Wall clock time and date at job start Wed Apr 1 2020 01:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47055 * 20.56735 * 3 2 1 5 5 C 1.52998 * 109.46973 * 140.56850 * 3 2 1 6 6 C 1.53007 * 109.47109 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47080 * 300.00063 * 6 5 3 8 8 H 1.08998 * 109.47104 * 299.99708 * 7 6 5 9 9 N 1.46901 * 109.47006 * 180.02562 * 7 6 5 10 10 C 1.46895 * 110.99930 * 155.00029 * 9 7 6 11 11 C 1.53000 * 109.46898 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46974 * 304.99917 * 11 10 9 13 13 O 1.42899 * 109.47395 * 65.00245 * 11 10 9 14 14 C 1.53007 * 109.47099 * 185.00100 * 11 10 9 15 15 O 1.42898 * 109.47066 * 174.99850 * 14 11 10 16 16 C 1.35677 * 116.99857 * 179.97438 * 15 14 11 17 17 C 1.39310 * 119.81742 * 359.72985 * 16 15 14 18 18 C 1.36435 * 120.18530 * 179.76371 * 17 16 15 19 19 C 1.40836 * 119.80963 * 0.50589 * 18 17 16 20 20 C 1.41214 * 120.17690 * 179.72524 * 19 18 17 21 21 H 1.07999 * 120.00046 * 204.55928 * 20 19 18 22 22 C 1.39890 * 120.00197 * 24.56165 * 20 19 18 23 23 N 1.30876 * 119.99923 * 17.93662 * 22 20 19 24 24 Si 1.86801 * 119.99834 * 197.93115 * 22 20 19 25 25 H 1.48499 * 109.47314 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46785 * 120.00334 * 24 22 20 27 27 H 1.48495 * 109.47094 * 240.00131 * 24 22 20 28 28 C 1.40828 * 119.64025 * 359.74490 * 19 18 17 29 29 C 1.36435 * 119.81657 * 359.97438 * 28 19 18 30 30 C 1.52995 * 109.46856 * 59.99901 * 7 6 5 31 31 C 1.52996 * 109.47729 * 299.99949 * 30 7 6 32 32 H 4.18741 * 15.03927 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47324 * 60.00049 * 5 3 2 34 34 H 1.09000 * 109.47543 * 300.00083 * 5 3 2 35 35 H 1.08999 * 109.46597 * 60.00327 * 6 5 3 36 36 H 1.08999 * 109.46829 * 180.02562 * 6 5 3 37 37 H 1.00905 * 110.99808 * 278.96075 * 9 7 6 38 38 H 1.08999 * 109.47102 * 299.99698 * 10 9 7 39 39 H 1.09000 * 109.46772 * 60.00125 * 10 9 7 40 40 H 0.96701 * 113.99686 * 59.99375 * 13 11 10 41 41 H 1.09000 * 109.46875 * 295.00053 * 14 11 10 42 42 H 1.08997 * 109.46555 * 55.00046 * 14 11 10 43 43 H 1.07996 * 119.90651 * 0.02562 * 17 16 15 44 44 H 1.08001 * 120.09598 * 180.25478 * 18 17 16 45 45 H 0.97001 * 119.99830 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.09338 * 180.02562 * 28 19 18 47 47 H 1.08001 * 119.91326 * 179.97438 * 29 28 19 48 48 H 1.09008 * 109.47400 * 60.00095 * 30 7 6 49 49 H 1.09000 * 109.47198 * 179.97438 * 30 7 6 50 50 H 1.08997 * 109.47525 * 180.02562 * 31 30 7 51 51 H 1.09008 * 109.46799 * 300.00514 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.9613 -0.3610 5 6 3.1554 1.1150 -0.9162 6 6 4.6855 1.1162 -0.9157 7 6 5.1949 1.3531 0.5074 8 1 4.8307 2.3151 0.8682 9 7 6.6639 1.3548 0.5077 10 6 7.1891 2.1308 1.6390 11 6 8.7186 2.1089 1.6060 12 1 9.0669 1.0762 1.5883 13 8 9.1796 2.7873 0.4358 14 6 9.2657 2.8104 2.8509 15 8 10.6892 2.6886 2.8794 16 6 11.3355 3.2608 3.9262 17 6 10.6080 3.9332 4.9057 18 6 11.2498 4.5072 5.9640 19 6 12.6527 4.4277 6.0589 20 6 13.3254 5.0240 7.1479 21 1 14.3596 5.3187 7.0479 22 6 12.6523 5.2331 8.3562 23 7 11.5452 4.5828 8.6096 24 14 13.3337 6.4406 9.6081 25 1 14.5867 7.0418 9.0849 26 1 12.3364 7.5127 9.8555 27 1 13.6194 5.7275 10.8790 28 6 13.3810 3.7507 5.0616 29 6 12.7234 3.1771 4.0128 30 6 4.6853 0.2387 1.4235 31 6 3.1554 0.2375 1.4231 32 1 -1.0501 -0.0011 0.0001 33 1 2.7917 2.0770 -0.5552 34 1 2.7922 0.9465 -1.9300 35 1 5.0495 0.1542 -1.2766 36 1 5.0484 1.9104 -1.5681 37 1 7.0265 0.4132 0.5156 38 1 6.8385 3.1604 1.5673 39 1 6.8399 1.6922 2.5737 40 1 8.9063 3.7134 0.3848 41 1 8.9917 3.8650 2.8236 42 1 8.8435 2.3483 3.7432 43 1 9.5326 3.9965 4.8293 44 1 10.6840 5.0246 6.7247 45 1 11.0787 4.7275 9.4477 46 1 14.4570 3.6849 5.1273 47 1 13.2804 2.6579 3.2469 48 1 5.0495 -0.7233 1.0627 49 1 5.0486 0.4072 2.4373 50 1 2.7924 -0.5561 2.0761 51 1 2.7912 1.1996 1.7839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872252964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:58 Heat of formation + Delta-G solvation = -55.089920 kcal Electronic energy + Delta-G solvation = -28346.864453 eV Core-core repulsion = 24403.792096 eV Total energy + Delta-G solvation = -3943.072358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.68628 -40.16867 -38.84766 -37.67684 -36.10154 -35.20355 -33.58600 -31.81455 -31.74402 -31.49780 -30.83161 -29.24849 -26.85547 -25.71294 -23.67183 -23.39016 -23.04629 -22.58746 -22.01870 -20.96588 -19.27500 -19.01506 -18.65897 -17.83785 -17.42568 -16.93460 -16.77601 -15.97486 -15.91019 -15.75083 -15.63978 -15.50219 -15.17492 -15.01378 -14.65792 -14.50032 -14.20243 -14.12860 -13.77434 -13.61615 -13.50000 -13.21532 -13.16570 -13.01901 -12.76696 -12.71009 -12.55510 -12.31128 -12.11369 -11.99745 -11.90977 -11.77825 -11.67736 -11.58755 -11.49101 -11.21651 -10.97525 -10.89520 -10.86700 -10.80823 -9.57243 -9.27563 -8.91314 -8.60763 -6.22856 0.92951 1.04108 1.39740 1.50302 1.54913 1.88359 1.90978 2.22774 2.38955 2.71805 3.18483 3.46384 3.54917 3.70189 3.72793 3.82538 3.93416 4.01390 4.08125 4.18242 4.23934 4.28867 4.29299 4.38234 4.41584 4.44843 4.49237 4.53870 4.55791 4.65516 4.80142 4.83365 4.89473 5.00318 5.03967 5.07263 5.11000 5.15008 5.18446 5.21434 5.25606 5.36775 5.41411 5.45129 5.52192 5.65998 5.96841 6.05771 6.07570 6.23639 6.44073 6.56083 6.70795 6.78954 6.89506 6.94999 7.10204 8.36280 Molecular weight = 343.19amu Principal moments of inertia in cm(-1) A = 0.018271 B = 0.001618 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.138775 B =17306.084062 C =18504.494530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.210 4.210 3 C 0.020 3.980 4 H 0.096 0.904 5 C -0.103 4.103 6 C -0.099 4.099 7 C 0.090 3.910 8 H 0.074 0.926 9 N -0.679 5.679 10 C 0.041 3.959 11 C 0.126 3.874 12 H 0.097 0.903 13 O -0.559 6.559 14 C 0.030 3.970 15 O -0.328 6.328 16 C -0.001 4.001 17 C -0.175 4.175 18 C -0.154 4.154 19 C 0.053 3.947 20 C -0.499 4.499 21 H 0.075 0.925 22 C 0.034 3.966 23 N -0.832 5.832 24 Si 0.981 3.019 25 H -0.259 1.259 26 H -0.265 1.265 27 H -0.267 1.267 28 C -0.205 4.205 29 C -0.122 4.122 30 C -0.144 4.144 31 C -0.101 4.101 32 H 0.240 0.760 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.346 0.654 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.383 0.617 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.109 0.891 47 H 0.117 0.883 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.185 -7.024 -14.399 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.210 4.210 3 C 0.002 3.998 4 H 0.114 0.886 5 C -0.141 4.141 6 C -0.137 4.137 7 C -0.020 4.020 8 H 0.092 0.908 9 N -0.309 5.309 10 C -0.088 4.088 11 C 0.066 3.934 12 H 0.115 0.885 13 O -0.365 6.365 14 C -0.047 4.047 15 O -0.244 6.244 16 C -0.045 4.045 17 C -0.194 4.194 18 C -0.174 4.174 19 C 0.051 3.949 20 C -0.529 4.529 21 H 0.093 0.907 22 C -0.179 4.179 23 N -0.459 5.459 24 Si 0.802 3.198 25 H -0.182 1.182 26 H -0.189 1.189 27 H -0.192 1.192 28 C -0.225 4.225 29 C -0.141 4.141 30 C -0.183 4.183 31 C -0.139 4.139 32 H 0.257 0.743 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.164 0.836 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.127 0.873 47 H 0.135 0.865 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.936 -7.216 -14.955 25.946 hybrid contribution -0.524 0.398 1.936 2.044 sum -20.460 -6.818 -13.019 25.191 Atomic orbital electron populations 1.25684 0.96911 1.00366 0.99996 1.23612 0.95219 1.01037 1.01169 1.18411 0.83760 1.00768 0.96890 0.88559 1.21493 0.95463 0.97783 0.99356 1.21425 0.93666 1.02776 0.95845 1.21622 0.86374 0.98308 0.95702 0.90804 1.60444 1.07081 1.19540 1.43877 1.22447 0.92907 1.00216 0.93277 1.21763 0.92446 0.96753 0.82406 0.88511 1.86593 1.78576 1.29023 1.42285 1.23494 0.80038 1.01196 0.99935 1.85864 1.20549 1.74328 1.43646 1.18727 0.91858 1.03519 0.90427 1.20802 0.98880 1.03365 0.96364 1.20909 0.95106 1.03495 0.97875 1.17968 0.92715 0.91200 0.93012 1.19739 0.99211 1.37230 0.96700 0.90676 1.26710 0.94574 0.95895 1.00749 1.69890 1.16710 1.34327 1.24948 0.85174 0.79408 0.78131 0.77073 1.18226 1.18934 1.19185 1.20796 0.98816 1.04756 0.98082 1.19895 0.91416 1.03347 0.99437 1.22245 0.95601 1.00147 1.00356 1.21423 0.95165 1.02250 0.95093 0.74305 0.91945 0.91062 0.91318 0.91290 0.83559 0.89677 0.93252 0.76836 0.91944 0.91961 0.86345 0.87514 0.90259 0.87299 0.86464 0.90772 0.91876 0.91611 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 19.25 74.32 1.43 -1.39 16 2 C -0.21 -3.22 12.56 31.13 0.39 -2.83 16 3 C 0.02 0.24 2.57 -12.60 -0.03 0.21 16 4 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.10 -1.20 5.16 30.60 0.16 -1.04 16 6 C -0.10 -1.18 5.53 30.60 0.17 -1.01 16 7 C 0.09 1.15 2.47 44.91 0.11 1.26 16 8 H 0.07 1.03 7.80 -2.39 -0.02 1.01 16 9 N -0.68 -10.44 6.20 -491.59 -3.05 -13.48 16 10 C 0.04 0.69 5.12 86.30 0.44 1.13 16 11 C 0.13 2.88 3.43 30.60 0.10 2.98 16 12 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 13 O -0.56 -14.21 13.25 -144.34 -1.91 -16.12 16 14 C 0.03 0.86 4.36 71.98 0.31 1.18 16 15 O -0.33 -12.93 10.09 -85.31 -0.86 -13.79 16 16 C 0.00 -0.06 6.71 22.79 0.15 0.09 16 17 C -0.18 -8.13 8.96 22.11 0.20 -7.93 16 18 C -0.15 -8.14 8.64 22.48 0.19 -7.94 16 19 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 20 C -0.50 -27.14 9.04 23.40 0.21 -26.93 16 21 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 22 C 0.03 1.74 5.13 85.24 0.44 2.18 16 23 N -0.83 -43.54 10.96 21.82 0.24 -43.30 16 24 Si 0.98 38.29 29.60 68.60 2.03 40.32 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 27 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 28 C -0.20 -10.30 9.74 22.48 0.22 -10.08 16 29 C -0.12 -5.71 9.92 22.11 0.22 -5.49 16 30 C -0.14 -1.67 5.17 30.59 0.16 -1.51 16 31 C -0.10 -1.23 5.16 30.59 0.16 -1.07 16 32 H 0.24 1.48 7.80 -4.41 -0.03 1.44 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.35 5.07 8.47 -89.69 -0.76 4.31 16 38 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 39 H 0.05 0.77 7.44 -2.39 -0.02 0.75 16 40 H 0.38 7.38 9.05 -74.06 -0.67 6.71 16 41 H 0.06 1.70 7.63 -2.39 -0.02 1.68 16 42 H 0.06 1.75 7.66 -2.39 -0.02 1.73 16 43 H 0.12 4.72 6.27 -2.91 -0.02 4.70 16 44 H 0.11 5.83 6.16 -2.91 -0.02 5.82 16 45 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 46 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 47 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 48 H 0.07 0.79 8.13 -2.38 -0.02 0.77 16 49 H 0.06 0.79 7.45 -2.39 -0.02 0.77 16 50 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -64.53 415.28 0.86 -63.67 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: -0.50 Total: 38.12 kcal Atomic # 6 Polarization: -60.33 SS G_CDS: 4.92 Total: -55.41 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -2.81 Total: -56.79 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -2.77 Total: -29.91 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -64.53 0.86 -63.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872252964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.577 kcal (2) G-P(sol) polarization free energy of solvation -64.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds