 19 6 5.5460 -2.2087 -4.7101 20 6 5.5207 -3.7131 -4.4330 21 6 4.8340 -4.4038 -5.5367 22 7 4.3041 -4.9396 -6.3855 23 6 4.0230 -1.4729 -0.0729 24 6 3.5712 -0.7723 1.2105 25 1 3.9396 -1.3235 2.0756 26 6 4.1279 0.6526 1.2377 27 6 2.0413 -0.7242 1.2485 28 9 1.6234 -0.0357 2.3924 29 9 1.5331 -2.0274 1.2740 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8906 33 1 1.6905 -0.2014 -2.1390 34 1 1.6649 -1.7459 -1.2548 35 1 3.5628 -0.8130 -3.3371 36 1 3.8260 -2.3737 -2.5225 37 1 7.9335 -0.3971 -3.1288 38 1 7.9898 -1.2120 -4.7103 39 1 11.4282 -1.5236 -3.4338 40 1 4.5247 -1.8369 -4.7913 41 1 6.0767 -2.0200 -5.6434 42 1 6.5422 -4.0849 -4.3518 43 1 4.9901 -3.9018 -3.4998 44 1 3.6375 -2.4924 -0.0852 45 1 5.1121 -1.4961 -0.1100 46 1 3.8029 1.1522 2.1503 47 1 5.2170 0.6177 1.2106 48 1 3.7603 1.2029 0.3716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599512550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:42 Heat of formation + Delta-G solvation = -124.089928 kcal Electronic energy + Delta-G solvation = -31812.150081 eV Core-core repulsion = 27344.148880 eV Total energy + Delta-G solvation = -4468.001201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.00419 -47.97354 -41.03766 -39.47956 -37.92083 -36.60155 -34.98807 -34.57194 -34.42277 -32.05852 -30.04303 -28.16889 -27.79410 -27.10245 -25.10763 -24.86316 -23.51270 -22.90218 -20.31179 -19.82538 -18.94828 -18.36568 -18.13497 -17.92307 -17.56332 -17.40581 -17.11379 -16.52867 -16.27793 -15.82247 -15.69392 -15.45397 -15.37352 -14.83256 -14.67872 -14.42448 -14.31089 -14.29563 -13.99160 -13.93059 -13.81046 -13.67128 -13.50014 -13.36100 -13.25281 -13.04354 -12.94517 -12.78304 -12.72068 -12.68713 -12.49990 -12.48781 -12.18645 -12.06609 -11.98915 -11.79464 -11.65400 -11.50026 -11.09255 -10.53618 -10.35541 -9.40263 -9.21945 -8.11744 -6.22906 1.42776 1.46451 1.55052 1.72860 1.87299 2.03540 2.23571 2.47334 2.72086 2.89581 3.07469 3.19985 3.21178 3.31733 3.47573 3.76418 3.91642 4.03722 4.11240 4.19245 4.23659 4.31373 4.37720 4.40363 4.48906 4.50893 4.61176 4.64672 4.74091 4.78749 4.88208 4.90876 4.94397 5.05102 5.09894 5.11018 5.14645 5.20015 5.28628 5.41986 5.45864 5.70669 5.88457 5.97440 6.09289 6.18960 6.63370 6.84909 6.91617 7.43022 7.65153 8.95464 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003466 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.002474 B = 8076.128146 C = 9496.086927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 H 0.112 0.888 4 C 0.062 3.938 5 N -0.531 5.531 6 C 0.043 3.957 7 C 0.502 3.498 8 O -0.564 6.564 9 N -0.601 5.601 10 C 0.261 3.739 11 C -0.525 4.525 12 H 0.068 0.932 13 C 0.010 3.990 14 N -0.930 5.930 15 Si 0.952 3.048 16 H -0.260 1.260 17 H -0.280 1.280 18 H -0.291 1.291 19 C 0.119 3.881 20 C -0.043 4.043 21 C 0.247 3.753 22 N -0.490 5.490 23 C 0.060 3.940 24 C -0.121 4.121 25 H 0.089 0.911 26 C -0.127 4.127 27 C 0.288 3.712 28 F -0.207 7.207 29 F -0.208 7.208 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.087 0.913 37 H 0.000 1.000 38 H 0.024 0.976 39 H 0.262 0.738 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.126 0.874 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.377 1.642 4.149 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 H 0.130 0.870 4 C -0.066 4.066 5 N -0.256 5.256 6 C -0.087 4.087 7 C 0.291 3.709 8 O -0.442 6.442 9 N -0.332 5.332 10 C 0.140 3.860 11 C -0.564 4.564 12 H 0.086 0.914 13 C -0.189 4.189 14 N -0.571 5.571 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.206 1.206 18 H -0.218 1.218 19 C -0.006 4.006 20 C -0.084 4.084 21 C -0.070 4.070 22 N -0.168 5.168 23 C -0.068 4.068 24 C -0.141 4.141 25 H 0.107 0.893 26 C -0.185 4.185 27 C 0.252 3.748 28 F -0.188 7.188 29 F -0.189 7.189 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.104 0.896 37 H 0.018 0.982 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.144 0.856 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.555 1.671 3.390 20.900 hybrid contribution 1.302 -1.355 0.999 2.128 sum -19.254 0.316 4.389 19.750 Atomic orbital electron populations 1.21788 0.91655 1.03080 1.03957 1.22196 0.98498 1.01779 0.91595 0.86993 1.22242 0.85689 1.00206 0.98417 1.61489 1.08093 1.54770 1.01224 1.22115 0.90943 1.01206 0.94453 1.21061 0.90130 0.78310 0.81432 1.90651 1.72630 1.43124 1.37792 1.48101 1.08768 1.56372 1.19996 1.18770 0.75665 0.95503 0.96068 1.21806 0.91432 1.05343 1.37780 0.91409 1.25705 0.98616 0.98426 0.96114 1.70052 1.06828 1.32877 1.47320 0.85600 0.78782 0.79856 0.77986 1.18360 1.20572 1.21794 1.21525 0.99590 0.89074 0.90377 1.19899 1.01606 0.94822 0.92091 1.29154 0.91901 0.92442 0.93494 1.81198 1.12173 1.10983 1.12444 1.22115 1.01762 0.94143 0.88777 1.22088 0.91477 1.00745 0.99747 0.89290 1.21596 1.01023 0.93490 1.02359 1.21402 0.93265 0.75451 0.84642 1.92957 1.91847 1.79734 1.54266 1.92949 1.89121 1.39916 1.96913 0.92140 0.92032 0.89049 0.86608 0.93250 0.84626 0.89563 0.98235 0.95766 0.92907 0.86729 0.89534 0.86883 0.85587 0.94097 0.89969 0.92081 0.92929 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.96 71.98 0.64 -1.22 16 2 C -0.12 -1.99 2.17 -10.74 -0.02 -2.01 16 3 H 0.11 1.85 6.59 -2.38 -0.02 1.83 16 4 C 0.06 0.93 4.63 86.33 0.40 1.33 16 5 N -0.53 -11.46 3.68 -900.90 -3.31 -14.78 16 6 C 0.04 0.86 4.00 85.56 0.34 1.20 16 7 C 0.50 16.20 7.35 87.66 0.64 16.84 16 8 O -0.56 -24.14 13.90 -3.04 -0.04 -24.18 16 9 N -0.60 -19.61 2.46 -826.15 -2.03 -21.64 16 10 C 0.26 11.99 5.20 85.63 0.45 12.43 16 11 C -0.52 -26.00 8.92 25.60 0.23 -25.77 16 12 H 0.07 3.18 7.43 -2.92 -0.02 3.16 16 13 C 0.01 0.53 5.46 84.66 0.46 0.99 16 14 N -0.93 -52.87 13.29 21.45 0.28 -52.58 16 15 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 19 C 0.12 2.56 5.21 86.38 0.45 3.01 16 20 C -0.04 -0.86 6.03 28.79 0.17 -0.69 16 21 C 0.25 5.53 15.43 89.45 1.38 6.91 16 22 N -0.49 -13.60 18.53 19.99 0.37 -13.22 16 23 C 0.06 1.52 4.43 86.32 0.38 1.90 16 24 C -0.12 -2.86 2.81 -10.74 -0.03 -2.89 16 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 26 C -0.13 -3.10 8.61 71.98 0.62 -2.48 16 27 C 0.29 6.17 1.30 30.67 0.04 6.21 16 28 F -0.21 -4.85 16.06 44.97 0.72 -4.13 16 29 F -0.21 -4.85 15.62 44.97 0.70 -4.15 16 30 H 0.06 0.81 7.75 -2.39 -0.02 0.79 16 31 H 0.06 0.84 7.88 -2.39 -0.02 0.82 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 1.19 8.02 -2.39 -0.02 1.17 16 34 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 35 H 0.14 1.81 7.25 -2.38 -0.02 1.79 16 36 H 0.09 1.34 7.17 -2.39 -0.02 1.32 16 37 H 0.00 -0.03 7.42 -2.39 -0.02 -0.04 16 38 H 0.02 1.15 7.89 -2.39 -0.02 1.13 16 39 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.11 1.54 6.44 -2.39 -0.02 1.53 16 41 H 0.09 1.93 7.89 -2.38 -0.02 1.91 16 42 H 0.11 2.81 7.27 -2.39 -0.02 2.80 16 43 H 0.13 2.00 7.22 -2.39 -0.02 1.99 16 44 H 0.04 0.97 7.87 -2.39 -0.02 0.95 16 45 H 0.08 2.70 5.78 -2.39 -0.01 2.69 16 46 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 47 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.07 1.80 6.01 -2.39 -0.01 1.78 16 Total: -1.00 -69.29 389.12 5.85 -63.44 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.97 Total: 11.66 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.16 Total: 15.78 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -4.69 Total: -102.23 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.04 Total: -24.18 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 1.42 Total: -8.28 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -69.29 5.85 -63.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599512550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.652 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds