Wall clock time and date at job start Wed Apr 1 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99819 * 2 1 4 4 C 1.53008 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47105 * 179.97438 * 5 4 3 7 7 O 1.21276 * 119.99764 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99815 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99743 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.52506 * 324.88197 * 9 8 6 11 11 C 1.53124 * 109.51794 * 85.00502 * 9 8 6 12 12 C 1.53032 * 109.27817 * 62.31477 * 11 9 8 13 13 N 1.46847 * 109.52682 * 59.17958 * 12 11 9 14 14 C 1.46899 * 111.00044 * 174.15899 * 13 12 11 15 15 C 1.50703 * 109.47107 * 66.04660 * 14 13 12 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99577 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47514 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46914 * 120.00413 * 22 20 18 25 25 H 1.48498 * 109.47071 * 239.99704 * 22 20 18 26 26 C 1.46842 * 111.19604 * 298.25798 * 13 12 11 27 27 C 1.53035 * 109.52655 * 61.73774 * 26 13 12 28 28 H 1.09005 * 109.49923 * 60.76046 * 27 26 13 29 29 O 1.42895 * 109.50432 * 180.87926 * 27 26 13 30 30 H 1.08999 * 109.46964 * 59.99988 * 1 2 3 31 31 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46899 * 299.99864 * 1 2 3 33 33 H 1.09002 * 109.46931 * 60.00555 * 3 2 1 34 34 H 1.09005 * 109.47319 * 299.99911 * 3 2 1 35 35 H 1.08994 * 109.46702 * 60.00133 * 4 3 2 36 36 H 1.09005 * 109.46927 * 300.00091 * 4 3 2 37 37 H 1.09004 * 109.47074 * 59.99929 * 5 4 3 38 38 H 1.08999 * 109.47195 * 300.00282 * 5 4 3 39 39 H 0.96999 * 120.00561 * 0.02562 * 8 6 5 40 40 H 1.08997 * 109.49990 * 302.37176 * 11 9 8 41 41 H 1.08997 * 109.53124 * 182.27474 * 11 9 8 42 42 H 1.09003 * 109.46697 * 299.15746 * 12 11 9 43 43 H 1.09005 * 109.46432 * 179.19590 * 12 11 9 44 44 H 1.09002 * 109.47043 * 186.04640 * 14 13 12 45 45 H 1.09001 * 109.47354 * 306.04701 * 14 13 12 46 46 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 47 47 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46292 * 181.75922 * 26 13 12 49 49 H 1.09008 * 109.46217 * 301.72586 * 26 13 12 50 50 H 0.96704 * 114.00246 * 299.79969 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6601 2.4634 0.0000 7 8 6.1816 1.3685 -0.0009 8 7 6.4240 3.5737 0.0000 9 6 7.8844 3.4581 0.0006 10 1 8.1810 2.5918 0.5919 11 6 8.3850 3.2921 -1.4370 12 6 8.0188 4.5380 -2.2466 13 7 8.6310 5.7216 -1.6297 14 6 8.4162 6.9167 -2.4565 15 6 6.9464 7.2484 -2.4876 16 8 6.1557 6.5569 -1.8812 17 7 6.5105 8.3127 -3.1902 18 6 5.1735 8.6147 -3.2181 19 1 4.4696 7.9996 -2.6775 20 6 4.7243 9.7124 -3.9420 21 7 5.5808 10.4607 -4.6003 22 14 2.9024 10.1235 -3.9806 23 1 2.1541 9.1336 -3.1648 24 1 2.6901 11.4841 -3.4247 25 1 2.4148 10.0801 -5.3826 26 6 8.1296 5.9285 -0.2652 27 6 8.4991 4.7241 0.6037 28 1 9.5836 4.6205 0.6397 29 8 7.9932 4.9168 1.9261 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6435 0.8892 37 1 3.8364 3.1227 0.8905 38 1 3.8358 3.1238 -0.8895 39 1 6.0068 4.4495 0.0004 40 1 7.9176 2.4158 -1.8861 41 1 9.4676 3.1655 -1.4335 42 1 6.9353 4.6557 -2.2618 43 1 8.3864 4.4291 -3.2670 44 1 8.9690 7.7554 -2.0333 45 1 8.7669 6.7249 -3.4705 46 1 7.1429 8.8655 -3.6755 47 1 5.2670 11.2267 -5.1059 48 1 8.5776 6.8297 0.1536 49 1 7.0455 6.0398 -0.2896 50 1 8.3410 5.7025 2.3698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099704027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:33 Heat of formation + Delta-G solvation = -168.863771 kcal Electronic energy + Delta-G solvation = -31481.151705 eV Core-core repulsion = 27122.296480 eV Total energy + Delta-G solvation = -4358.855225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39613 -39.11469 -38.11545 -37.72282 -35.86944 -34.51155 -33.82688 -33.62540 -31.52803 -31.19305 -29.52644 -28.12821 -27.14531 -25.76244 -24.69471 -23.06702 -22.57652 -22.03924 -20.44688 -19.52728 -18.91147 -17.99498 -17.37542 -17.21499 -16.46438 -16.35220 -16.26434 -15.58626 -15.46643 -15.24158 -15.09634 -14.91577 -14.68024 -14.26357 -14.02129 -13.83457 -13.70134 -13.48213 -13.20840 -12.77960 -12.54066 -12.24709 -12.13166 -12.11226 -11.96012 -11.85735 -11.64692 -11.29983 -11.26198 -11.14964 -10.97616 -10.94383 -10.82938 -10.47636 -10.38590 -10.28159 -9.91785 -9.84057 -9.63840 -9.57426 -9.33964 -8.81269 -8.11836 -7.53360 -6.56541 -3.98217 2.84601 3.04263 3.16950 3.22353 3.22678 3.69562 3.72614 3.98559 4.04686 4.32723 4.76302 4.84038 4.86227 4.88615 4.98556 5.07807 5.12281 5.12959 5.17978 5.22820 5.30290 5.33702 5.36182 5.40051 5.43920 5.45586 5.61542 5.69849 5.72788 5.79491 5.93304 6.01068 6.05086 6.08297 6.10371 6.18841 6.23357 6.43375 6.58032 6.72012 6.98082 7.18805 7.27167 7.40317 7.64589 7.75399 7.89204 8.42292 8.45058 9.01270 9.37113 9.86358 10.59845 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007194 B = 0.003475 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.113412 B = 8056.032719 C =11172.750030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.518 3.482 7 O -0.552 6.552 8 N -0.708 5.708 9 C 0.158 3.842 10 H 0.088 0.912 11 C -0.123 4.123 12 C 0.039 3.961 13 N -0.509 5.509 14 C 0.041 3.959 15 C 0.405 3.595 16 O -0.597 6.597 17 N -0.553 5.553 18 C -0.303 4.303 19 H 0.104 0.896 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.000 4.000 27 C 0.102 3.898 28 H 0.070 0.930 29 O -0.562 6.562 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.911 -10.472 8.032 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.017 4.017 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.304 3.696 7 O -0.431 6.431 8 N -0.360 5.360 9 C 0.053 3.947 10 H 0.106 0.894 11 C -0.162 4.162 12 C -0.088 4.088 13 N -0.233 5.233 14 C -0.091 4.091 15 C 0.191 3.809 16 O -0.485 6.485 17 N -0.188 5.188 18 C -0.433 4.433 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.129 4.129 27 C 0.042 3.958 28 H 0.088 0.912 29 O -0.367 6.367 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.247 0.753 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.112 0.888 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.031 -12.323 8.208 14.842 hybrid contribution -1.408 2.282 -0.465 2.721 sum -0.376 -10.041 7.743 12.685 Atomic orbital electron populations 1.22735 0.81139 1.02632 1.00010 1.87875 1.19597 1.28204 1.95437 1.22588 0.94226 0.84523 1.00365 1.21186 0.91948 0.95964 1.04720 1.21541 0.92401 0.99090 1.04980 1.20479 0.89392 0.84202 0.75509 1.90666 1.75205 1.26704 1.50518 1.45989 1.06319 1.09599 1.74136 1.20883 0.80249 0.97358 0.96228 0.89378 1.21928 1.01542 0.98243 0.94439 1.22255 1.00563 0.88947 0.97076 1.62389 1.56388 1.02829 1.01726 1.22045 0.94286 0.93674 0.99045 1.21033 0.90748 0.84092 0.85001 1.90327 1.56941 1.52420 1.48778 1.42069 1.09008 1.24693 1.43007 1.19743 0.83624 1.10738 1.29179 0.87853 1.25305 1.00277 0.96001 0.96179 1.69611 1.34843 1.17599 1.31605 0.85812 0.82025 0.78449 0.78123 1.19244 1.20647 1.20643 1.23112 1.03481 0.97027 0.89255 1.22043 0.97257 0.94383 0.82103 0.91232 1.86532 1.72415 1.49908 1.27816 0.94035 0.89729 0.94124 0.93218 0.93042 0.90367 0.90479 0.88807 0.88390 0.75298 0.90592 0.90586 0.90945 0.91429 0.89295 0.89217 0.77354 0.91708 0.91496 0.88820 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.71 10.70 -35.23 -0.38 -5.09 16 3 C 0.06 0.64 5.94 37.16 0.22 0.86 16 4 C -0.10 -1.22 4.87 -26.73 -0.13 -1.35 16 5 C -0.14 -1.69 5.70 -27.88 -0.16 -1.85 16 6 C 0.52 7.78 7.80 -10.99 -0.09 7.69 16 7 O -0.55 -9.83 15.65 5.56 0.09 -9.75 16 8 N -0.71 -10.35 4.18 -53.68 -0.22 -10.58 16 9 C 0.16 2.22 2.51 -67.80 -0.17 2.05 16 10 H 0.09 1.32 7.59 -51.93 -0.39 0.93 16 11 C -0.12 -1.67 5.76 -26.65 -0.15 -1.82 16 12 C 0.04 0.60 4.95 -3.84 -0.02 0.58 16 13 N -0.51 -7.56 4.86 -236.11 -1.15 -8.70 16 14 C 0.04 0.66 5.86 -4.98 -0.03 0.63 16 15 C 0.41 8.40 7.20 -10.98 -0.08 8.32 16 16 O -0.60 -13.38 11.20 5.55 0.06 -13.32 16 17 N -0.55 -12.84 5.29 -10.97 -0.06 -12.90 16 18 C -0.30 -7.84 9.68 -14.94 -0.14 -7.99 16 19 H 0.10 2.80 7.16 -52.49 -0.38 2.42 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -23.24 13.05 55.50 0.72 -22.52 16 22 Si 0.93 19.97 29.55 -169.99 -5.02 14.94 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 26 C 0.00 -0.01 4.44 -3.84 -0.02 -0.02 16 27 C 0.10 1.30 3.36 -26.65 -0.09 1.21 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 O -0.56 -6.90 13.14 -35.23 -0.46 -7.36 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.58 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.41 6.27 7.02 -40.82 -0.29 5.99 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.31 5.55 -51.93 -0.29 1.03 16 43 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 46 H 0.39 8.88 7.90 -40.82 -0.32 8.56 16 47 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 48 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 49 H 0.09 1.63 3.86 -51.92 -0.20 1.43 16 50 H 0.38 3.10 9.08 45.56 0.41 3.52 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -30.74 399.98 -7.57 -38.31 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -7.34 Total: 20.71 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: 0.16 Total: 10.23 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.70 Total: -54.70 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.69 Total: -35.52 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.74 -7.57 -38.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.550 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds