Wall clock time and date at job start Wed Apr 1 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46780 * 2 1 4 4 C 1.34237 * 116.99513 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99421 * 180.02562 * 4 3 2 7 7 O 1.42904 * 109.46909 * 180.02562 * 6 4 3 8 8 C 1.42899 * 113.99668 * 180.02562 * 7 6 4 9 9 C 1.53010 * 109.46548 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46883 * 65.00172 * 9 8 7 11 11 C 1.34780 * 119.99730 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00072 * 354.91290 * 11 10 9 13 13 N 1.34774 * 120.00058 * 175.19230 * 11 10 9 14 14 C 1.47071 * 120.88598 * 184.43706 * 13 11 10 15 15 C 1.53694 * 108.28352 * 128.75074 * 14 13 11 16 16 N 1.46906 * 109.25391 * 54.08221 * 15 14 13 17 17 C 1.46894 * 111.00106 * 172.60736 * 16 15 14 18 18 C 1.50704 * 109.47344 * 294.30735 * 17 16 15 19 19 H 1.08004 * 119.99584 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00097 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99830 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46819 * 60.00149 * 22 20 18 24 24 H 1.48498 * 109.47150 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46916 * 300.00115 * 22 20 18 26 26 C 1.46895 * 111.26785 * 296.76362 * 16 15 14 27 27 C 1.47087 * 120.87900 * 4.71322 * 13 11 10 28 28 H 1.08989 * 109.47283 * 59.99749 * 1 2 3 29 29 H 1.09008 * 109.46804 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47063 * 299.99343 * 1 2 3 31 31 H 1.09002 * 109.47063 * 240.00657 * 2 1 3 32 32 H 1.09000 * 109.47569 * 120.00673 * 2 1 3 33 33 H 1.08998 * 109.47238 * 60.00695 * 6 4 3 34 34 H 1.09002 * 109.46974 * 299.99947 * 6 4 3 35 35 H 1.08996 * 109.47552 * 59.99722 * 8 7 6 36 36 H 1.09001 * 109.47265 * 299.99199 * 8 7 6 37 37 H 1.08991 * 109.47144 * 304.99358 * 9 8 7 38 38 H 1.09007 * 109.46718 * 184.99546 * 9 8 7 39 39 H 0.96998 * 120.00171 * 359.97438 * 10 9 8 40 40 H 1.09008 * 109.63098 * 248.52805 * 14 13 11 41 41 H 1.09005 * 109.62925 * 9.10050 * 14 13 11 42 42 H 1.08996 * 109.64595 * 294.08424 * 15 14 13 43 43 H 1.09001 * 109.42378 * 173.94728 * 15 14 13 44 44 H 1.09004 * 109.46810 * 54.30037 * 17 16 15 45 45 H 1.08995 * 109.47280 * 174.30069 * 17 16 15 46 46 H 0.97000 * 119.99582 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.49279 * 303.13650 * 26 16 15 48 48 H 1.09009 * 109.48884 * 183.06454 * 26 16 15 49 49 H 1.08995 * 109.62677 * 350.89612 * 27 13 11 50 50 H 1.08993 * 109.62850 * 111.48213 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 8 5.3477 2.8628 0.0010 8 6 5.9963 4.1361 0.0022 9 6 7.5132 3.9356 0.0026 10 7 7.9213 3.2938 -1.2495 11 6 9.2215 3.0177 -1.4727 12 8 10.0658 3.3834 -0.6779 13 7 9.5863 2.3409 -2.5796 14 6 10.9861 1.9446 -2.7952 15 6 11.0172 0.4434 -3.1229 16 7 10.1156 0.1751 -4.2513 17 6 10.2461 -1.2140 -4.7107 18 6 11.6234 -1.4261 -5.2845 19 1 12.3309 -0.6103 -5.3060 20 6 11.9803 -2.6615 -5.7818 21 7 11.1190 -3.6550 -5.7551 22 14 13.6874 -2.9242 -6.4936 23 1 14.7067 -2.6497 -5.4492 24 1 13.8193 -4.3285 -6.9580 25 1 13.8927 -2.0029 -7.6400 26 6 8.7223 0.4867 -3.9057 27 6 8.5961 1.9844 -3.6071 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5844 3.4693 0.8912 34 1 3.5850 3.4699 -0.8888 35 1 5.7034 4.6923 0.8926 36 1 5.7035 4.6938 -0.8873 37 1 7.7959 3.3032 0.8441 38 1 8.0075 4.9029 0.0930 39 1 7.2558 3.0677 -1.9180 40 1 11.4038 2.5128 -3.6264 41 1 11.5641 2.1353 -1.8908 42 1 10.6921 -0.1283 -2.2537 43 1 12.0326 0.1520 -3.3915 44 1 10.0949 -1.8906 -3.8696 45 1 9.4981 -1.4149 -5.4776 46 1 11.3700 -4.5240 -6.1053 47 1 8.4291 -0.0857 -3.0256 48 1 8.0732 0.2266 -4.7420 49 1 7.5931 2.2013 -3.2398 50 1 8.7883 2.5561 -4.5149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601613639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:35 Heat of formation + Delta-G solvation = -139.062950 kcal Electronic energy + Delta-G solvation = -30222.691170 eV Core-core repulsion = 25865.128205 eV Total energy + Delta-G solvation = -4357.562965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84423 -40.17507 -38.61331 -37.54983 -36.84160 -34.80589 -34.31510 -32.37103 -32.27395 -30.91678 -30.06993 -28.47703 -27.66819 -25.40047 -23.70394 -23.46814 -22.71183 -22.03022 -21.58150 -20.67780 -19.30150 -18.30687 -17.82906 -17.42806 -17.26102 -16.72084 -16.53795 -16.29128 -15.79173 -15.39012 -14.91807 -14.59354 -14.51153 -14.36516 -14.03529 -13.87438 -13.84449 -13.54527 -13.39298 -13.25519 -13.04904 -12.78540 -12.43975 -12.26901 -12.13683 -12.04437 -11.94545 -11.75088 -11.23509 -11.07724 -10.95629 -10.79216 -10.73834 -10.70441 -10.55776 -10.46339 -10.34243 -9.94138 -9.79851 -9.24573 -9.10999 -8.43983 -8.25596 -7.26464 -6.02075 -4.03834 1.80922 1.83657 2.77177 3.34135 3.35117 3.38892 3.40190 3.41940 3.97894 4.19066 4.42605 4.46753 4.48071 4.54018 4.56096 4.60926 4.71384 4.81564 4.84662 4.89799 5.21748 5.28590 5.32441 5.32978 5.35704 5.43533 5.48605 5.51180 5.61014 5.72799 5.89547 5.99895 6.01194 6.10280 6.28571 6.38741 6.48325 6.51722 6.62884 6.74929 7.12113 7.27474 7.34598 7.38419 7.78511 8.05406 8.07689 8.17993 8.52670 8.74070 9.03258 9.60432 11.08761 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010212 B = 0.002287 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.106013 B =12240.826556 C =14635.716715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.458 3.542 5 O -0.478 6.478 6 C 0.072 3.928 7 O -0.363 6.363 8 C 0.050 3.950 9 C 0.143 3.857 10 N -0.747 5.747 11 C 0.709 3.291 12 O -0.599 6.599 13 N -0.625 5.625 14 C 0.134 3.866 15 C 0.050 3.950 16 N -0.535 5.535 17 C 0.194 3.806 18 C -0.509 4.509 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.040 3.960 27 C 0.120 3.880 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.398 0.602 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.025 0.975 43 H 0.097 0.903 44 H -0.009 1.009 45 H 0.031 0.969 46 H 0.262 0.738 47 H 0.028 0.972 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.806 16.502 11.971 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.278 6.278 4 C 0.298 3.702 5 O -0.363 6.363 6 C -0.005 4.005 7 O -0.283 6.283 8 C -0.026 4.026 9 C 0.018 3.982 10 N -0.406 5.406 11 C 0.410 3.590 12 O -0.478 6.478 13 N -0.362 5.362 14 C 0.011 3.989 15 C -0.079 4.079 16 N -0.260 5.260 17 C 0.069 3.931 18 C -0.547 4.547 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.089 4.089 27 C -0.004 4.004 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.235 0.765 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.115 0.885 44 H 0.009 0.991 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.761 16.354 12.134 29.081 hybrid contribution 0.026 -0.984 -0.125 0.993 sum -20.734 15.369 12.009 28.467 Atomic orbital electron populations 1.21816 0.92331 1.03246 1.03525 1.23097 0.95408 0.79487 1.03103 1.86431 1.23782 1.33170 1.84460 1.23175 0.80990 0.92180 0.73846 1.90767 1.60187 1.42604 1.42755 1.21647 0.83306 0.91309 1.04257 1.88061 1.15542 1.29049 1.95605 1.22942 0.92779 0.85036 1.01849 1.21158 0.90838 0.98953 0.87205 1.45146 1.07100 1.67014 1.21321 1.15794 0.82544 0.78851 0.81799 1.90879 1.50155 1.58804 1.47984 1.47392 1.10350 1.58342 1.20067 1.21826 0.80070 0.95471 1.01550 1.22457 0.99872 0.93326 0.92252 1.62080 1.02885 1.28436 1.32593 1.19717 0.97978 0.80838 0.94564 1.21111 0.98242 0.95965 1.39420 0.91807 1.24999 0.97537 0.95962 0.96132 1.69954 1.34989 1.02167 1.46696 0.86542 0.84262 0.76982 0.79513 1.20225 1.21411 1.20152 1.22375 0.93030 0.93879 0.99661 1.21750 0.90583 0.96860 0.91205 0.91366 0.89969 0.91461 0.90812 0.90980 0.88775 0.88733 0.90865 0.91886 0.90708 0.89673 0.76536 0.91180 0.89395 0.95700 0.88517 0.99118 0.95112 0.92857 0.95393 0.90213 0.91285 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.00 10.22 -39.28 -0.40 -3.41 16 4 C 0.46 4.51 8.03 36.01 0.29 4.80 16 5 O -0.48 -6.89 16.25 -25.47 -0.41 -7.31 16 6 C 0.07 0.46 6.53 36.01 0.24 0.69 16 7 O -0.36 -3.38 9.82 -55.18 -0.54 -3.92 16 8 C 0.05 0.32 6.07 37.16 0.23 0.54 16 9 C 0.14 1.39 6.07 -4.04 -0.02 1.37 16 10 N -0.75 -9.24 5.42 -65.22 -0.35 -9.59 16 11 C 0.71 11.63 8.31 -86.92 -0.72 10.91 16 12 O -0.60 -11.72 15.83 5.29 0.08 -11.64 16 13 N -0.62 -10.21 3.00 -177.91 -0.53 -10.74 16 14 C 0.13 2.33 6.61 -3.37 -0.02 2.31 16 15 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 16 N -0.53 -11.53 4.62 -235.47 -1.09 -12.62 16 17 C 0.19 5.08 4.72 -4.98 -0.02 5.05 16 18 C -0.51 -14.25 8.41 -34.44 -0.29 -14.54 16 19 H 0.06 1.75 7.13 -52.48 -0.37 1.38 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 27 C 0.12 1.72 6.59 -3.60 -0.02 1.70 16 28 H 0.07 0.29 8.14 -51.94 -0.42 -0.13 16 29 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.28 5.97 -40.82 -0.24 4.04 16 40 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 41 H 0.09 1.55 7.09 -51.93 -0.37 1.18 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 2.06 6.67 -51.93 -0.35 1.71 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 47 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.08 1.36 7.99 -51.92 -0.41 0.95 16 49 H 0.07 0.80 5.63 -51.93 -0.29 0.50 16 50 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 410.67 15.07 6.19 6.19 Total: -1.00 -37.04 410.67 -9.58 -46.62 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -8.35 Total: -0.54 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 0.12 Total: 16.38 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -1.24 Total: -59.09 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.27 Total: -26.27 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.04 -9.58 -46.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.446 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds