Wall clock time and date at job start Wed Apr 1 2020 02:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00358 * 2 1 4 4 C 1.53002 * 109.47465 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47258 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47131 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99826 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00157 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00011 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.57436 * 35.15769 * 9 8 6 11 11 C 1.53126 * 109.52161 * 274.99987 * 9 8 6 12 12 C 1.53029 * 109.27795 * 182.44052 * 11 9 8 13 13 N 1.46854 * 109.52283 * 59.18140 * 12 11 9 14 14 C 1.46901 * 111.00034 * 174.15832 * 13 12 11 15 15 C 1.50696 * 109.47020 * 293.95603 * 14 13 12 16 16 O 1.21285 * 120.00418 * 0.02562 * 15 14 13 17 17 N 1.34785 * 120.00007 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00265 * 179.97438 * 17 15 14 19 19 H 1.07999 * 120.00086 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00231 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99532 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47123 * 90.00138 * 22 20 18 24 24 H 1.48501 * 109.46846 * 210.00094 * 22 20 18 25 25 H 1.48497 * 109.46945 * 329.99857 * 22 20 18 26 26 C 1.46843 * 111.19690 * 298.25524 * 13 12 11 27 27 C 1.53039 * 109.52391 * 61.74512 * 26 13 12 28 28 H 1.08997 * 109.50468 * 180.87980 * 27 26 13 29 29 O 1.42898 * 109.50506 * 60.75512 * 27 26 13 30 30 H 1.08997 * 109.47720 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47197 * 300.00015 * 1 2 3 32 32 H 1.09000 * 109.47068 * 59.99604 * 1 2 3 33 33 H 1.09007 * 109.47392 * 59.99866 * 3 2 1 34 34 H 1.09008 * 109.47154 * 300.00333 * 3 2 1 35 35 H 1.08997 * 109.47097 * 60.00041 * 4 3 2 36 36 H 1.09005 * 109.46597 * 299.99868 * 4 3 2 37 37 H 1.08998 * 109.47246 * 59.99121 * 5 4 3 38 38 H 1.09002 * 109.46557 * 299.99486 * 5 4 3 39 39 H 0.97003 * 119.99913 * 0.02562 * 8 6 5 40 40 H 1.08994 * 109.50285 * 302.38694 * 11 9 8 41 41 H 1.09001 * 109.50117 * 62.50274 * 11 9 8 42 42 H 1.08999 * 109.46487 * 179.19278 * 12 11 9 43 43 H 1.09001 * 109.46656 * 299.16371 * 12 11 9 44 44 H 1.09008 * 109.47071 * 53.95431 * 14 13 12 45 45 H 1.08997 * 109.47083 * 173.95301 * 14 13 12 46 46 H 0.97000 * 119.99791 * 0.02562 * 17 15 14 47 47 H 0.97013 * 119.99685 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.45906 * 181.75382 * 26 13 12 49 49 H 1.08994 * 109.46526 * 301.73687 * 26 13 12 50 50 H 0.96704 * 113.99487 * 60.20057 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 0.0000 7 8 6.1816 1.3683 -0.0009 8 7 6.4241 3.5735 0.0000 9 6 7.8845 3.4578 -0.0006 10 1 8.1820 2.5921 -0.5923 11 6 8.3852 3.2916 1.4370 12 6 9.9143 3.2324 1.4357 13 7 10.4528 4.4670 0.8505 14 6 11.9173 4.5058 0.9588 15 6 12.3114 4.5956 2.4105 16 8 11.4565 4.6239 3.2704 17 7 13.6140 4.6434 2.7535 18 6 13.9726 4.7256 4.0741 19 1 13.2113 4.7516 4.8398 20 6 15.3154 4.7754 4.4277 21 7 16.2416 4.7442 3.4960 22 14 15.8040 4.8866 6.2272 23 1 15.9648 3.5186 6.7820 24 1 17.0878 5.6234 6.3469 25 1 14.7478 5.6064 6.9832 26 6 10.0239 4.6240 -0.5451 27 6 8.4980 4.7248 -0.6031 28 1 8.1790 4.8257 -1.6404 29 8 8.0664 5.8649 0.1426 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8908 36 1 3.8574 0.6435 0.8892 37 1 3.8365 3.1227 0.8903 38 1 3.8359 3.1237 -0.8896 39 1 6.0069 4.4493 0.0004 40 1 8.0542 4.1387 2.0378 41 1 7.9856 2.3686 1.8570 42 1 10.2746 3.1285 2.4591 43 1 10.2443 2.3770 0.8461 44 1 12.3380 3.5993 0.5234 45 1 12.2981 5.3761 0.4244 46 1 14.2977 4.6204 2.0658 47 1 17.1792 4.7793 3.7428 48 1 10.4637 5.5309 -0.9603 49 1 10.3531 3.7621 -1.1254 50 1 8.4177 6.7045 -0.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099704026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:28 Heat of formation + Delta-G solvation = -198.597687 kcal Electronic energy + Delta-G solvation = -30120.763748 eV Core-core repulsion = 25760.619163 eV Total energy + Delta-G solvation = -4360.144585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35119 -40.42961 -39.44872 -38.81648 -36.81130 -35.85106 -35.66707 -34.63361 -33.31091 -32.51789 -30.86972 -29.25314 -28.27175 -26.76783 -26.11755 -24.26953 -23.96821 -22.68254 -21.34444 -21.03284 -20.82793 -19.86973 -18.36095 -17.99005 -17.54942 -17.44854 -17.29951 -17.11718 -16.69956 -16.42713 -16.16882 -16.15136 -15.83797 -15.56857 -15.41002 -15.25499 -14.98143 -14.57513 -14.42743 -14.19741 -13.86452 -13.59221 -13.45837 -13.14047 -13.01838 -12.99363 -12.75288 -12.67691 -12.60691 -12.46351 -12.38872 -12.14441 -12.07732 -11.96809 -11.88297 -11.59465 -11.44550 -10.93533 -10.81842 -10.60031 -10.25390 -10.03286 -9.95030 -9.16029 -8.45820 -5.93967 1.37571 1.41133 1.53763 1.65484 2.07659 2.11856 2.28599 2.71210 2.91449 3.21023 3.35572 3.39762 3.68854 3.78245 3.87062 4.00026 4.01399 4.12131 4.17152 4.27071 4.34054 4.38546 4.45280 4.48782 4.52193 4.52523 4.54194 4.59421 4.61359 4.69049 4.71981 4.74222 4.79318 4.86639 4.87752 5.07393 5.12650 5.24903 5.30706 5.41660 5.51075 5.88605 6.07358 6.22389 6.26968 6.61279 6.62598 7.01765 7.14770 7.30242 7.58541 8.15261 8.71589 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.001755 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.890621 B =15951.745952 C =16776.764890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.062 3.938 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.505 3.495 7 O -0.589 6.589 8 N -0.707 5.707 9 C 0.155 3.845 10 H 0.084 0.916 11 C -0.105 4.105 12 C 0.060 3.940 13 N -0.518 5.518 14 C 0.057 3.943 15 C 0.440 3.560 16 O -0.614 6.614 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.019 3.981 27 C 0.118 3.882 28 H 0.099 0.901 29 O -0.563 6.563 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.419 0.581 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.117 0.883 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.108 0.892 49 H 0.051 0.949 50 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.621 0.675 -15.881 30.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.014 4.014 4 C -0.141 4.141 5 C -0.165 4.165 6 C 0.294 3.706 7 O -0.470 6.470 8 N -0.359 5.359 9 C 0.050 3.950 10 H 0.102 0.898 11 C -0.144 4.144 12 C -0.069 4.069 13 N -0.243 5.243 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.109 4.109 27 C 0.058 3.942 28 H 0.116 0.884 29 O -0.371 6.371 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.256 0.744 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.126 0.874 49 H 0.069 0.931 50 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -26.017 -0.274 -14.708 29.888 hybrid contribution 1.432 0.011 0.163 1.441 sum -24.586 -0.263 -14.545 28.567 Atomic orbital electron populations 1.22916 0.79358 1.03667 1.01081 1.87849 1.21654 1.29446 1.95678 1.22612 0.92624 0.84335 1.01857 1.21162 0.93665 0.96475 1.02786 1.21539 0.88763 0.98861 1.07340 1.21353 0.91130 0.83620 0.74535 1.90716 1.76242 1.28491 1.51536 1.45881 1.05855 1.09751 1.74390 1.20960 0.80569 0.97630 0.95887 0.89804 1.21654 0.94053 1.00949 0.97717 1.22018 0.95165 0.89541 1.00127 1.61411 1.07530 1.37233 1.18121 1.21748 0.89383 1.03371 0.92880 1.20832 0.82354 0.82106 0.91935 1.90477 1.50402 1.56007 1.53075 1.41926 1.06137 1.65231 1.07981 1.19637 0.92387 1.49570 0.84586 0.90524 1.25989 0.94845 0.96418 1.03900 1.69672 1.01362 1.50495 1.34617 0.84958 0.77763 0.78523 0.77270 1.19853 1.19400 1.19884 1.23028 0.96773 1.03336 0.87785 1.21958 0.91339 0.85648 0.95275 0.88370 1.86454 1.73742 1.17197 1.59705 0.89102 0.93037 0.92728 0.91727 0.91123 0.92211 0.92996 0.86314 0.85273 0.74375 0.91748 0.93330 0.92200 0.95454 0.91901 0.86489 0.77047 0.91357 0.87400 0.93074 0.75464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.73 10.70 -148.98 -1.59 -9.33 16 3 C 0.06 0.79 5.94 71.98 0.43 1.22 16 4 C -0.10 -1.74 4.87 30.60 0.15 -1.59 16 5 C -0.13 -1.50 5.70 29.85 0.17 -1.33 16 6 C 0.51 10.70 7.80 87.66 0.68 11.39 16 7 O -0.59 -18.49 15.65 -3.04 -0.05 -18.54 16 8 N -0.71 -13.04 5.05 -442.14 -2.23 -15.27 16 9 C 0.16 3.56 2.30 45.07 0.10 3.67 16 10 H 0.08 2.13 7.59 -2.39 -0.02 2.11 16 11 C -0.10 -3.25 5.52 30.65 0.17 -3.08 16 12 C 0.06 2.11 5.11 86.32 0.44 2.55 16 13 N -0.52 -16.32 4.28 -900.94 -3.85 -20.17 16 14 C 0.06 1.95 5.45 85.56 0.47 2.42 16 15 C 0.44 21.18 7.46 87.65 0.65 21.83 16 16 O -0.61 -34.52 13.92 -3.05 -0.04 -34.56 16 17 N -0.58 -29.78 5.29 -306.99 -1.62 -31.40 16 18 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 22 Si 0.99 43.60 29.55 68.60 2.03 45.62 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.02 0.38 5.12 86.33 0.44 0.83 16 27 C 0.12 2.04 3.42 30.65 0.10 2.14 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 O -0.56 -10.28 12.06 -148.98 -1.80 -12.08 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 37 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.13 0.69 8.14 -2.39 -0.02 0.68 16 39 H 0.42 5.52 8.12 -92.71 -0.75 4.77 16 40 H 0.06 2.23 7.80 -2.39 -0.02 2.21 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 2.67 5.80 -2.39 -0.01 2.66 16 43 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.97 8.12 -2.38 -0.02 1.95 16 45 H 0.12 3.33 7.98 -2.39 -0.02 3.31 16 46 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 47 H 0.28 14.09 8.31 -92.70 -0.77 13.31 16 48 H 0.11 1.67 8.01 -2.39 -0.02 1.65 16 49 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.40 4.37 9.08 -74.05 -0.67 3.69 16 Total: -1.00 -81.32 407.37 -3.73 -85.05 By element: Atomic # 1 Polarization: 38.49 SS G_CDS: -1.19 Total: 37.31 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 6.34 Total: 23.07 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -7.42 Total: -116.55 kcal Atomic # 8 Polarization: -71.02 SS G_CDS: -3.48 Total: -74.51 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -81.32 -3.73 -85.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.547 kcal (2) G-P(sol) polarization free energy of solvation -81.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds