Wall clock time and date at job start Wed Apr 1 2020 02:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00358 * 2 1 4 4 C 1.53002 * 109.47465 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47258 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47131 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99826 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00157 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00011 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.57436 * 35.15769 * 9 8 6 11 11 C 1.53126 * 109.52161 * 274.99987 * 9 8 6 12 12 C 1.53029 * 109.27795 * 182.44052 * 11 9 8 13 13 N 1.46854 * 109.52283 * 59.18140 * 12 11 9 14 14 C 1.46901 * 111.00034 * 174.15832 * 13 12 11 15 15 C 1.50696 * 109.47020 * 293.95603 * 14 13 12 16 16 O 1.21285 * 120.00418 * 0.02562 * 15 14 13 17 17 N 1.34785 * 120.00007 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00265 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00086 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00231 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99532 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47123 * 90.00138 * 22 20 18 24 24 H 1.48501 * 109.46846 * 210.00094 * 22 20 18 25 25 H 1.48497 * 109.46945 * 329.99857 * 22 20 18 26 26 C 1.46843 * 111.19690 * 298.25524 * 13 12 11 27 27 C 1.53039 * 109.52391 * 61.74512 * 26 13 12 28 28 H 1.08997 * 109.50468 * 180.87980 * 27 26 13 29 29 O 1.42898 * 109.50506 * 60.75512 * 27 26 13 30 30 H 1.08997 * 109.47720 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47197 * 300.00015 * 1 2 3 32 32 H 1.09000 * 109.47068 * 59.99604 * 1 2 3 33 33 H 1.09007 * 109.47392 * 59.99866 * 3 2 1 34 34 H 1.09008 * 109.47154 * 300.00333 * 3 2 1 35 35 H 1.08997 * 109.47097 * 60.00041 * 4 3 2 36 36 H 1.09005 * 109.46597 * 299.99868 * 4 3 2 37 37 H 1.08998 * 109.47246 * 59.99121 * 5 4 3 38 38 H 1.09002 * 109.46557 * 299.99486 * 5 4 3 39 39 H 0.97003 * 119.99913 * 0.02562 * 8 6 5 40 40 H 1.08994 * 109.50285 * 302.38694 * 11 9 8 41 41 H 1.09001 * 109.50117 * 62.50274 * 11 9 8 42 42 H 1.08999 * 109.46487 * 179.19278 * 12 11 9 43 43 H 1.09001 * 109.46656 * 299.16371 * 12 11 9 44 44 H 1.09008 * 109.47071 * 53.95431 * 14 13 12 45 45 H 1.08997 * 109.47083 * 173.95301 * 14 13 12 46 46 H 0.97000 * 119.99791 * 0.02562 * 17 15 14 47 47 H 0.97013 * 119.99685 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.45906 * 181.75382 * 26 13 12 49 49 H 1.08994 * 109.46526 * 301.73687 * 26 13 12 50 50 H 0.96704 * 113.99487 * 60.20057 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 0.0000 7 8 6.1816 1.3683 -0.0009 8 7 6.4241 3.5735 0.0000 9 6 7.8845 3.4578 -0.0006 10 1 8.1820 2.5921 -0.5923 11 6 8.3852 3.2916 1.4370 12 6 9.9143 3.2324 1.4357 13 7 10.4528 4.4670 0.8505 14 6 11.9173 4.5058 0.9588 15 6 12.3114 4.5956 2.4105 16 8 11.4565 4.6239 3.2704 17 7 13.6140 4.6434 2.7535 18 6 13.9726 4.7256 4.0741 19 1 13.2113 4.7516 4.8398 20 6 15.3154 4.7754 4.4277 21 7 16.2416 4.7442 3.4960 22 14 15.8040 4.8866 6.2272 23 1 15.9648 3.5186 6.7820 24 1 17.0878 5.6234 6.3469 25 1 14.7478 5.6064 6.9832 26 6 10.0239 4.6240 -0.5451 27 6 8.4980 4.7248 -0.6031 28 1 8.1790 4.8257 -1.6404 29 8 8.0664 5.8649 0.1426 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8892 37 1 3.8365 3.1227 0.8903 38 1 3.8359 3.1237 -0.8896 39 1 6.0069 4.4493 0.0004 40 1 8.0542 4.1387 2.0378 41 1 7.9856 2.3686 1.8570 42 1 10.2746 3.1285 2.4591 43 1 10.2443 2.3770 0.8461 44 1 12.3380 3.5993 0.5234 45 1 12.2981 5.3761 0.4244 46 1 14.2977 4.6204 2.0658 47 1 17.1792 4.7793 3.7428 48 1 10.4637 5.5309 -0.9603 49 1 10.3531 3.7621 -1.1254 50 1 8.4177 6.7045 -0.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099704026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:29 Heat of formation + Delta-G solvation = -167.242900 kcal Electronic energy + Delta-G solvation = -30119.404102 eV Core-core repulsion = 25760.619163 eV Total energy + Delta-G solvation = -4358.784939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36154 -39.15964 -38.28078 -37.87740 -35.63735 -34.78461 -33.93492 -33.81526 -31.56329 -31.07384 -29.84738 -28.41525 -27.09986 -25.95541 -24.51980 -23.17348 -22.84437 -21.89979 -20.42904 -19.89417 -19.18488 -17.85107 -17.51964 -17.00183 -16.72411 -16.61794 -16.41915 -15.90127 -15.56174 -15.25138 -15.17928 -14.94608 -14.52572 -14.38067 -13.98428 -13.89583 -13.83203 -13.50477 -13.31689 -12.85834 -12.77058 -12.50464 -12.40588 -12.12149 -12.05500 -11.78143 -11.58333 -11.48412 -11.40360 -11.25981 -11.18621 -11.07359 -10.77194 -10.51747 -10.37246 -10.20403 -10.07420 -10.06302 -9.87915 -9.46246 -9.07794 -8.39730 -7.95300 -7.81289 -6.39896 -3.80389 2.50560 2.89170 3.19332 3.27862 3.33843 3.46072 3.86134 3.93230 4.18098 4.29153 4.44748 4.57827 4.60182 4.70712 4.83064 4.89145 4.90971 4.91451 5.01105 5.03073 5.08193 5.09891 5.21900 5.26477 5.27727 5.29618 5.49154 5.52602 5.58785 5.68843 5.75757 5.77290 5.81905 5.93748 5.95495 6.08680 6.27288 6.33082 6.56668 6.60039 6.76087 7.28131 7.36939 7.41807 7.57172 7.63290 8.08632 8.11256 8.64203 9.20468 9.56747 10.08885 10.77909 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.001755 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.890621 B =15951.745952 C =16776.764890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.137 4.137 6 C 0.511 3.489 7 O -0.540 6.540 8 N -0.719 5.719 9 C 0.153 3.847 10 H 0.093 0.907 11 C -0.116 4.116 12 C 0.055 3.945 13 N -0.504 5.504 14 C 0.045 3.955 15 C 0.444 3.556 16 O -0.574 6.574 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.023 3.977 27 C 0.107 3.893 28 H 0.060 0.940 29 O -0.548 6.548 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.405 0.595 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.022 0.978 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.081 0.919 49 H 0.039 0.961 50 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.455 -0.987 -13.926 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.177 4.177 6 C 0.297 3.703 7 O -0.417 6.417 8 N -0.371 5.371 9 C 0.048 3.952 10 H 0.111 0.889 11 C -0.155 4.155 12 C -0.073 4.073 13 N -0.228 5.228 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.458 6.458 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.106 4.106 27 C 0.047 3.953 28 H 0.078 0.922 29 O -0.353 6.353 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.240 0.760 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.058 0.942 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -24.839 -1.982 -12.714 27.974 hybrid contribution 1.123 0.548 -0.442 1.325 sum -23.716 -1.435 -13.156 27.158 Atomic orbital electron populations 1.22746 0.80978 1.02852 0.99940 1.87896 1.19717 1.28003 1.95404 1.22559 0.94127 0.84734 1.00151 1.21222 0.92068 0.95865 1.05103 1.21537 0.92202 0.99377 1.04620 1.20595 0.89425 0.84358 0.75889 1.90731 1.75069 1.26584 1.49270 1.45995 1.06733 1.09163 1.75164 1.21120 0.79216 0.96406 0.98459 0.88944 1.21837 0.95361 1.02808 0.95509 1.22234 0.93951 0.88494 1.02578 1.61465 1.08609 1.37980 1.14757 1.21857 0.88022 1.01316 0.97385 1.19719 0.83442 0.84429 0.89459 1.90496 1.49461 1.54920 1.50941 1.41865 1.05227 1.64402 1.08703 1.19698 0.92187 1.47225 0.83638 0.87922 1.25246 0.95408 0.97405 0.99872 1.69616 1.00993 1.50743 1.33069 0.85865 0.77935 0.78355 0.82182 1.20455 1.20961 1.19424 1.22797 0.95520 1.01590 0.90715 1.21998 0.92717 0.86768 0.93790 0.92216 1.86485 1.73534 1.16307 1.58994 0.89576 0.94030 0.94105 0.93179 0.93298 0.90281 0.90145 0.88591 0.88804 0.75983 0.89810 0.91536 0.87464 0.95990 0.93542 0.89441 0.77550 0.91930 0.90069 0.94245 0.77352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.67 10.70 -35.23 -0.38 -4.05 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 C -0.10 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C -0.14 -0.97 5.70 -27.88 -0.16 -1.13 16 6 C 0.51 5.63 7.80 -10.99 -0.09 5.54 16 7 O -0.54 -8.24 15.65 5.55 0.09 -8.15 16 8 N -0.72 -7.24 5.05 -53.68 -0.27 -7.52 16 9 C 0.15 1.84 2.30 -67.80 -0.16 1.69 16 10 H 0.09 1.21 7.59 -51.93 -0.39 0.82 16 11 C -0.12 -1.75 5.52 -26.65 -0.15 -1.90 16 12 C 0.06 0.94 5.11 -3.83 -0.02 0.92 16 13 N -0.50 -8.18 4.28 -236.12 -1.01 -9.19 16 14 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 15 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 16 O -0.57 -15.45 13.92 5.55 0.08 -15.37 16 17 N -0.57 -14.29 5.29 -10.97 -0.06 -14.35 16 18 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 22 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.02 0.27 5.12 -3.83 -0.02 0.25 16 27 C 0.11 1.10 3.42 -26.65 -0.09 1.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 O -0.55 -5.81 12.06 -35.23 -0.42 -6.23 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.28 8.14 -51.92 -0.42 -0.15 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.41 3.25 8.12 -40.82 -0.33 2.92 16 40 H 0.08 1.40 7.80 -51.93 -0.40 1.00 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.11 2.23 5.80 -51.93 -0.30 1.93 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.76 8.12 -51.92 -0.42 0.34 16 45 H 0.09 1.36 7.98 -51.93 -0.41 0.95 16 46 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 47 H 0.27 6.99 8.31 -40.81 -0.34 6.65 16 48 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.38 2.77 9.08 45.56 0.41 3.18 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -35.17 407.37 -7.56 -42.72 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -7.59 Total: 13.24 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 0.18 Total: 10.48 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.61 Total: -54.92 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.64 Total: -33.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.17 -7.56 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.521 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds