Wall clock time and date at job start Wed Apr 1 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47055 * 20.56735 * 3 2 1 5 5 C 1.52998 * 109.46973 * 140.56850 * 3 2 1 6 6 C 1.53007 * 109.47109 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47080 * 300.00063 * 6 5 3 8 8 H 1.08998 * 109.47104 * 299.99708 * 7 6 5 9 9 N 1.46901 * 109.47006 * 180.02562 * 7 6 5 10 10 C 1.46895 * 110.99930 * 155.00029 * 9 7 6 11 11 C 1.53000 * 109.46898 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46974 * 304.99917 * 11 10 9 13 13 O 1.42899 * 109.47395 * 65.00245 * 11 10 9 14 14 C 1.53007 * 109.47099 * 185.00100 * 11 10 9 15 15 O 1.42898 * 109.47066 * 174.99850 * 14 11 10 16 16 C 1.35677 * 116.99857 * 179.97438 * 15 14 11 17 17 C 1.39310 * 119.81742 * 359.72985 * 16 15 14 18 18 C 1.36435 * 120.18530 * 179.76371 * 17 16 15 19 19 C 1.40836 * 119.80963 * 0.50589 * 18 17 16 20 20 C 1.41214 * 120.17690 * 179.72524 * 19 18 17 21 21 H 1.07999 * 120.00046 * 204.55928 * 20 19 18 22 22 C 1.39890 * 120.00197 * 24.56165 * 20 19 18 23 23 N 1.30876 * 119.99923 * 17.93662 * 22 20 19 24 24 Si 1.86801 * 119.99834 * 197.93115 * 22 20 19 25 25 H 1.48499 * 109.47314 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46785 * 120.00334 * 24 22 20 27 27 H 1.48495 * 109.47094 * 240.00131 * 24 22 20 28 28 C 1.40828 * 119.64025 * 359.74490 * 19 18 17 29 29 C 1.36435 * 119.81657 * 359.97438 * 28 19 18 30 30 C 1.52995 * 109.46856 * 59.99901 * 7 6 5 31 31 C 1.52996 * 109.47729 * 299.99949 * 30 7 6 32 32 H 4.18741 * 15.03927 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47324 * 60.00049 * 5 3 2 34 34 H 1.09000 * 109.47543 * 300.00083 * 5 3 2 35 35 H 1.08999 * 109.46597 * 60.00327 * 6 5 3 36 36 H 1.08999 * 109.46829 * 180.02562 * 6 5 3 37 37 H 1.00905 * 110.99808 * 278.96075 * 9 7 6 38 38 H 1.08999 * 109.47102 * 299.99698 * 10 9 7 39 39 H 1.09000 * 109.46772 * 60.00125 * 10 9 7 40 40 H 0.96701 * 113.99686 * 59.99375 * 13 11 10 41 41 H 1.09000 * 109.46875 * 295.00053 * 14 11 10 42 42 H 1.08997 * 109.46555 * 55.00046 * 14 11 10 43 43 H 1.07996 * 119.90651 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.09598 * 180.25478 * 18 17 16 45 45 H 0.97001 * 119.99830 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.09338 * 180.02562 * 28 19 18 47 47 H 1.08001 * 119.91326 * 179.97438 * 29 28 19 48 48 H 1.09008 * 109.47400 * 60.00095 * 30 7 6 49 49 H 1.09000 * 109.47198 * 179.97438 * 30 7 6 50 50 H 1.08997 * 109.47525 * 180.02562 * 31 30 7 51 51 H 1.09008 * 109.46799 * 300.00514 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9613 -0.3610 5 6 3.1554 1.1150 -0.9162 6 6 4.6855 1.1162 -0.9157 7 6 5.1949 1.3531 0.5074 8 1 4.8307 2.3151 0.8682 9 7 6.6639 1.3548 0.5077 10 6 7.1891 2.1308 1.6390 11 6 8.7186 2.1089 1.6060 12 1 9.0669 1.0762 1.5883 13 8 9.1796 2.7873 0.4358 14 6 9.2657 2.8104 2.8509 15 8 10.6892 2.6886 2.8794 16 6 11.3355 3.2608 3.9262 17 6 10.6080 3.9332 4.9057 18 6 11.2498 4.5072 5.9640 19 6 12.6527 4.4277 6.0589 20 6 13.3254 5.0240 7.1479 21 1 14.3596 5.3187 7.0479 22 6 12.6523 5.2331 8.3562 23 7 11.5452 4.5828 8.6096 24 14 13.3337 6.4406 9.6081 25 1 14.5867 7.0418 9.0849 26 1 12.3364 7.5127 9.8555 27 1 13.6194 5.7275 10.8790 28 6 13.3810 3.7507 5.0616 29 6 12.7234 3.1771 4.0128 30 6 4.6853 0.2387 1.4235 31 6 3.1554 0.2375 1.4231 32 1 -1.0501 -0.0011 0.0001 33 1 2.7917 2.0770 -0.5552 34 1 2.7922 0.9465 -1.9300 35 1 5.0495 0.1542 -1.2766 36 1 5.0484 1.9104 -1.5681 37 1 7.0265 0.4132 0.5156 38 1 6.8385 3.1604 1.5673 39 1 6.8399 1.6922 2.5737 40 1 8.9063 3.7134 0.3848 41 1 8.9917 3.8650 2.8236 42 1 8.8435 2.3483 3.7432 43 1 9.5326 3.9965 4.8293 44 1 10.6840 5.0246 6.7247 45 1 11.0787 4.7275 9.4477 46 1 14.4570 3.6849 5.1273 47 1 13.2804 2.6579 3.2469 48 1 5.0495 -0.7233 1.0627 49 1 5.0486 0.4072 2.4373 50 1 2.7924 -0.5561 2.0761 51 1 2.7912 1.1996 1.7839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872252964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:59 Heat of formation + Delta-G solvation = -37.614966 kcal Electronic energy + Delta-G solvation = -28346.106683 eV Core-core repulsion = 24403.792096 eV Total energy + Delta-G solvation = -3942.314587 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.69145 -38.97251 -37.59403 -36.16509 -35.33763 -33.34612 -32.94562 -31.21817 -30.70737 -29.65202 -29.26869 -28.27933 -25.33371 -24.39489 -23.08699 -22.51381 -22.04451 -20.96742 -20.43428 -20.28523 -18.51017 -17.37514 -17.14223 -16.69764 -16.23999 -16.02868 -15.26900 -15.19500 -15.05364 -14.76429 -14.45992 -14.34156 -13.96964 -13.94458 -13.60485 -13.47911 -13.03626 -12.70658 -12.64189 -12.41885 -12.34543 -12.02585 -11.97355 -11.75212 -11.58527 -11.46931 -11.39536 -11.21240 -11.14317 -11.02083 -10.93929 -10.79392 -10.57592 -10.41186 -10.30612 -9.98932 -9.85019 -9.77456 -9.37469 -9.02540 -8.61358 -7.66525 -7.02171 -6.74252 -4.26144 2.44668 2.47181 2.74832 2.95590 3.07566 3.12982 3.19691 3.49640 3.89828 3.94201 4.19878 4.27293 4.38671 4.48088 4.60671 4.69381 4.75741 4.85323 4.92488 4.96793 5.02044 5.06289 5.09108 5.20511 5.26204 5.34701 5.38031 5.48951 5.58098 5.63296 5.64783 5.67294 5.69944 5.72917 5.76780 5.95618 5.98665 6.04265 6.09187 6.27889 6.68922 6.74886 6.88454 7.05811 7.09284 7.25111 7.27063 7.40234 7.55135 7.76820 7.89621 7.99543 8.14659 8.43916 8.64389 8.89280 8.98402 10.20544 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.001618 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.138775 B =17306.084062 C =18504.494530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.179 4.179 3 C 0.019 3.981 4 H 0.092 0.908 5 C -0.109 4.109 6 C -0.105 4.105 7 C 0.086 3.914 8 H 0.078 0.922 9 N -0.674 5.674 10 C 0.030 3.970 11 C 0.115 3.885 12 H 0.103 0.897 13 O -0.541 6.541 14 C 0.038 3.962 15 O -0.318 6.318 16 C -0.010 4.010 17 C -0.175 4.175 18 C -0.134 4.134 19 C 0.086 3.914 20 C -0.463 4.463 21 H 0.078 0.922 22 C 0.075 3.925 23 N -0.801 5.801 24 Si 0.906 3.094 25 H -0.260 1.260 26 H -0.273 1.273 27 H -0.275 1.275 28 C -0.195 4.195 29 C -0.112 4.112 30 C -0.151 4.151 31 C -0.105 4.105 32 H 0.216 0.784 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.343 0.657 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.371 0.629 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.278 0.722 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 -6.928 -13.980 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.179 4.179 3 C 0.001 3.999 4 H 0.110 0.890 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.024 4.024 8 H 0.096 0.904 9 N -0.303 5.303 10 C -0.100 4.100 11 C 0.055 3.945 12 H 0.120 0.880 13 O -0.345 6.345 14 C -0.039 4.039 15 O -0.234 6.234 16 C -0.053 4.053 17 C -0.194 4.194 18 C -0.154 4.154 19 C 0.084 3.916 20 C -0.493 4.493 21 H 0.096 0.904 22 C -0.142 4.142 23 N -0.427 5.427 24 Si 0.731 3.269 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.201 1.201 28 C -0.215 4.215 29 C -0.131 4.131 30 C -0.190 4.190 31 C -0.143 4.143 32 H 0.233 0.767 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.162 0.838 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.217 0.783 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.731 -7.112 -14.513 24.740 hybrid contribution -0.780 0.455 1.954 2.153 sum -19.512 -6.657 -12.558 24.140 Atomic orbital electron populations 1.24920 0.95956 1.01229 1.00892 1.23136 0.94352 1.00160 1.00273 1.18392 0.84155 1.00472 0.96883 0.89049 1.21560 0.95790 0.98091 0.99279 1.21493 0.93569 1.02890 0.96371 1.21645 0.87259 0.98241 0.95253 0.90413 1.60455 1.06274 1.19359 1.44258 1.22604 0.95267 0.99499 0.92583 1.21838 0.90765 0.97674 0.84189 0.87965 1.86626 1.78030 1.27843 1.41994 1.23116 0.82797 0.99977 0.98006 1.85864 1.17682 1.74883 1.44934 1.18604 0.91653 1.04805 0.90266 1.20591 0.97468 1.04142 0.97170 1.20931 0.95176 1.02207 0.97051 1.17606 0.91897 0.90078 0.92006 1.19504 0.98837 1.35361 0.95554 0.90435 1.25875 0.94387 0.94732 0.99187 1.69848 1.15593 1.33367 1.23918 0.86295 0.80117 0.80676 0.79823 1.18404 1.19817 1.20081 1.20605 0.98189 1.04780 0.97944 1.19620 0.90680 1.03454 0.99311 1.22315 0.95765 1.00154 1.00759 1.21473 0.95188 1.02589 0.95088 0.76727 0.91506 0.91322 0.91629 0.90638 0.83840 0.90361 0.93993 0.78268 0.92884 0.92531 0.88955 0.86164 0.91083 0.88187 0.88460 0.91349 0.91532 0.91541 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.18 -1.46 12.56 -37.12 -0.47 -1.93 16 3 C 0.02 0.13 2.57 -93.41 -0.24 -0.11 16 4 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.11 -0.69 5.16 -26.73 -0.14 -0.83 16 6 C -0.11 -0.70 5.53 -26.73 -0.15 -0.85 16 7 C 0.09 0.62 2.47 -67.71 -0.17 0.45 16 8 H 0.08 0.60 7.80 -51.93 -0.40 0.20 16 9 N -0.67 -5.78 6.20 -106.73 -0.66 -6.45 16 10 C 0.03 0.28 5.12 -3.83 -0.02 0.26 16 11 C 0.12 1.42 3.43 -26.73 -0.09 1.33 16 12 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 13 O -0.54 -7.34 13.25 -40.08 -0.53 -7.87 16 14 C 0.04 0.59 4.36 37.16 0.16 0.75 16 15 O -0.32 -6.50 10.09 -23.59 -0.24 -6.73 16 16 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 17 C -0.17 -4.08 8.96 -39.83 -0.36 -4.44 16 18 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 19 C 0.09 2.31 5.57 -106.81 -0.60 1.72 16 20 C -0.46 -12.28 9.04 -37.83 -0.34 -12.62 16 21 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 22 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 23 N -0.80 -20.68 10.96 55.54 0.61 -20.07 16 24 Si 0.91 18.64 29.60 -169.99 -5.03 13.61 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 27 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 28 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 29 C -0.11 -2.63 9.92 -39.83 -0.40 -3.03 16 30 C -0.15 -0.99 5.17 -26.74 -0.14 -1.13 16 31 C -0.11 -0.70 5.16 -26.73 -0.14 -0.83 16 32 H 0.22 0.87 7.80 -54.09 -0.42 0.45 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.34 2.83 8.47 -39.29 -0.33 2.49 16 38 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.04 0.37 7.44 -51.93 -0.39 -0.01 16 40 H 0.37 3.90 9.05 45.56 0.41 4.31 16 41 H 0.05 0.78 7.63 -51.93 -0.40 0.38 16 42 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 43 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 44 H 0.12 3.20 6.16 -52.49 -0.32 2.87 16 45 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 46 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 47 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 48 H 0.07 0.42 8.13 -51.92 -0.42 0.00 16 49 H 0.07 0.47 7.45 -51.93 -0.39 0.08 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 415.28 15.07 6.26 6.26 Total: -1.00 -30.05 415.28 -10.75 -40.81 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.58 Total: 10.45 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -3.58 Total: -30.00 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.77 Total: -14.61 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.05 -10.75 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872252964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds