Wall clock time and date at job start Wed Apr 1 2020 02:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99819 * 2 1 4 4 C 1.53008 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47105 * 179.97438 * 5 4 3 7 7 O 1.21276 * 119.99764 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99815 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99743 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.52506 * 324.88197 * 9 8 6 11 11 C 1.53124 * 109.51794 * 85.00502 * 9 8 6 12 12 C 1.53032 * 109.27817 * 62.31477 * 11 9 8 13 13 N 1.46847 * 109.52682 * 59.17958 * 12 11 9 14 14 C 1.46899 * 111.00044 * 174.15899 * 13 12 11 15 15 C 1.50703 * 109.47107 * 66.04660 * 14 13 12 16 16 O 1.21286 * 120.00016 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.37091 * 120.00108 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00333 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00268 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99577 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47514 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46914 * 120.00413 * 22 20 18 25 25 H 1.48498 * 109.47071 * 239.99704 * 22 20 18 26 26 C 1.46842 * 111.19604 * 298.25798 * 13 12 11 27 27 C 1.53035 * 109.52655 * 61.73774 * 26 13 12 28 28 H 1.09005 * 109.49923 * 60.76046 * 27 26 13 29 29 O 1.42895 * 109.50432 * 180.87926 * 27 26 13 30 30 H 1.08999 * 109.46964 * 59.99988 * 1 2 3 31 31 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46899 * 299.99864 * 1 2 3 33 33 H 1.09002 * 109.46931 * 60.00555 * 3 2 1 34 34 H 1.09005 * 109.47319 * 299.99911 * 3 2 1 35 35 H 1.08994 * 109.46702 * 60.00133 * 4 3 2 36 36 H 1.09005 * 109.46927 * 300.00091 * 4 3 2 37 37 H 1.09004 * 109.47074 * 59.99929 * 5 4 3 38 38 H 1.08999 * 109.47195 * 300.00282 * 5 4 3 39 39 H 0.96999 * 120.00561 * 0.02562 * 8 6 5 40 40 H 1.08997 * 109.49990 * 302.37176 * 11 9 8 41 41 H 1.08997 * 109.53124 * 182.27474 * 11 9 8 42 42 H 1.09003 * 109.46697 * 299.15746 * 12 11 9 43 43 H 1.09005 * 109.46432 * 179.19590 * 12 11 9 44 44 H 1.09002 * 109.47043 * 186.04640 * 14 13 12 45 45 H 1.09001 * 109.47354 * 306.04701 * 14 13 12 46 46 H 0.97005 * 119.99463 * 359.97438 * 17 15 14 47 47 H 0.96996 * 119.99832 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.46292 * 181.75922 * 26 13 12 49 49 H 1.09008 * 109.46217 * 301.72586 * 26 13 12 50 50 H 0.96704 * 114.00246 * 299.79969 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6601 2.4634 0.0000 7 8 6.1816 1.3685 -0.0009 8 7 6.4240 3.5737 0.0000 9 6 7.8844 3.4581 0.0006 10 1 8.1810 2.5918 0.5919 11 6 8.3850 3.2921 -1.4370 12 6 8.0188 4.5380 -2.2466 13 7 8.6310 5.7216 -1.6297 14 6 8.4162 6.9167 -2.4565 15 6 6.9464 7.2484 -2.4876 16 8 6.1557 6.5569 -1.8812 17 7 6.5105 8.3127 -3.1902 18 6 5.1735 8.6147 -3.2181 19 1 4.4696 7.9996 -2.6775 20 6 4.7243 9.7124 -3.9420 21 7 5.5808 10.4607 -4.6003 22 14 2.9024 10.1235 -3.9806 23 1 2.1541 9.1336 -3.1648 24 1 2.6901 11.4841 -3.4247 25 1 2.4148 10.0801 -5.3826 26 6 8.1296 5.9285 -0.2652 27 6 8.4991 4.7241 0.6037 28 1 9.5836 4.6205 0.6397 29 8 7.9932 4.9168 1.9261 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8575 0.6435 0.8892 37 1 3.8364 3.1227 0.8905 38 1 3.8358 3.1238 -0.8895 39 1 6.0068 4.4495 0.0004 40 1 7.9176 2.4158 -1.8861 41 1 9.4676 3.1655 -1.4335 42 1 6.9353 4.6557 -2.2618 43 1 8.3864 4.4291 -3.2670 44 1 8.9690 7.7554 -2.0333 45 1 8.7669 6.7249 -3.4705 46 1 7.1429 8.8655 -3.6755 47 1 5.2670 11.2267 -5.1059 48 1 8.5776 6.8297 0.1536 49 1 7.0455 6.0398 -0.2896 50 1 8.3410 5.7025 2.3698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099704027.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:32 Heat of formation + Delta-G solvation = -195.170085 kcal Electronic energy + Delta-G solvation = -31482.292433 eV Core-core repulsion = 27122.296480 eV Total energy + Delta-G solvation = -4359.995953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62491 -40.49864 -39.26121 -38.80093 -37.04957 -35.97869 -35.34347 -34.65481 -33.29850 -32.46455 -30.66455 -29.18342 -28.35853 -26.73633 -26.26587 -24.25050 -23.76300 -23.09363 -21.54918 -21.12052 -20.22617 -19.74119 -18.48129 -18.24310 -17.82333 -17.37724 -17.24989 -16.91386 -16.61945 -16.43067 -16.32057 -16.21482 -15.85432 -15.60986 -15.58839 -15.23417 -14.92985 -14.59992 -14.42416 -13.98295 -13.69077 -13.54580 -13.44800 -13.20839 -13.07529 -13.06059 -12.92991 -12.65351 -12.46071 -12.39680 -12.18129 -12.13260 -12.10209 -12.01307 -11.93782 -11.50714 -11.31225 -10.97465 -10.90162 -10.81093 -10.64522 -10.02189 -9.95967 -8.98010 -8.44904 -5.93745 1.35028 1.41864 1.54108 1.65212 2.03903 2.17392 2.28774 2.82287 2.90925 3.21787 3.23407 3.29725 3.69801 3.78247 3.92629 3.94880 4.10359 4.13380 4.20151 4.31256 4.38159 4.41158 4.43555 4.47780 4.49365 4.52017 4.54777 4.59101 4.66683 4.69549 4.70472 4.83368 4.87610 4.91416 5.04862 5.07415 5.18776 5.20136 5.30602 5.43828 5.56364 5.88268 6.04858 6.05458 6.20821 6.54629 6.60461 6.85911 7.13497 7.24861 7.58135 8.11215 8.70630 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007194 B = 0.003475 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3891.113412 B = 8056.032719 C =11172.750030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.062 3.938 4 C -0.093 4.093 5 C -0.133 4.133 6 C 0.511 3.489 7 O -0.584 6.584 8 N -0.706 5.706 9 C 0.151 3.849 10 H 0.079 0.921 11 C -0.113 4.113 12 C 0.043 3.957 13 N -0.495 5.495 14 C 0.048 3.952 15 C 0.410 3.590 16 O -0.612 6.612 17 N -0.571 5.571 18 C -0.325 4.325 19 H 0.083 0.917 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.987 3.013 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.276 1.276 26 C 0.002 3.998 27 C 0.115 3.885 28 H 0.091 0.909 29 O -0.574 6.574 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.407 0.593 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.394 0.606 47 H 0.276 0.724 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -10.107 8.639 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.015 4.015 4 C -0.132 4.132 5 C -0.173 4.173 6 C 0.299 3.701 7 O -0.466 6.466 8 N -0.357 5.357 9 C 0.046 3.954 10 H 0.097 0.903 11 C -0.151 4.151 12 C -0.085 4.085 13 N -0.219 5.219 14 C -0.083 4.083 15 C 0.197 3.803 16 O -0.500 6.500 17 N -0.207 5.207 18 C -0.455 4.455 19 H 0.101 0.899 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.812 3.188 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.201 1.201 26 C -0.127 4.127 27 C 0.055 3.945 28 H 0.109 0.891 29 O -0.381 6.381 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.244 0.756 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.125 0.875 46 H 0.228 0.772 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.394 -11.949 8.837 14.927 hybrid contribution -1.474 2.078 -0.574 2.612 sum -0.080 -9.871 8.263 12.873 Atomic orbital electron populations 1.22937 0.79380 1.03850 1.00938 1.87832 1.21616 1.28852 1.95648 1.22573 0.92925 0.84491 1.01476 1.21084 0.93318 0.95572 1.03178 1.21533 0.90309 0.99332 1.06130 1.20986 0.90604 0.83741 0.74742 1.90645 1.76010 1.27770 1.52128 1.46043 1.06779 1.09274 1.73560 1.20995 0.80020 0.97885 0.96457 0.90327 1.21834 1.02673 0.96872 0.93771 1.22196 0.98628 0.89786 0.97922 1.62462 1.55519 1.02155 1.01748 1.22143 0.90682 0.94855 1.00645 1.22049 0.92825 0.82517 0.82908 1.90349 1.58358 1.52507 1.48747 1.42146 1.08190 1.25941 1.44467 1.19681 0.84786 1.11186 1.29875 0.89937 1.25989 1.03891 0.95696 0.95769 1.69674 1.36214 1.18043 1.32290 0.84943 0.77615 0.78157 0.78098 1.19514 1.19956 1.20129 1.23096 1.01667 0.98565 0.89342 1.21894 0.98061 0.92577 0.81929 0.89141 1.86501 1.72892 1.51231 1.27484 0.93315 0.88501 0.92934 0.91603 0.92322 0.92238 0.91685 0.86775 0.87877 0.75616 0.91767 0.88467 0.94072 0.90748 0.87006 0.87452 0.77193 0.91472 0.90155 0.91762 0.75376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.87 10.70 -148.98 -1.59 -11.46 16 3 C 0.06 1.28 5.94 71.98 0.43 1.71 16 4 C -0.09 -2.30 4.87 30.60 0.15 -2.15 16 5 C -0.13 -3.19 5.70 29.85 0.17 -3.02 16 6 C 0.51 15.55 7.80 87.66 0.68 16.23 16 7 O -0.58 -21.28 15.65 -3.02 -0.05 -21.33 16 8 N -0.71 -20.58 4.18 -442.15 -1.85 -22.42 16 9 C 0.15 4.11 2.51 45.07 0.11 4.22 16 10 H 0.08 2.32 7.59 -2.39 -0.02 2.30 16 11 C -0.11 -2.93 5.76 30.65 0.18 -2.76 16 12 C 0.04 1.25 4.95 86.32 0.43 1.68 16 13 N -0.50 -13.61 4.86 -900.92 -4.38 -17.98 16 14 C 0.05 1.45 5.86 85.56 0.50 1.95 16 15 C 0.41 16.77 7.20 87.66 0.63 17.40 16 16 O -0.61 -27.53 11.20 -3.05 -0.03 -27.57 16 17 N -0.57 -26.59 5.29 -306.99 -1.62 -28.22 16 18 C -0.33 -17.06 9.68 84.04 0.81 -16.25 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 21 N -0.92 -47.76 13.05 21.66 0.28 -47.48 16 22 Si 0.99 40.90 29.55 68.60 2.03 42.93 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.00 0.05 4.44 86.33 0.38 0.43 16 27 C 0.12 2.68 3.36 30.64 0.10 2.79 16 28 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 29 O -0.57 -12.94 13.14 -148.98 -1.96 -14.90 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.06 1.74 8.10 -2.38 -0.02 1.72 16 37 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.41 12.48 7.02 -92.71 -0.65 11.83 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.04 1.49 5.55 -2.39 -0.01 1.47 16 43 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 44 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.11 2.90 8.06 -2.39 -0.02 2.88 16 46 H 0.39 17.83 7.90 -92.70 -0.73 17.09 16 47 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 48 H 0.08 1.96 8.12 -2.39 -0.02 1.94 16 49 H 0.06 2.19 3.86 -2.38 -0.01 2.18 16 50 H 0.40 5.52 9.08 -74.05 -0.67 4.85 16 Total: -1.00 -66.80 399.98 -3.95 -70.76 By element: Atomic # 1 Polarization: 55.09 SS G_CDS: -1.08 Total: 54.02 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.29 Total: 23.65 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -7.56 Total: -116.10 kcal Atomic # 8 Polarization: -71.62 SS G_CDS: -3.63 Total: -75.26 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -66.80 -3.95 -70.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099704027.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.413 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds